Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq378375 174 2e-38
seq28392 156 5e-33
seq58757 134 2e-26
seq134707 120 4e-22
seq2874773 114 2e-20
seq2306809 114 2e-20
seq85459 114 2e-20
seq142543 107 2e-18
seq141641 107 2e-18
seq192739 100 4e-16
seq20229 95.1 2e-14
seq273157 93.3 5e-14
>seq378375
Length=7353
Score = 174 bits (192), Expect = 2e-38
Identities = 153/191 (80%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290
|| |||||| | ||||||||| | | | ||| |||||||| |||||||||||||||||
Sbjct 2605 TTTTTATTAACTGCTTCCAAAACCCGCAGCAGGTGCAAGAAGAGATTGATGATATCCAAA 2664
Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350
|||| ||||| | ||||| || || |||||||| || ||| | || || ||||||||
Sbjct 2665 TAGAGGTTGATGGCCGCTAATACGTACTCTTCAGGTGACAGCCTGTGCATCAGTGAGTGT 2724
Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410
||||||||||| |||||||||||||| | | ||| ||| ||||| || ||||| ||||
Sbjct 2725 GTGTCATAGATGATGAATCCGCAGAAAAGGATGGCTCCACCAGCAGCCAAGACCAACTCC 2784
Query 9411 ACTGTTTCACT 9421
||||| |||||
Sbjct 2785 ACTGTCTCACT 2795
Score = 147 bits (162), Expect = 3e-30
Identities = 104/119 (87%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| |||||||||||||| || |||||||||||| |||||| | |||||
Sbjct 5543 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGACTGTAGAGTATATACAGTCAAACCAAGA 5602
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
|| |||||| |||||| ||||||||||||| || |||| ||||||||||||||||||
Sbjct 5603 AATACTGCACAAGTCAGTATGAAAGCTTGCAGGACAACATACACATCATAGAAAGTAAC 5661
>seq28392
Length=738
Score = 156 bits (172), Expect = 5e-33
Identities = 272/396 (69%), Gaps = 0/396 (0%)
Strand=Plus/Plus
Query 35894 AAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACA 35953
|| || ||||| || || || | ||| ||||||||||| || || |||||||| ||
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60
Query 35954 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATAT 36013
| ||| || |||| |||| || || | ||||||||| || || || || ||
Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120
Query 36014 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 36073
||||||| || ||||| || || || || || || || ||| | || || ||
Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180
Query 36074 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGA 36133
|| ||||| || || || | || || | ||||| | | ||| |||
Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTTTG 240
Query 36134 TACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTA 36193
| ||| | ||||| ||||| | || || || || ||||| | |||||| ||||| |||
Sbjct 241 TGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTA 300
Query 36194 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 36253
|| | ||| ||||||||||||| || ||||| || || || || || ||||| |||||
Sbjct 301 ATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATC 360
Query 36254 GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 36289
|||||||| || || |||||||| || ||||| |||
Sbjct 361 GACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396
>seq58757
Length=22028
Score = 134 bits (148), Expect = 2e-26
Identities = 112/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| |
Sbjct 18135 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATT 18194
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
||||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 18195 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 18254
Query 65301 CTATTTCTAAGACCGTA 65317
|| ||||| | ||| ||
Sbjct 18255 CTGTTTCTTATACCATA 18271
>seq134707
Length=13365
Score = 120 bits (132), Expect = 4e-22
Identities = 158/218 (72%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 9392 AGCAGACAGGACCAGCTCCACTGTTTCACTTTGCACAAATATCCTCAAAAGTCCTGACAA 9451
|| || || ||| | ||||| |||||||| | | ||| ||| |||| |||||||||
Sbjct 28 AGAAGCCAAGACTAACTCCATTGTTTCACCGTAAA-AAACATCTTCAAGGTTCCTGACAA 86
Query 9452 AATTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGA 9511
||||||||||| | ||| | |||| ||||| ||| ||| ||||||||| ||
Sbjct 87 GCACAAAATCCACAAGTCAGAAAATAGGCCTGTTCCAAATTTGCTGCAATCTCTCTCAGA 146
Query 9512 TTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCAT 9571
||| |||||||| |||| | || |||| |||||| |||| || ||| ||||||
Sbjct 147 TTGCAGAGTATACACAGTTGAATCAGGAAATACTGCATGGATCAGTATAAAATCTTGCAG 206
Query 9572 AACGACATGCACATCATAGAAAGTAACAACAGAGGCCA 9609
|| | || |||||| |||||||||||| ||||||
Sbjct 207 GACAATATATACATCACAGAAAGTAACAATGAAGGCCA 244
>seq2874773
Length=295
Score = 114 bits (126), Expect = 2e-20
Identities = 157/218 (72%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 9392 AGCAGACAGGACCAGCTCCACTGTTTCACTTTGCACAAATATCCTCAAAAGTCCTGACAA 9451
|| || || ||| | |||| |||||| | | | ||| ||| |||| ||| |||||
Sbjct 73 AGAAGCCAAGACTAATTCCATTGTTTCGCCATAAA-AAACATCTTCAAGGTTCCCGACAA 131
Query 9452 AATTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGA 9511
||||||||||| | ||| | |||||||||| ||| ||| ||||||||| |
Sbjct 132 GCACAAAATCCACAAGTCAGAAAATAGGCCTGCTCCAAATTTGCTGCAATCTCTCTCAGG 191
Query 9512 TTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCAT 9571
||| |||||||| |||| | || ||||||||||| ||||| || ||| ||||||
Sbjct 192 TTGCAGAGTATACACAGTTGAATCAGGAAACACTGCATGGGTCAGTATAAAATCTTGCAG 251
Query 9572 AACGACATGCACATCATAGAAAGTAACAACAGAGGCCA 9609
|| | || |||||| |||||||||||| ||||||
Sbjct 252 GACAATATATACATCACAGAAAGTAACAATGAAGGCCA 289
>seq2306809
Length=138
Score = 114 bits (126), Expect = 2e-20
Identities = 108/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 36465 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 36524
||||||| ||||| ||||| || || |||||||| | || ||||||||||| ||||||
Sbjct 1 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTT 60
Query 36525 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 36584
||||| || || | ||||||||||| ||||| || ||||| |||||||| || ||||
Sbjct 61 GGCAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 120
Query 36585 ATACATGTTTTATAAAAT 36602
||||| |||||||
Sbjct 121 GCACATGGGAAATAAAAT 138
>seq85459
Length=10496
Score = 114 bits (126), Expect = 2e-20
Identities = 89/106 (84%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
|||||||| || |||||||| | |||||||||||||| ||||| |||||||| |||||
Sbjct 6860 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 6801
Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523
||||| || || |||||||||| || ||||||||||| ||||||
Sbjct 6800 AATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTCT 6755
Score = 105 bits (116), Expect = 8e-18
Identities = 88/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 36193 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 36252
||| | ||| |||||||||||||| || |||||||| || || || || ||||| |||||
Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884
Query 36253 GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300
|| ||||| || || |||||||| || ||||| ||||| ||||||||
Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 8836
>seq142543
Length=7870
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241
|| ||||| || || | || |||||||| |||||||||||||| || || | || ||
Sbjct 6769 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 6828
Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300
||||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||||||
Sbjct 6829 AGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 6887
>seq141641
Length=332
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601
||||||||||| ||||| || ||||| |||||||| || |||| ||||| ||||||
Sbjct 330 AAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAA 271
Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 36661
| | | || | || | || | ||| | | || || || || | ||||| ||
Sbjct 270 TCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCC 211
Query 36662 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 36721
|| |||||||||| || ||||| || || |||||||| | ||| || ||||| |||| |
Sbjct 210 TCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTTA 151
Query 36722 ATTGGAAAAATAACAAA 36738
|| ||||| || |||||
Sbjct 150 ATAGGAAAGATGACAAA 134
>seq192739
Length=1866
Score = 100 bits (110), Expect = 4e-16
Identities = 70/80 (88%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906
||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct 497 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 438
Query 9907 TGGAGGAGCACGCGTAGAGG 9926
|||||| ||| | |||| ||
Sbjct 437 TGGAGGCGCAGGGGTAGCGG 418
>seq20229
Length=11930
Score = 95.1 bits (104), Expect = 2e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478
|||| || || ||||| || | || || || || ||||| || || || || || || |
Sbjct 1644 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 1703
Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538
||||||||||||| ||||||| |||||| | || || || | || ||||| || |
Sbjct 1704 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 1763
Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598
| | | |||||||| || ||||| | ||||| || ||||| || || || | ||| |
Sbjct 1764 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 1823
Query 65599 TCTTATTAGA 65608
||||| ||
Sbjct 1824 GTTTATTCGA 1833
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||| ||||| |||||||| ||||||||||| || | || | || |||| |
Sbjct 8024 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 8083
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
|| || || |||||||| ||||| || | ||| |||||| | | || || |||||||
Sbjct 8084 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 8143
Query 66176 CGGTTCCAAGTATATGGC 66193
||||||| ||| || ||
Sbjct 8144 AGGTTCCAGGTAAATAGC 8161
>seq273157
Length=43465
Score = 93.3 bits (102), Expect = 5e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| |||| ||| || ||||||||||| | || || || || || || || || | |
Sbjct 35133 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 35074
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
||||||| || || || | ||||| | || || ||| | || || |||| ||| ||||
Sbjct 35073 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCA 35014
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 35013 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 34968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 632763125841240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |