Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq185925 82.4 7e-11
seq66256 82.4 7e-11
>seq185925
Length=7279
Score = 82.4 bits (90), Expect = 7e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGT-GCTCGAGT 139610
||| |||| |||| || ||||| ||||||||||| || || || || || | |
Sbjct 304 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCA-T 362
Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670
|||| || || || |||||| ||||| | | |||||| || ||||| || ||||| || |
Sbjct 363 CTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTAT 422
Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730
| ||| || |||| | ||| | ||| || ||| || ||||||| || | |
Sbjct 423 CCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAGTGATGG 482
Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| || |||| || || | ||| || |||||
Sbjct 483 TCTTCCCCGTCAGGGTCTTCATGAAAATCTGCAT 516
>seq66256
Length=6617
Score = 82.4 bits (90), Expect = 7e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 139572 ACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCAT 139631
||||||| || ||||| ||||| | |||| ||||| ||||| || | |||
Sbjct 1609 ACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCTGGCAA 1550
Query 139632 AGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCT 139691
|||| || | ||||| || || || |||||||| || || ||| || || | |
Sbjct 1549 AGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGT 1490
Query 139692 GTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751
|| | ||||| ||||||| ||||| | ||| | ||||||||||||| || || |
Sbjct 1489 TCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCA 1430
Query 139752 CGAATATTTGCAT 139764
|||| ||||||||
Sbjct 1429 CGAAGATTTGCAT 1417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476912760991200
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |