Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 118 1e-21
seq85459 91.5 1e-13
seq2658871 87.8 2e-12
>seq28392
Length=738
Score = 118 bits (130), Expect = 1e-21
Identities = 267/398 (67%), Gaps = 4/398 (1%)
Strand=Plus/Plus
Query 13396 AAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGAC 13455
|| |||||||| || || |||||||| |||||||||||||| || ||||||||| |
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60
Query 13456 ATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATAT 13515
| | || || | | || || || | | | |||||| || | ||||| || ||
Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120
Query 13516 TGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAAT 13575
|| ||| ||| || ||||| || || || || ||||| | | || | ||
Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180
Query 13576 TCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTA--GAAGGAG 13633
|| | |||||| || || | | || || |||| || | || | |||||
Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATT-TCTTT-TACTCTCTGTTCCGAAGGTT 238
Query 13634 GATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTAC 13693
| || ||||| || || | || ||||| ||||| || | ||||||||||| |
Sbjct 239 TGTGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGC 298
Query 13694 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13753
|||||||||| | ||||| || | || ||||||| ||||||||| || | ||| ||||
Sbjct 299 TAATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATA 358
Query 13754 TTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACT 13791
| | || || || ||||||||||| || || || |||
Sbjct 359 TCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396
>seq85459
Length=10496
Score = 91.5 bits (100), Expect = 1e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 13695 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13754
||||||||| || ||||| || | || ||||| | ||||||||| || | ||| |||||
Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884
Query 13755 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTC 13814
| || || || ||||||||||| || || || ||||| ||||| |||| | |||||
Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACCACACGTTC 8824
Query 13815 TCC 13817
|||
Sbjct 8823 TCC 8821
Score = 89.7 bits (98), Expect = 5e-13
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988
|||||| ||||||||||| | |||||||||||||| ||||||||||| || || || ||
Sbjct 6854 AATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 6795
Query 13989 AAAACCATAAAAACATCTAGCTTC 14012
|| ||||| ||||||| |||||
Sbjct 6794 GAAGCCATAGAAACATCGGGCTTC 6771
>seq2658871
Length=189
Score = 87.8 bits (96), Expect = 2e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|| || || ||||| | ||||| || | ||||| || ||||| |||||||| || ||
Sbjct 85 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 144
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449
|||||||| |||||||||||||| || |||||||||
Sbjct 145 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTT 180
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 460112215334040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |