Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 178 2e-39
seq58757 138 1e-27
seq142543 111 2e-19
seq85459 109 7e-19
seq20229 98.7 1e-15
>seq28392
Length=738
Score = 178 bits (196), Expect = 2e-39
Identities = 277/396 (70%), Gaps = 0/396 (0%)
Strand=Plus/Plus
Query 41801 AAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACA 41860
|| || |||||||| || |||| ||| ||||||||||| || ||||| ||||| ||
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60
Query 41861 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATAT 41920
| ||| || |||| |||| || || | ||||||||| | ||| || || ||
Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120
Query 41921 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 41980
||||||| || ||||| || || || || || || || ||| | || || ||
Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180
Query 41981 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA 42040
|| ||||| || || || | || || | ||||| | | ||| |||
Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTTTG 240
Query 42041 TACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTA 42100
| ||| | ||||| ||||| | || || || || ||||||| |||||||||||| |||
Sbjct 241 TGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTA 300
Query 42101 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATA 42160
|| | ||| ||||||||||||| || ||||| || || || || || ||||| |||||
Sbjct 301 ATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATC 360
Query 42161 GACGCAAATGATCCAGAAAAGAAGATTCCTTCTACT 42196
|||||||| || || ||||||||||| ||||| |||
Sbjct 361 GACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396
>seq58757
Length=22028
Score = 138 bits (152), Expect = 1e-27
Identities = 112/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | |
Sbjct 18135 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATT 18194
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
||||||||||||||||| || ||||||||||| ||||| ||||| || || | | || |
Sbjct 18195 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 18254
Query 71263 CTATTTCTAAGACCAT 71278
|| ||||| | |||||
Sbjct 18255 CTGTTTCTTATACCAT 18270
>seq142543
Length=7870
Score = 111 bits (122), Expect = 2e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148
|||||||| || || | || |||||||| |||||||||||||| || || | || ||
Sbjct 6769 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 6828
Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207
||||| ||||||| ||||| ||||| || ||||| ||||||||||| || ||||||||
Sbjct 6829 AGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 6887
>seq85459
Length=10496
Score = 109 bits (120), Expect = 7e-19
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 42100 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 42159
||| | ||| |||||||||||||| || |||||||| || || || || ||||| |||||
Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884
Query 42160 AGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207
|| ||||| || || ||||||||||| ||||| ||||| ||||||||
Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 8836
Score = 105 bits (116), Expect = 9e-18
Identities = 87/106 (82%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||||||| || ||||| || | |||||||||||||| ||||| |||||||| |||||
Sbjct 6860 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 6801
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430
|| || || || |||||||||| ||| ||||||| ||| ||||||
Sbjct 6800 AATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTCT 6755
>seq20229
Length=11930
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||| ||||| |||||||| ||||||||||| || | || || || |||| | |||
Sbjct 8028 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 8087
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || |||||||| ||||| || | ||| |||||| | | || || ||||||| |||
Sbjct 8088 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 8147
Query 72142 TCCAAGTATATGGC 72155
|||| ||| || ||
Sbjct 8148 TCCAGGTAAATAGC 8161
Score = 95.1 bits (104), Expect = 2e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440
|||| || || ||||| || | | | ||| || ||||| || || || || |||||||
Sbjct 1644 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 1703
Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500
||||||||||||| || |||| |||||| | || || || || || ||||| || |
Sbjct 1704 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 1763
Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560
| | | |||||||| || ||||| | ||||| || ||||| || || || | || |
Sbjct 1764 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 1823
Query 71561 TCTTATTAGA 71570
||||| ||
Sbjct 1824 GTTTATTCGA 1833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 645228939978360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |