Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_003444.1
Length=37074
Score E
Sequences producing significant alignments: (Bits) Value
seq3088379 569 5e-158
seq3048559 170 4e-38
seq2563683 168 2e-37
seq2559636 159 8e-35
seq277625 104 5e-18
>seq3088379
Length=10556
Score = 569 bits (630), Expect = 5e-158
Identities = 1039/1495 (69%), Gaps = 55/1495 (4%)
Strand=Plus/Plus
Query 751 ATTCAGCTGTTGCCACACACCAAGGGGGAGTGGGCATTCAAGAGGATGCCCATCACGCTG 810
|| ||||| | || ||||||||||| ||||||||||||||| | || ||||||||
Sbjct 604 ATGCAGCTTCTACCGCACACCAAGGGCGAGTGGGCATTCAAGCGTCAGCTGATCACGCTC 663
Query 811 GAACCGTGGCAGCTCTTTGTGATCTGCTGTG-CGTTTGGCTGGGTCAATAA--AGGCTCC 867
|| || |||||||| |||| | || ||| | || |||||||| || || ||| |
Sbjct 664 GAGCCTTGGCAGCTTTTTGGCCTA-GCCGTGACATTCGGCTGGGTAAAGAAGAAGGG--C 720
Query 868 CGGCTGCGCCGCTTCAGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCA 927
||| ||||| ||| | || || ||| | ||| | || |||||||||||||
Sbjct 721 GGGCACCGCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAAAAACGGCAAATCGGTT 780
Query 928 ATCTCTGCCGGTG---TTGCCCT--GTATTGTT--TTGCCTGTGATAACGAGTTCGGCGC 980
| |||||||| ||| | | | || ||| | ||| ||| ||||||||||||
Sbjct 781 GT---TGCCGGTGGCGTTGGCATCAGCAT-GTTCGTCGCC---GATGGCGAGTTCGGCGC 833
Query 981 GGAAGTGTATTCCGGTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCG 1040
|| ||||| | || || || || ||||||||||| ||||| || || || || ||
Sbjct 834 CGAGGTGTACGCAGGGGCGACCACTGAGAAACAGGCCTGGGAGGTTTTCCGGCCTGCCAA 893
Query 1041 ACTGATGTGTAAACGCACACCC-ATGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT 1099
|||||| || | | | ||| ||||||| | || ||| || ||||| |||||||
Sbjct 894 GCTGATG-GTCAGCAAATCCCCGATGCTGATTCAGGCCGCCGGCATCGAGGTGAACGCCT 952
Query 1100 CAAACATGAACCGTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGCAACCCCGGTG 1159
| || |||||| ||| || | || || || || |||||||| ||||| || |
Sbjct 953 CGAATATGAACATCCCGTCCGACTTCAGTCGCTTCGAGCCACTGATCGGTAACCCTGGCG 1012
Query 1160 ATGGTTCATCACCCCACTGTGCCGTGGTTGATGAATATCACGAGCATGCCACCGATGCGC 1219
| || |||| || ||| ||| | || || || || ||||| || | || || |
Sbjct 1013 ACGGCGCATCGCCGAGCTGCGCCATCGTCGACGAGTACCACGAACACCCAACGTCGGCAC 1072
Query 1220 TTTATACCACAATGCTTACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCA 1279
|| ||| ||||| || |||||||| || || |||||||||||||||| |||||
Sbjct 1073 AGTACGACACCATGCTCACAGGGATGGGCGCCCGGCGTCAGCCACTGATGTTCATCATCA 1132
Query 1280 CCACCGCCGGGTACAACATTGAGGGGCCGTGCTACGACAAGCGGCGGGAAGTCATCGAGA 1339
|||||||||| | ||||||| || ||||||||||||||||| || | ||| ||||||
Sbjct 1133 CCACCGCCGGCGCCGACATTGAAGGCCCGTGCTACGACAAGCGCCGCCAGGTCGTCGAGA 1192
Query 1340 TGCTCAACGGCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAG 1399
||||| ||| | ||||| | || || | ||||| |||| || |||| || |
Sbjct 1193 TGCTCGCCGGTACCGTGCCGGATGAAGAGTTATTCGGCTGGATCTGGACGCTTGACGAGG 1252
Query 1400 GTGACGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGG 1459
| |||||||||||||| ||| || |||||| || ||||| || || ||||| ||||
Sbjct 1253 GCGACGACTGGACCGATCCGAAGATGCTGGCCAAGGCCAACCCGAACCACGGCGTCTCGG 1312
Query 1460 TTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAA 1519
| | || || | | ||||||||| | || | || ||| | || |
Sbjct 1313 TGTTTCAAGAGTACCTCGAGAGTCAGCAGGCCAGGGCCATCCGCTCTGCGCGTTTTGCCA 1372
Query 1520 ACGTCTTTAAAACAAAACACCTCAATATCTGGGTG-TCGGCGCGTTCGGCGTATTTCAAC 1578
|| || ||||| || |||||||| |||||||| || | || |||| | || ||||
Sbjct 1373 ACACATTCAAAACTAAGCACCTCAACCTCTGGGTGAGCGCCAAGTCCGGC-TTTTACAAC 1431
Query 1579 CTGGTGAGCTGGCAGAGCTGCGAGGATAAATCACTGACCCTTGAGCAGTTCGAGGGGCAG 1638
||| |||||| | |||||| || | || |||||||| |||||||||||||||||
Sbjct 1432 ATGGAAAGCTGGAAAGCCTGCGAAGACACGTCGCTGACCCTGGAGCAGTTCGAGGGGCAA 1491
Query 1639 CCGTGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTT 1698
||| || | ||| ||| ||||||| ||||| ||||||||| || || || | |
Sbjct 1492 GAGTGGATAGCCGGCTTCGACTTGGCGCGCAAGCTCGATATGAAC-TCAAGG-GCCAGGT 1549
Query 1699 TATACCCGCGAG--ATTGACGGTAAAACGCATTACTACAGTGTGGCCCCGCGCTTCTGGG 1756
| | | ||| | |||||||| || | || |||||||| | || ||| |||||||
Sbjct 1550 TGTTCTGGCGTGTAATTGACGGGAAGAACCACTACTACAGCATTGCTCCGAAATTCTGGG 1609
Query 1757 TACCGTATGACACGGTGTACAGCGTCGAGAAAAATGAAGATAGACGGACAGCCGAACGCT 1816
| || |||||||| | | || | ||| || || || | || || || |
Sbjct 1610 TCCCTTATGACACCGCCTTCAACACCGATAACAA---------GCGCATGGCTGAGCGTT 1660
Query 1817 TTCAGAAATGGGTGGA----AATGGGCGTCCTGACCGTTACCGATGGTGCTGAGGTGGAT 1872
| ||| ||| | | || || | ||| || ||||| ||||| ||||| ||
Sbjct 1661 TCCAGGCCTGGATTCACTCCAA---GCAT-CTGGATGTGACCGACGGTGCGGAGGTCGAC 1716
Query 1873 TATCGCTACATCCTCGAGGAGGCCAAAGCGGCGAACAA--AATCAGCCCGGTCAGTGAGT 1930
|| ||| | ||||| ||||| |||| | ||||||| | || | ||| || | || |
Sbjct 1717 TACCGCGAAATCCTTGAGGACACCAAGGAGGCGAACCACCAAGC--CCCTGTGCGCGAAT 1774
Query 1931 CACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGATCTGA 1990
|| || ||||| || || || || ||| |||||||||| ||| | | | | |
Sbjct 1775 GCCCAATTGACCCTCATGGCGCAACAGGCCTGAGTCATGACCTTGATGACCAGGGTTTCA 1834
Query 1991 ATCCCGTCACTATCGTCCAGAACTTCGCCAATATGTCCGATCCGATGAAAGAGCTGGAAG 2050
|||| ||||| ||| ||||||| | |||| ||||| |||||||||||||||||||| |
Sbjct 1835 ATCCGGTCACCATCACGCAGAACTACACCAACATGTCGGATCCGATGAAAGAGCTGGAGG 1894
Query 2051 CAGCGATTGAATCGGGACGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCG 2110
| ||||| || | || || || |||||||||||||| || |||||||||||||| |||
Sbjct 1895 CCGCGATAGAGGCTGGCCGTTTCCATCATGACGGCAACCCGATCATGACCTGGTGCGTCG 1954
Query 2111 GCAATGTGGTCGGCAAAAACATGCCAGGTAACGATGATTTAGTGAAGCCCG-TCAAGGAG 2169
|||| ||| ||||||| ||| |||| ||||||||||| | ||| ||||| |||| ||
Sbjct 1955 GCAACGTGATCGGCAAGAACTTGCCCGGTAACGATGACATCGTG-CGCCCGATCAAACAG 2013
Query 2170 CAGGCG--GAAAACAAAATCGATGGTGCGGTTGCACTGATTATGACGATCGGTCG 2222
|||| || ||||| ||||| || || || || |||||||||||||| || ||
Sbjct 2014 --GGCGATGACAACAAGATCGACGGCGCTGTCGCGCTGATTATGACGATAGGACG 2066
>seq3048559
Length=1123
Score = 170 bits (188), Expect = 4e-38
Identities = 160/204 (78%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28295 GAGGTGCAGCATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAATCC 28354
||||||| || |||| |||| || ||||| |||||||| |||| || || |||||
Sbjct 333 GAGGTGCCGCGTGAGCATGGGCCTTATGGTCGCCGCGATGAAGCTTCGTGTCGGCAATCC 392
Query 28355 ATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTG 28414
|||||| || || || ||||||||||||||||| || |||||||| |||||||||||
Sbjct 393 ATTGCGCAAGCTTGTCCTGATCAAGCTGGCTGACAACGCCAGCGACATAGGTGAGTGCTG 452
Query 28415 GCCCAGCTATCAGCATATCGCTGATCAGTGCGAGATTAGCAAACGTTCTGTGATGAATCA 28474
||| |||||||||| ||||||| |||||||| || ||||| || || || ||||| ||
Sbjct 453 GCCGTCCTATCAGCATGTCGCTGACCAGTGCGAAATCAGCAAGCGATCAGTAATGAACCA 512
Query 28475 TATTGCGGCCCTCTGTGAGTCCGG 28498
|| | ||||| ||||| ||||
Sbjct 513 CATCACCGCCCTGTGTGAAGCCGG 536
>seq2563683
Length=175
Score = 168 bits (186), Expect = 2e-37
Identities = 141/173 (82%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 28293 CGGAGGTGCAGCATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAAT 28352
||||||||||||||||| |||| || ||||| ||||||||| |||| || ||||||
Sbjct 174 CGGAGGTGCAGCATGAGCATGGGCCTTATGGTCGCCGCGATGAAACTTCGCGTCGGTAAT 115
Query 28353 CCATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGC 28412
||| |||| || ||||| ||||||||| |||| || || |||||||| |||||||||
Sbjct 114 CCACTGCGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTTGGTGAGTGC 55
Query 28413 TGGCCCAGCTATCAGCATATCGCTGATCAGTGCGAGATTAGCAAACGTTCTGT 28465
||||| ||| ||||| ||||| |||||||||||||| ||||| || |||||
Sbjct 54 TGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAAGCGCTCTGT 2
>seq2559636
Length=175
Score = 159 bits (176), Expect = 8e-35
Identities = 139/173 (80%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 28293 CGGAGGTGCAGCATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAAT 28352
||||||||||||||||| |||| || ||||| ||||||||| |||| || ||||||
Sbjct 174 CGGAGGTGCAGCATGAGCATGGGCCTTATGGTCGCCGCGATGAAACTTCGCGTCGGTAAT 115
Query 28353 CCATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGC 28412
|| | || || ||||| ||||||||| |||| || || |||||||| |||||||||
Sbjct 114 CCTCTACGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTCGGTGAGTGC 55
Query 28413 TGGCCCAGCTATCAGCATATCGCTGATCAGTGCGAGATTAGCAAACGTTCTGT 28465
||||| ||| ||||| ||||| |||||||||||||| ||||| || |||||
Sbjct 54 TGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAAGCGCTCTGT 2
>seq277625
Length=52836
Score = 104 bits (114), Expect = 5e-18
Identities = 113/148 (76%), Gaps = 4/148 (3%)
Strand=Plus/Minus
Query 28305 ATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGA--GTGGGTAATCCATTGCGAA 28362
||||| ||||| |||||||| || || ||||||| ||| || ||||| || | || |
Sbjct 40875 ATGAGCATGGATCTGATGGTCAAGGCCATGAAAA--CGAAGGTCGGTAACCCGCTCCGTA 40818
Query 28363 AACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTGGCCCAGCT 28422
| |||| ||| ||||| |||| || || ||||| |||||||| ||||||||||| |
Sbjct 40817 AGTTGGTGCTGGTCAAGTTGGCCGACAACGCCAGTGATCAGGGCGAGTGCTGGCCGTCGT 40758
Query 28423 ATCAGCATATCGCTGATCAGTGCGAGAT 28450
| ||||| || || ||||| || |||||
Sbjct 40757 ACCAGCACATTGCCGATCAATGTGAGAT 40730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 114168528450952
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