Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq3088379 569 5e-158 seq3048559 170 4e-38 seq2563683 168 2e-37 seq2559636 159 8e-35 seq277625 104 5e-18 >seq3088379 Length=10556 Score = 569 bits (630), Expect = 5e-158 Identities = 1039/1495 (69%), Gaps = 55/1495 (4%) Strand=Plus/Plus Query 751 ATTCAGCTGTTGCCACACACCAAGGGGGAGTGGGCATTCAAGAGGATGCCCATCACGCTG 810 || ||||| | || ||||||||||| ||||||||||||||| | || |||||||| Sbjct 604 ATGCAGCTTCTACCGCACACCAAGGGCGAGTGGGCATTCAAGCGTCAGCTGATCACGCTC 663 Query 811 GAACCGTGGCAGCTCTTTGTGATCTGCTGTG-CGTTTGGCTGGGTCAATAA--AGGCTCC 867 || || |||||||| |||| | || ||| | || |||||||| || || ||| | Sbjct 664 GAGCCTTGGCAGCTTTTTGGCCTA-GCCGTGACATTCGGCTGGGTAAAGAAGAAGGG--C 720 Query 868 CGGCTGCGCCGCTTCAGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCA 927 ||| ||||| ||| | || || ||| | ||| | || ||||||||||||| Sbjct 721 GGGCACCGCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAAAAACGGCAAATCGGTT 780 Query 928 ATCTCTGCCGGTG---TTGCCCT--GTATTGTT--TTGCCTGTGATAACGAGTTCGGCGC 980 | |||||||| ||| | | | || ||| | ||| ||| |||||||||||| Sbjct 781 GT---TGCCGGTGGCGTTGGCATCAGCAT-GTTCGTCGCC---GATGGCGAGTTCGGCGC 833 Query 981 GGAAGTGTATTCCGGTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCG 1040 || ||||| | || || || || ||||||||||| ||||| || || || || || Sbjct 834 CGAGGTGTACGCAGGGGCGACCACTGAGAAACAGGCCTGGGAGGTTTTCCGGCCTGCCAA 893 Query 1041 ACTGATGTGTAAACGCACACCC-ATGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT 1099 |||||| || | | | ||| ||||||| | || ||| || ||||| ||||||| Sbjct 894 GCTGATG-GTCAGCAAATCCCCGATGCTGATTCAGGCCGCCGGCATCGAGGTGAACGCCT 952 Query 1100 CAAACATGAACCGTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGCAACCCCGGTG 1159 | || |||||| ||| || | || || || || |||||||| ||||| || | Sbjct 953 CGAATATGAACATCCCGTCCGACTTCAGTCGCTTCGAGCCACTGATCGGTAACCCTGGCG 1012 Query 1160 ATGGTTCATCACCCCACTGTGCCGTGGTTGATGAATATCACGAGCATGCCACCGATGCGC 1219 | || |||| || ||| ||| | || || || || ||||| || | || || | Sbjct 1013 ACGGCGCATCGCCGAGCTGCGCCATCGTCGACGAGTACCACGAACACCCAACGTCGGCAC 1072 Query 1220 TTTATACCACAATGCTTACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCA 1279 || ||| ||||| || |||||||| || || |||||||||||||||| ||||| Sbjct 1073 AGTACGACACCATGCTCACAGGGATGGGCGCCCGGCGTCAGCCACTGATGTTCATCATCA 1132 Query 1280 CCACCGCCGGGTACAACATTGAGGGGCCGTGCTACGACAAGCGGCGGGAAGTCATCGAGA 1339 |||||||||| | ||||||| || ||||||||||||||||| || | ||| |||||| Sbjct 1133 CCACCGCCGGCGCCGACATTGAAGGCCCGTGCTACGACAAGCGCCGCCAGGTCGTCGAGA 1192 Query 1340 TGCTCAACGGCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAG 1399 ||||| ||| | ||||| | || || | ||||| |||| || |||| || | Sbjct 1193 TGCTCGCCGGTACCGTGCCGGATGAAGAGTTATTCGGCTGGATCTGGACGCTTGACGAGG 1252 Query 1400 GTGACGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGG 1459 | |||||||||||||| ||| || |||||| || ||||| || || ||||| |||| Sbjct 1253 GCGACGACTGGACCGATCCGAAGATGCTGGCCAAGGCCAACCCGAACCACGGCGTCTCGG 1312 Query 1460 TTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAA 1519 | | || || | | ||||||||| | || | || ||| | || | Sbjct 1313 TGTTTCAAGAGTACCTCGAGAGTCAGCAGGCCAGGGCCATCCGCTCTGCGCGTTTTGCCA 1372 Query 1520 ACGTCTTTAAAACAAAACACCTCAATATCTGGGTG-TCGGCGCGTTCGGCGTATTTCAAC 1578 || || ||||| || |||||||| |||||||| || | || |||| | || |||| Sbjct 1373 ACACATTCAAAACTAAGCACCTCAACCTCTGGGTGAGCGCCAAGTCCGGC-TTTTACAAC 1431 Query 1579 CTGGTGAGCTGGCAGAGCTGCGAGGATAAATCACTGACCCTTGAGCAGTTCGAGGGGCAG 1638 ||| |||||| | |||||| || | || |||||||| ||||||||||||||||| Sbjct 1432 ATGGAAAGCTGGAAAGCCTGCGAAGACACGTCGCTGACCCTGGAGCAGTTCGAGGGGCAA 1491 Query 1639 CCGTGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTT 1698 ||| || | ||| ||| ||||||| ||||| ||||||||| || || || | | Sbjct 1492 GAGTGGATAGCCGGCTTCGACTTGGCGCGCAAGCTCGATATGAAC-TCAAGG-GCCAGGT 1549 Query 1699 TATACCCGCGAG--ATTGACGGTAAAACGCATTACTACAGTGTGGCCCCGCGCTTCTGGG 1756 | | | ||| | |||||||| || | || |||||||| | || ||| ||||||| Sbjct 1550 TGTTCTGGCGTGTAATTGACGGGAAGAACCACTACTACAGCATTGCTCCGAAATTCTGGG 1609 Query 1757 TACCGTATGACACGGTGTACAGCGTCGAGAAAAATGAAGATAGACGGACAGCCGAACGCT 1816 | || |||||||| | | || | ||| || || || | || || || | Sbjct 1610 TCCCTTATGACACCGCCTTCAACACCGATAACAA---------GCGCATGGCTGAGCGTT 1660 Query 1817 TTCAGAAATGGGTGGA----AATGGGCGTCCTGACCGTTACCGATGGTGCTGAGGTGGAT 1872 | ||| ||| | | || || | ||| || ||||| ||||| ||||| || Sbjct 1661 TCCAGGCCTGGATTCACTCCAA---GCAT-CTGGATGTGACCGACGGTGCGGAGGTCGAC 1716 Query 1873 TATCGCTACATCCTCGAGGAGGCCAAAGCGGCGAACAA--AATCAGCCCGGTCAGTGAGT 1930 || ||| | ||||| ||||| |||| | ||||||| | || | ||| || | || | Sbjct 1717 TACCGCGAAATCCTTGAGGACACCAAGGAGGCGAACCACCAAGC--CCCTGTGCGCGAAT 1774 Query 1931 CACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGATCTGA 1990 || || ||||| || || || || ||| |||||||||| ||| | | | | | Sbjct 1775 GCCCAATTGACCCTCATGGCGCAACAGGCCTGAGTCATGACCTTGATGACCAGGGTTTCA 1834 Query 1991 ATCCCGTCACTATCGTCCAGAACTTCGCCAATATGTCCGATCCGATGAAAGAGCTGGAAG 2050 |||| ||||| ||| ||||||| | |||| ||||| |||||||||||||||||||| | Sbjct 1835 ATCCGGTCACCATCACGCAGAACTACACCAACATGTCGGATCCGATGAAAGAGCTGGAGG 1894 Query 2051 CAGCGATTGAATCGGGACGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCG 2110 | ||||| || | || || || |||||||||||||| || |||||||||||||| ||| Sbjct 1895 CCGCGATAGAGGCTGGCCGTTTCCATCATGACGGCAACCCGATCATGACCTGGTGCGTCG 1954 Query 2111 GCAATGTGGTCGGCAAAAACATGCCAGGTAACGATGATTTAGTGAAGCCCG-TCAAGGAG 2169 |||| ||| ||||||| ||| |||| ||||||||||| | ||| ||||| |||| || Sbjct 1955 GCAACGTGATCGGCAAGAACTTGCCCGGTAACGATGACATCGTG-CGCCCGATCAAACAG 2013 Query 2170 CAGGCG--GAAAACAAAATCGATGGTGCGGTTGCACTGATTATGACGATCGGTCG 2222 |||| || ||||| ||||| || || || || |||||||||||||| || || Sbjct 2014 --GGCGATGACAACAAGATCGACGGCGCTGTCGCGCTGATTATGACGATAGGACG 2066 >seq3048559 Length=1123 Score = 170 bits (188), Expect = 4e-38 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28295 GAGGTGCAGCATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAATCC 28354 ||||||| || |||| |||| || ||||| |||||||| |||| || || ||||| Sbjct 333 GAGGTGCCGCGTGAGCATGGGCCTTATGGTCGCCGCGATGAAGCTTCGTGTCGGCAATCC 392 Query 28355 ATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTG 28414 |||||| || || || ||||||||||||||||| || |||||||| ||||||||||| Sbjct 393 ATTGCGCAAGCTTGTCCTGATCAAGCTGGCTGACAACGCCAGCGACATAGGTGAGTGCTG 452 Query 28415 GCCCAGCTATCAGCATATCGCTGATCAGTGCGAGATTAGCAAACGTTCTGTGATGAATCA 28474 ||| |||||||||| ||||||| |||||||| || ||||| || || || ||||| || Sbjct 453 GCCGTCCTATCAGCATGTCGCTGACCAGTGCGAAATCAGCAAGCGATCAGTAATGAACCA 512 Query 28475 TATTGCGGCCCTCTGTGAGTCCGG 28498 || | ||||| ||||| |||| Sbjct 513 CATCACCGCCCTGTGTGAAGCCGG 536 >seq2563683 Length=175 Score = 168 bits (186), Expect = 2e-37 Identities = 141/173 (82%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 28293 CGGAGGTGCAGCATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAAT 28352 ||||||||||||||||| |||| || ||||| ||||||||| |||| || |||||| Sbjct 174 CGGAGGTGCAGCATGAGCATGGGCCTTATGGTCGCCGCGATGAAACTTCGCGTCGGTAAT 115 Query 28353 CCATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGC 28412 ||| |||| || ||||| ||||||||| |||| || || |||||||| ||||||||| Sbjct 114 CCACTGCGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTTGGTGAGTGC 55 Query 28413 TGGCCCAGCTATCAGCATATCGCTGATCAGTGCGAGATTAGCAAACGTTCTGT 28465 ||||| ||| ||||| ||||| |||||||||||||| ||||| || ||||| Sbjct 54 TGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAAGCGCTCTGT 2 >seq2559636 Length=175 Score = 159 bits (176), Expect = 8e-35 Identities = 139/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 28293 CGGAGGTGCAGCATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAAT 28352 ||||||||||||||||| |||| || ||||| ||||||||| |||| || |||||| Sbjct 174 CGGAGGTGCAGCATGAGCATGGGCCTTATGGTCGCCGCGATGAAACTTCGCGTCGGTAAT 115 Query 28353 CCATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGC 28412 || | || || ||||| ||||||||| |||| || || |||||||| ||||||||| Sbjct 114 CCTCTACGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTCGGTGAGTGC 55 Query 28413 TGGCCCAGCTATCAGCATATCGCTGATCAGTGCGAGATTAGCAAACGTTCTGT 28465 ||||| ||| ||||| ||||| |||||||||||||| ||||| || ||||| Sbjct 54 TGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAAGCGCTCTGT 2 >seq277625 Length=52836 Score = 104 bits (114), Expect = 5e-18 Identities = 113/148 (76%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 28305 ATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGA--GTGGGTAATCCATTGCGAA 28362 ||||| ||||| |||||||| || || ||||||| ||| || ||||| || | || | Sbjct 40875 ATGAGCATGGATCTGATGGTCAAGGCCATGAAAA--CGAAGGTCGGTAACCCGCTCCGTA 40818 Query 28363 AACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTGGCCCAGCT 28422 | |||| ||| ||||| |||| || || ||||| |||||||| ||||||||||| | Sbjct 40817 AGTTGGTGCTGGTCAAGTTGGCCGACAACGCCAGTGATCAGGGCGAGTGCTGGCCGTCGT 40758 Query 28423 ATCAGCATATCGCTGATCAGTGCGAGAT 28450 | ||||| || || ||||| || ||||| Sbjct 40757 ACCAGCACATTGCCGATCAATGTGAGAT 40730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114168528450952