Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 131 2e-25
seq141641 100 3e-16
seq2658871 96.9 3e-15
seq85459 96.9 3e-15
>seq28392
Length=738
Score = 131 bits (144), Expect = 2e-25
Identities = 269/398 (68%), Gaps = 4/398 (1%)
Strand=Plus/Plus
Query 13608 AAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGAC 13667
||||||||||| || || |||||||| |||||||||||||| |||||||||||| |
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60
Query 13668 ATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATAT 13727
| | || || | | || || || | | | |||||| || | ||||| || ||
Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120
Query 13728 TGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAAT 13787
|| ||| ||| || ||||| || || || || ||||| | | || | ||
Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180
Query 13788 TCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTA--GAAGGAG 13845
|| | |||||| || || | || || || | || |||| | |||||
Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTAT--TTCTTTTACTCTCTGTTCCGAAGGTT 238
Query 13846 GATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTAC 13905
| || ||||| || || | || ||||| ||||| || | ||||||||||| |
Sbjct 239 TGTGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGC 298
Query 13906 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13965
|||||||||| | ||||| || | || ||||||| ||||||||| || | ||| ||||
Sbjct 299 TAATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATA 358
Query 13966 TTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACT 14003
| | ||||| || ||||||||||| || || || |||
Sbjct 359 TCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396
>seq141641
Length=332
Score = 100 bits (110), Expect = 3e-16
Identities = 164/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14316
||||||||||||| ||||| |||||||| |||||||| || |||| | | |||||
Sbjct 332 CCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAA 273
Query 14317 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACT 14375
| | | ||| ||| || || || ||| | | || | ||||| ||||| || ||
Sbjct 272 AATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCACC 214
Query 14376 TCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATAT 14435
|| ||| |||||||||| ||| ||||||| |||||||| ||| || || | |||
Sbjct 213 TCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTAT 154
Query 14436 AATATAGGAAAAACTACAAATC-TCGAAGATGTTTCTTTAAGAATTGGTTC 14485
|||||||| | ||||| | || ||| ||||| | |||| ||||||
Sbjct 153 TTAATAGGAAAGATGACAAAGCGGCGGGGAT-TTTCTCTCAGAAGTGGTTC 104
>seq2658871
Length=189
Score = 96.9 bits (106), Expect = 3e-15
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625
|| || || ||||| | ||||| || | ||||| || |||||||||||||| || ||
Sbjct 85 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 144
Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661
|||||||| |||||||||||||| ||||||||||||
Sbjct 145 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTT 180
>seq85459
Length=10496
Score = 96.9 bits (106), Expect = 3e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 13907 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13966
||||||||| || ||||| || | || ||||| | ||||||||| || | ||| |||||
Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884
Query 13967 TGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC 14026
| ||||| || ||||||||||| || || || ||||| ||||| |||| | |||||
Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACCACACGTTC 8824
Query 14027 TCC 14029
|||
Sbjct 8823 TCC 8821
Score = 89.7 bits (98), Expect = 5e-13
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200
|||||| ||||||||||| | |||||||||||||| |||||||||||||| || || ||
Sbjct 6854 AATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 6795
Query 14201 AAAACCATAAAAGCATCTAGCTTC 14224
|| ||||| || |||| |||||
Sbjct 6794 GAAGCCATAGAAACATCGGGCTTC 6771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461207434937400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |