Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq28392 118 1e-21 seq85459 91.5 1e-13 seq2658871 87.8 2e-12 >seq28392 Length=738 Score = 118 bits (130), Expect = 1e-21 Identities = 267/398 (67%), Gaps = 4/398 (1%) Strand=Plus/Plus Query 13396 AAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGAC 13455 || |||||||| || || |||||||| |||||||||||||| || ||||||||| | Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60 Query 13456 ATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATAT 13515 | | || || | | || || || | | | |||||| || | ||||| || || Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120 Query 13516 TGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAAT 13575 || ||| ||| || ||||| || || || || ||||| | | || | || Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180 Query 13576 TCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTA--GAAGGAG 13633 || | |||||| || || | | || || |||| || | || | ||||| Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATT-TCTTT-TACTCTCTGTTCCGAAGGTT 238 Query 13634 GATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTAC 13693 | || ||||| || || | || ||||| ||||| || | ||||||||||| | Sbjct 239 TGTGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGC 298 Query 13694 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13753 |||||||||| | ||||| || | || ||||||| ||||||||| || | ||| |||| Sbjct 299 TAATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATA 358 Query 13754 TTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACT 13791 | | || || || ||||||||||| || || || ||| Sbjct 359 TCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396 >seq85459 Length=10496 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 13695 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13754 ||||||||| || ||||| || | || ||||| | ||||||||| || | ||| ||||| Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884 Query 13755 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTC 13814 | || || || ||||||||||| || || || ||||| ||||| |||| | ||||| Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACCACACGTTC 8824 Query 13815 TCC 13817 ||| Sbjct 8823 TCC 8821 Score = 89.7 bits (98), Expect = 5e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| ||||||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 6854 AATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 6795 Query 13989 AAAACCATAAAAACATCTAGCTTC 14012 || ||||| ||||||| ||||| Sbjct 6794 GAAGCCATAGAAACATCGGGCTTC 6771 >seq2658871 Length=189 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || || Sbjct 85 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 144 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| |||||||||||||| || ||||||||| Sbjct 145 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTT 180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460112215334040