Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq378375 174 2e-38 seq28392 156 5e-33 seq58757 134 2e-26 seq134707 120 4e-22 seq2874773 114 2e-20 seq2306809 114 2e-20 seq85459 114 2e-20 seq142543 107 2e-18 seq141641 107 2e-18 seq192739 100 4e-16 seq20229 95.1 2e-14 seq273157 93.3 5e-14 >seq378375 Length=7353 Score = 174 bits (192), Expect = 2e-38 Identities = 153/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | | ||| |||||||| ||||||||||||||||| Sbjct 2605 TTTTTATTAACTGCTTCCAAAACCCGCAGCAGGTGCAAGAAGAGATTGATGATATCCAAA 2664 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| ||||| | ||||| || || |||||||| || ||| | || || |||||||| Sbjct 2665 TAGAGGTTGATGGCCGCTAATACGTACTCTTCAGGTGACAGCCTGTGCATCAGTGAGTGT 2724 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||||||||| | | ||| ||| ||||| || ||||| |||| Sbjct 2725 GTGTCATAGATGATGAATCCGCAGAAAAGGATGGCTCCACCAGCAGCCAAGACCAACTCC 2784 Query 9411 ACTGTTTCACT 9421 ||||| ||||| Sbjct 2785 ACTGTCTCACT 2795 Score = 147 bits (162), Expect = 3e-30 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| || |||||||||||| |||||| | ||||| Sbjct 5543 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGACTGTAGAGTATATACAGTCAAACCAAGA 5602 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||| |||||| ||||||||||||| || |||| |||||||||||||||||| Sbjct 5603 AATACTGCACAAGTCAGTATGAAAGCTTGCAGGACAACATACACATCATAGAAAGTAAC 5661 >seq28392 Length=738 Score = 156 bits (172), Expect = 5e-33 Identities = 272/396 (69%), Gaps = 0/396 (0%) Strand=Plus/Plus Query 35894 AAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACA 35953 || || ||||| || || || | ||| ||||||||||| || || |||||||| || Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60 Query 35954 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATAT 36013 | ||| || |||| |||| || || | ||||||||| || || || || || Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120 Query 36014 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 36073 ||||||| || ||||| || || || || || || || ||| | || || || Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180 Query 36074 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGA 36133 || ||||| || || || | || || | ||||| | | ||| ||| Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTTTG 240 Query 36134 TACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTA 36193 | ||| | ||||| ||||| | || || || || ||||| | |||||| ||||| ||| Sbjct 241 TGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTA 300 Query 36194 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 36253 || | ||| ||||||||||||| || ||||| || || || || || ||||| ||||| Sbjct 301 ATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATC 360 Query 36254 GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 36289 |||||||| || || |||||||| || ||||| ||| Sbjct 361 GACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396 >seq58757 Length=22028 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | Sbjct 18135 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATT 18194 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 18195 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 18254 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 18255 CTGTTTCTTATACCATA 18271 >seq134707 Length=13365 Score = 120 bits (132), Expect = 4e-22 Identities = 158/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 9392 AGCAGACAGGACCAGCTCCACTGTTTCACTTTGCACAAATATCCTCAAAAGTCCTGACAA 9451 || || || ||| | ||||| |||||||| | | ||| ||| |||| ||||||||| Sbjct 28 AGAAGCCAAGACTAACTCCATTGTTTCACCGTAAA-AAACATCTTCAAGGTTCCTGACAA 86 Query 9452 AATTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGA 9511 ||||||||||| | ||| | |||| ||||| ||| ||| ||||||||| || Sbjct 87 GCACAAAATCCACAAGTCAGAAAATAGGCCTGTTCCAAATTTGCTGCAATCTCTCTCAGA 146 Query 9512 TTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCAT 9571 ||| |||||||| |||| | || |||| |||||| |||| || ||| |||||| Sbjct 147 TTGCAGAGTATACACAGTTGAATCAGGAAATACTGCATGGATCAGTATAAAATCTTGCAG 206 Query 9572 AACGACATGCACATCATAGAAAGTAACAACAGAGGCCA 9609 || | || |||||| |||||||||||| |||||| Sbjct 207 GACAATATATACATCACAGAAAGTAACAATGAAGGCCA 244 >seq2874773 Length=295 Score = 114 bits (126), Expect = 2e-20 Identities = 157/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 9392 AGCAGACAGGACCAGCTCCACTGTTTCACTTTGCACAAATATCCTCAAAAGTCCTGACAA 9451 || || || ||| | |||| |||||| | | | ||| ||| |||| ||| ||||| Sbjct 73 AGAAGCCAAGACTAATTCCATTGTTTCGCCATAAA-AAACATCTTCAAGGTTCCCGACAA 131 Query 9452 AATTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGA 9511 ||||||||||| | ||| | |||||||||| ||| ||| ||||||||| | Sbjct 132 GCACAAAATCCACAAGTCAGAAAATAGGCCTGCTCCAAATTTGCTGCAATCTCTCTCAGG 191 Query 9512 TTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCAT 9571 ||| |||||||| |||| | || ||||||||||| ||||| || ||| |||||| Sbjct 192 TTGCAGAGTATACACAGTTGAATCAGGAAACACTGCATGGGTCAGTATAAAATCTTGCAG 251 Query 9572 AACGACATGCACATCATAGAAAGTAACAACAGAGGCCA 9609 || | || |||||| |||||||||||| |||||| Sbjct 252 GACAATATATACATCACAGAAAGTAACAATGAAGGCCA 289 >seq2306809 Length=138 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 36465 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 36524 ||||||| ||||| ||||| || || |||||||| | || ||||||||||| |||||| Sbjct 1 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTT 60 Query 36525 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 36584 ||||| || || | ||||||||||| ||||| || ||||| |||||||| || |||| Sbjct 61 GGCAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 120 Query 36585 ATACATGTTTTATAAAAT 36602 ||||| ||||||| Sbjct 121 GCACATGGGAAATAAAAT 138 >seq85459 Length=10496 Score = 114 bits (126), Expect = 2e-20 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 6860 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 6801 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||||| || ||||||||||| |||||| Sbjct 6800 AATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTCT 6755 Score = 105 bits (116), Expect = 8e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 36193 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 36252 ||| | ||| |||||||||||||| || |||||||| || || || || ||||| ||||| Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884 Query 36253 GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 || ||||| || || |||||||| || ||||| ||||| |||||||| Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 8836 >seq142543 Length=7870 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | || |||||||| |||||||||||||| || || | || || Sbjct 6769 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 6828 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 6829 AGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 6887 >seq141641 Length=332 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 ||||||||||| ||||| || ||||| |||||||| || |||| ||||| |||||| Sbjct 330 AAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAA 271 Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 36661 | | | || | || | || | ||| | | || || || || | ||||| || Sbjct 270 TCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCC 211 Query 36662 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 36721 || |||||||||| || ||||| || || |||||||| | ||| || ||||| |||| | Sbjct 210 TCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTTA 151 Query 36722 ATTGGAAAAATAACAAA 36738 || ||||| || ||||| Sbjct 150 ATAGGAAAGATGACAAA 134 >seq192739 Length=1866 Score = 100 bits (110), Expect = 4e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 497 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 438 Query 9907 TGGAGGAGCACGCGTAGAGG 9926 |||||| ||| | |||| || Sbjct 437 TGGAGGCGCAGGGGTAGCGG 418 >seq20229 Length=11930 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 1644 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 1703 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||||| |||||| | || || || | || ||||| || | Sbjct 1704 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 1763 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 1764 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 1823 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 1824 GTTTATTCGA 1833 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||| ||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 8024 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 8083 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 8084 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 8143 Query 66176 CGGTTCCAAGTATATGGC 66193 ||||||| ||| || || Sbjct 8144 AGGTTCCAGGTAAATAGC 8161 >seq273157 Length=43465 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| | || || || || || || || || | | Sbjct 35133 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 35074 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 35073 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCA 35014 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 35013 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 34968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632763125841240