Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq28392 168 9e-37 seq58757 125 1e-23 seq85459 120 4e-22 seq2306809 109 8e-19 seq142543 104 3e-17 seq20229 98.7 1e-15 seq141641 95.1 2e-14 >seq28392 Length=738 Score = 168 bits (186), Expect = 9e-37 Identities = 275/396 (69%), Gaps = 0/396 (0%) Strand=Plus/Plus Query 49696 AAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACA 49755 || || ||||| || || |||| ||| ||||||||||| || ||||| ||||| || Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60 Query 49756 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATAT 49815 | ||| || |||| |||| || || | |||||| || || || || || || Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120 Query 49816 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAAT 49875 ||||||| || ||||| || || || || || || || ||| | || || || Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180 Query 49876 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGA 49935 || ||||| || || |||| || || | | || | | ||| ||| Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTTTG 240 Query 49936 TGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTA 49995 ||||| | ||||| ||||| | || || || || ||||||| |||||| ||||| ||| Sbjct 241 TGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTA 300 Query 49996 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 50055 || ||||| ||||||||||||| || ||||| || || || || || ||||| ||||| Sbjct 301 ATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATC 360 Query 50056 GACGCAAATGACCCAGAAAAGAAGATTCCTTCTACT 50091 |||||||| || || ||||||||||| ||||| ||| Sbjct 361 GACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396 >seq58757 Length=22028 Score = 125 bits (138), Expect = 1e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | Sbjct 18135 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATT 18194 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||||||||| || ||||||||||| || || ||||| || || | | |||| Sbjct 18195 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 18254 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 18255 CTGTTTCTTATACCATA 18271 >seq85459 Length=10496 Score = 120 bits (132), Expect = 4e-22 Identities = 93/111 (84%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 49995 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 50054 ||| ||||| |||||||||||||| || |||||||| || || || || ||||| ||||| Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884 Query 50055 GGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAAC 50105 || ||||| || || ||||||||||| ||||| |||||||||||||| || Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTAC 8833 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| |||||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 6860 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 6801 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||||| || ||||||||||| |||||| Sbjct 6800 AATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTCT 6755 >seq2306809 Length=138 Score = 109 bits (120), Expect = 8e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 50267 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 50326 ||||||| ||||| || || || || |||||||| | || ||||||||||| |||||| Sbjct 1 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTT 60 Query 50327 TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 ||||| || || | ||||||||||| ||||| || ||||| |||||||| || |||| Sbjct 61 GGCAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 120 Query 50387 ATACATGTTTTATAAAAT 50404 ||||| ||||||| Sbjct 121 GCACATGGGAAATAAAAT 138 >seq142543 Length=7870 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || || || |||||||| |||||||||||||| || || | || || Sbjct 6769 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 6828 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| || |||||||| Sbjct 6829 AGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 6888 Query 50104 AC 50105 || Sbjct 6889 AC 6890 >seq20229 Length=11930 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 8028 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 8087 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| ||| Sbjct 8088 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 8147 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 8148 TCCAGGTAAATAGC 8161 Score = 96.9 bits (106), Expect = 5e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || || | || | ||| | ||||| || || || || ||||| ||| Sbjct 1646 TAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCATAA 1705 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || |||| |||||| | || || ||| | || ||||| || || Sbjct 1706 TAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGTAC 1765 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 1766 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCGT 1825 Query 79480 TTATTAGA 79487 ||||| || Sbjct 1826 TTATTCGA 1833 >seq141641 Length=332 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 50344 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 50403 ||||||||||| ||||| || ||||| |||||||| || |||| ||||| |||||| Sbjct 330 AAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAA 271 Query 50404 TGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCT 50463 | | | || | || | || | ||| | | || || || || | || || || Sbjct 270 TCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCC 211 Query 50464 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 50523 || |||||||||| || ||||| || || |||||||| | ||| || ||||| |||| Sbjct 210 TCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTTA 151 Query 50524 ATTGGGAAAATAACAAA 50540 || || || || ||||| Sbjct 150 ATAGGAAAGATGACAAA 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690539036378040