Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq28392 131 2e-25 seq141641 100 3e-16 seq2658871 96.9 3e-15 seq85459 96.9 3e-15 >seq28392 Length=738 Score = 131 bits (144), Expect = 2e-25 Identities = 269/398 (68%), Gaps = 4/398 (1%) Strand=Plus/Plus Query 13608 AAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGAC 13667 ||||||||||| || || |||||||| |||||||||||||| |||||||||||| | Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60 Query 13668 ATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATAT 13727 | | || || | | || || || | | | |||||| || | ||||| || || Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120 Query 13728 TGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAAT 13787 || ||| ||| || ||||| || || || || ||||| | | || | || Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180 Query 13788 TCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTA--GAAGGAG 13845 || | |||||| || || | || || || | || |||| | ||||| Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTAT--TTCTTTTACTCTCTGTTCCGAAGGTT 238 Query 13846 GATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTAC 13905 | || ||||| || || | || ||||| ||||| || | ||||||||||| | Sbjct 239 TGTGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGC 298 Query 13906 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13965 |||||||||| | ||||| || | || ||||||| ||||||||| || | ||| |||| Sbjct 299 TAATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATA 358 Query 13966 TTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACT 14003 | | ||||| || ||||||||||| || || || ||| Sbjct 359 TCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396 >seq141641 Length=332 Score = 100 bits (110), Expect = 3e-16 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14316 ||||||||||||| ||||| |||||||| |||||||| || |||| | | ||||| Sbjct 332 CCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAA 273 Query 14317 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACT 14375 | | | ||| ||| || || || ||| | | || | ||||| ||||| || || Sbjct 272 AATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCACC 214 Query 14376 TCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATAT 14435 || ||| |||||||||| ||| ||||||| |||||||| ||| || || | ||| Sbjct 213 TCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTAT 154 Query 14436 AATATAGGAAAAACTACAAATC-TCGAAGATGTTTCTTTAAGAATTGGTTC 14485 |||||||| | ||||| | || ||| ||||| | |||| |||||| Sbjct 153 TTAATAGGAAAGATGACAAAGCGGCGGGGAT-TTTCTCTCAGAAGTGGTTC 104 >seq2658871 Length=189 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || || Sbjct 85 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 144 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| |||||||||||||| |||||||||||| Sbjct 145 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTT 180 >seq85459 Length=10496 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 13907 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13966 ||||||||| || ||||| || | || ||||| | ||||||||| || | ||| ||||| Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884 Query 13967 TGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC 14026 | ||||| || ||||||||||| || || || ||||| ||||| |||| | ||||| Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACCACACGTTC 8824 Query 14027 TCC 14029 ||| Sbjct 8823 TCC 8821 Score = 89.7 bits (98), Expect = 5e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 |||||| ||||||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 6854 AATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 6795 Query 14201 AAAACCATAAAAGCATCTAGCTTC 14224 || ||||| || |||| ||||| Sbjct 6794 GAAGCCATAGAAACATCGGGCTTC 6771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461207434937400