Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2585192 136 3e-27 seq116363 134 1e-26 seq1495313 91.5 1e-13 seq1430582 91.5 1e-13 >seq2585192 Length=178 Score = 136 bits (150), Expect = 3e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||| |||||| ||| || |||| || || || ||||| |||||||||||||| || | Sbjct 3 TCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGG 62 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| |||||||| |||||||||||||||||| Sbjct 63 GCACACCCAGGCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCA 122 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||||||| ||||| || | |||| || || ||||| ||||| Sbjct 123 CCACGTAGAACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCAT 165 >seq116363 Length=44347 Score = 134 bits (148), Expect = 1e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||| |||||| ||| || |||| || || || ||||| |||||||||||||| || | Sbjct 21711 TCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGG 21652 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | | || |||||||| |||||||||||||||||| Sbjct 21651 GCACACCCAGGCCCATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCT 21592 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168 ||||||| ||||| || | |||| || || ||||| ||||| | | ||| || | || Sbjct 21591 CCACGTAGAACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAGAGGGAGATCTGAGG 21532 Query 21169 GG 21170 || Sbjct 21531 GG 21530 >seq1495313 Length=124 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||||||| || || |||| ||||| |||||||| || || ||||| |||||| ||| Sbjct 105 GTAAACGTGTGCATCTCCCAGAGTGTGTACAAAGTCACCTGGCTTCAGGTCCGTGATGTG 46 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 || |||| || || || ||||| |||||||||||||| || || Sbjct 45 TGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGG 1 >seq1430582 Length=123 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 21379 ACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGC 21438 |||||| || ||||||||||| || || | |||||||| | | || |||||| | Sbjct 1 ACCCGTTGGCATCCCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATC 60 Query 21439 CCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGT 21496 || |||||||||||||||||||||||| || || |||| ||||| | |||||| || Sbjct 61 CCTTGATAAACCACAGCAACTCCTCCAAAACACCTTTCCAGAACACACGTTTGGTTGT 118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411673986131280