Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq2585192 136 3e-27
seq116363 134 1e-26
seq1495313 91.5 1e-13
seq1430582 91.5 1e-13
>seq2585192
Length=178
Score = 136 bits (150), Expect = 3e-27
Identities = 128/163 (79%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
||||| |||||| ||| || |||| || || || ||||| |||||||||||||| || |
Sbjct 3 TCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGG 62
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || || ||||||||||| | |||| |||||||| ||||||||||||||||||
Sbjct 63 GCACACCCAGGCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCA 122
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151
||||||| ||||| || | |||| || || ||||| |||||
Sbjct 123 CCACGTAGAACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCAT 165
>seq116363
Length=44347
Score = 134 bits (148), Expect = 1e-26
Identities = 139/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
||||| |||||| ||| || |||| || || || ||||| |||||||||||||| || |
Sbjct 21711 TCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGG 21652
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || || ||||||||||| | | || |||||||| ||||||||||||||||||
Sbjct 21651 GCACACCCAGGCCCATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCT 21592
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168
||||||| ||||| || | |||| || || ||||| ||||| | | ||| || | ||
Sbjct 21591 CCACGTAGAACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAGAGGGAGATCTGAGG 21532
Query 21169 GG 21170
||
Sbjct 21531 GG 21530
>seq1495313
Length=124
Score = 91.5 bits (100), Expect = 1e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004
||||||||| || || |||| ||||| |||||||| || || ||||| |||||| |||
Sbjct 105 GTAAACGTGTGCATCTCCCAGAGTGTGTACAAAGTCACCTGGCTTCAGGTCCGTGATGTG 46
Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049
|| |||| || || || ||||| |||||||||||||| || ||
Sbjct 45 TGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGG 1
>seq1430582
Length=123
Score = 91.5 bits (100), Expect = 1e-13
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 21379 ACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGC 21438
|||||| || ||||||||||| || || | |||||||| | | || |||||| |
Sbjct 1 ACCCGTTGGCATCCCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATC 60
Query 21439 CCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGT 21496
|| |||||||||||||||||||||||| || || |||| ||||| | |||||| ||
Sbjct 61 CCTTGATAAACCACAGCAACTCCTCCAAAACACCTTTCCAGAACACACGTTTGGTTGT 118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 411673986131280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |