Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq3088379 500 2e-137 seq3048559 170 5e-38 seq2563683 163 7e-36 seq2559636 154 4e-33 seq277625 113 1e-20 >seq3088379 Length=10556 Score = 500 bits (554), Expect = 2e-137 Identities = 1020/1498 (68%), Gaps = 43/1498 (3%) Strand=Plus/Plus Query 681 GAGAAAGCTGCAAAGTTTATTCAGTTACTTCCACATACAAAAGGTGAATGGGCGTTCAAA 740 || |||||| ||| | || ||| | || || || || || || || ||||| ||||| Sbjct 588 GAAAAAGCTC--AAGCTGATGCAGCTTCTACCGCACACCAAGGGCGAGTGGGCATTCAAG 645 Query 741 CGTATGCTGATTACCCTGGAACCGTGGCAACTTTTCATCGTGTGCTGTGCCTTT-GGCTG 799 ||| |||||| || || || || ||||| ||||| | | || ||| | || ||||| Sbjct 646 CGTCAGCTGATCACGCTCGAGCCTTGGCAGCTTTTTGGCCTA-GCCGTGACATTCGGCTG 704 Query 800 GGTACAGAAGGGAACAAAGCTTCGTCGTTTTCGTGAGGTCTACACAGAGATACCACGTAA 859 |||| ||||| || || || || ||||| |||| || | || | || Sbjct 705 GGTAAAGAAGAAGGGCGGGCACCGCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAA 764 Query 860 GAACGGGAAATCGGCTATTTCAGCTGGTGTAGCTCTCTAC-TGTT--TCACCTGTGATAA 916 ||||| ||||||| | || | | ||| || | || | |||| || || ||| Sbjct 765 AAACGGCAAATCGGTTGTTGCCGGTGGCGTTGGCATCAGCATGTTCGTCGCC---GATGG 821 Query 917 CGAATTCGGTGCGGAAGTATACTCCGGCGCCACGACTGAAAAACAGGCGTGGGAGGTATT 976 ||| ||||| || || || ||| | || || || ||||| |||||||| |||||||| || Sbjct 822 CGAGTTCGGCGCCGAGGTGTACGCAGGGGCGACCACTGAGAAACAGGCCTGGGAGGTTTT 881 Query 977 TCGTCCCGCGCGTCTGATGTGTAAGCGCA-CACCACTACTGGTGGAGGCATTCGGTATAG 1035 || || || |||||| || ||| | | || | ||| | |||| ||| || | Sbjct 882 CCGGCCTGCCAAGCTGATG-GTCAGCAAATCCCCGATGCTGATTCAGGCCGCCGGCATCG 940 Query 1036 AGGTGAATGCCTCAAACCTGAAC----CGTCCGGAGGATGGTGCCCGCTTCGAGCCGTTG 1091 ||||||| ||||| || ||||| |||||| | || ||||||||||| || Sbjct 941 AGGTGAACGCCTCGAATATGAACATCCCGTCCG-ACTTCAGT---CGCTTCGAGCCACTG 996 Query 1092 ATCGGCAACCCCGGGGACGGGGCATCACCGCACTGCGCAATAGTTGACGAATACCACGAA 1151 ||||| ||||| || ||||| ||||| ||| |||||| || || ||||| ||||||||| Sbjct 997 ATCGGTAACCCTGGCGACGGCGCATCGCCGAGCTGCGCCATCGTCGACGAGTACCACGAA 1056 Query 1152 CACCCTACGGATGCGCTCTACACAACAATGCTTACAGGTATGGGCGCGCGCCGACAGCCG 1211 ||||| ||| || | ||| || ||||| ||||| |||||||| || || ||||| Sbjct 1057 CACCCAACGTCGGCACAGTACGACACCATGCTCACAGGGATGGGCGCCCGGCGTCAGCCA 1116 Query 1212 CTGATGTGGGCAATAACCACGGCGGGCTACAACATCGAGGGGCCGTGTTACGACAAGCGA 1271 ||||||| || ||||| || ||| | |||| || || ||||| ||||||||||| Sbjct 1117 CTGATGTTCATCATCACCACCGCCGGCGCCGACATTGAAGGCCCGTGCTACGACAAGCGC 1176 Query 1272 CGCGAAGTGATTGAGATGCTGAACGGATCGGTGCCGAACAACGAACTTTTTGGCGTGATT 1331 ||| | || | |||||||| ||| | |||||| | | || | || ||| ||| Sbjct 1177 CGCCAGGTCGTCGAGATGCTCGCCGGTACCGTGCCGGATGAAGAGTTATTCGGCTGGATC 1236 Query 1332 TACACGGTTGATGAAGGGGATGACTGGACAGATCCAAAAGTGCTGGAGAAAGCAAACCCG 1391 | ||| |||| || || || |||||||| ||||| || |||||| || || |||||| Sbjct 1237 TGGACGCTTGACGAGGGCGACGACTGGACCGATCCGAAGATGCTGGCCAAGGCCAACCCG 1296 Query 1392 AACATTGGGGTGTCAGTATACCGTGACTTCCTTCTCAGTCAGCAACAGCGTGCTATTAAC 1451 ||| || || || || | | || | ||| |||||||| | || || | Sbjct 1297 AACCACGGCGTCTCGGTGTTTCAAGAGTACCTCGAGAGTCAGCAGGCCAGGGCCATCCGC 1356 Query 1452 AATGCCCGCCATGCGGGTGTGTTCAAAACGAAGCATCTCAATGTATGGGTTGCCGCCCGC 1511 ||| || ||| |||||||| ||||| ||||| | ||||| |||| Sbjct 1357 TCTGCGCGTTTTGCCAACACATTCAAAACTAAGCACCTCAACCTCTGGGTGAGCGCCAAG 1416 Query 1512 ACAGCATTCTTTAATCTGGTTTCCTGGCAAAACTGTGAGGATAAGACGCTGACGCTGGAA 1571 | | || | || ||| |||| || ||| || || | | ||||||| ||||| Sbjct 1417 TCCGGCTTTTACAACATGGAAAGCTGGAAAGCCTGCGAAGACACGTCGCTGACCCTGGAG 1476 Query 1572 CTGTTTGAGGGTCAACCCTGCGTA-CTGGCGTTCGATCTGGCTCGTAAGCTGGACATGAA 1630 | ||| ||||| ||| || || | ||| ||||| |||| || ||||| || ||||| Sbjct 1477 CAGTTCGAGGGGCAAGAGTGGATAGCCGGC-TTCGACTTGGCGCGCAAGCTCGATATGAA 1535 Query 1631 CAGCATGGCGAGGTTATTTACCCGTGAAATAGACGGGAAAACGCATTTTTACAGCGTGGC 1690 | | ||| ||||| || |||| ||| |||||||| | || | |||||| | || Sbjct 1536 CTCAAGGGCCAGGTTGTTCTGGCGTGTAATTGACGGGAAGAACCACTACTACAGCATTGC 1595 Query 1691 GCCACGTTTCTGGGTGCCGTATGACACGGTCTACAGTGTTGAGAAAAATGAGGATCGCCG 1750 || |||||||| || |||||||| | || || || || || || Sbjct 1596 TCCGAAATTCTGGGTCCCTTATGACACCGCCTTCAACACCGATAACAA---------GCG 1646 Query 1751 TACTGCGGAACGTTTTCAGAAATGGGTTGA----AATGGGCTTTTTGACAGTAACTGATG 1806 | || || ||||| ||| ||| || | || || | | || || || || | Sbjct 1647 CATGGCTGAGCGTTTCCAGGCCTGGATTCACTCCAA---GCATCTGGA-TGTGACCGACG 1702 Query 1807 GTGCGGAGGTGGATTACCGCTACATCCTTGAAGAGGCCAAAGCTGCGAACAAACTGAACC 1866 |||||||||| || |||||| | |||||||| || |||| | |||||| | | || Sbjct 1703 GTGCGGAGGTCGACTACCGCGAAATCCTTGAGGACACCAAGGAGGCGAACCACCAAGCCC 1762 Query 1867 CGGTCAGCGAATCCCCCATTGATCCATTTGGTGCCACCGGGCTTTCACATGATCTAGCTG 1926 | || |||||| ||| ||||| || ||| || || || || ||||| || | || Sbjct 1763 CTGTGCGCGAATGCCCAATTGACCCTCATGGCGCAACAGGCCTGAGTCATGACCTTGATG 1822 Query 1927 ATGAAAACCTGAATCCCGTCACTATCATCCAGAATTACACCAACATGTCCGATCCGATGA 1986 | | | ||||| ||||| |||| ||||| |||||||||||||| |||||||||| Sbjct 1823 ACCAGGGTTTCAATCCGGTCACCATCACGCAGAACTACACCAACATGTCGGATCCGATGA 1882 Query 1987 AAGAACTGGAAGCGGCGATTGAATCGGGTCGCTTTCATCATGACGGCAATCCCATCATGA 2046 |||| ||||| || ||||| || | || || || |||||||||||||| || ||||||| Sbjct 1883 AAGAGCTGGAGGCCGCGATAGAGGCTGGCCGTTTCCATCATGACGGCAACCCGATCATGA 1942 Query 2047 CCTGGTGTATCGGCAACGTGGTCGGCAAAACCATTCCGGGTAACGATGACGTGGTGAAGC 2106 ||||||| ||||||||||| ||||||| | | | || |||||||||||| | ||| | Sbjct 1943 CCTGGTGCGTCGGCAACGTGATCGGCAAGAACTTGCCCGGTAACGATGACATCGTGCGCC 2002 Query 2107 CTATTAAGGAGCAGGCG--GAAAATAAAATCGATGGTGCAGTTGCACTGATTATGGCG 2162 | || || || |||| || || || ||||| || || || || ||||||||| || Sbjct 2003 CGATCAAACAG--GGCGATGACAACAAGATCGACGGCGCTGTCGCGCTGATTATGACG 2058 >seq3048559 Length=1123 Score = 170 bits (188), Expect = 5e-38 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 31015 GAGGTGCTGCATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAATCC 31074 ||||||| || ||||||||| || ||||| |||||||| |||| || || ||||| Sbjct 333 GAGGTGCCGCGTGAGCATGGGCCTTATGGTCGCCGCGATGAAGCTTCGTGTCGGCAATCC 392 Query 31075 ATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTG 31134 |||||| || || || ||||||||||||||||| || |||||||| ||||||||||| Sbjct 393 ATTGCGCAAGCTTGTCCTGATCAAGCTGGCTGACAACGCCAGCGACATAGGTGAGTGCTG 452 Query 31135 GCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGTGATGAATCA 31194 ||| ||| |||||| | |||||||||||||| || ||||| || || || ||||| || Sbjct 453 GCCGTCCTATCAGCATGTCGCTGACCAGTGCGAAATCAGCAAGCGATCAGTAATGAACCA 512 Query 31195 TATTGCGGCCCTTTGTGAGTCCGG 31218 || | ||||| ||||| |||| Sbjct 513 CATCACCGCCCTGTGTGAAGCCGG 536 >seq2563683 Length=175 Score = 163 bits (180), Expect = 7e-36 Identities = 140/173 (81%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 31013 CGGAGGTGCTGCATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAAT 31072 ||||||||| |||||||||||| || ||||| ||||||||| |||| || |||||| Sbjct 174 CGGAGGTGCAGCATGAGCATGGGCCTTATGGTCGCCGCGATGAAACTTCGCGTCGGTAAT 115 Query 31073 CCATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGC 31132 ||| |||| || ||||| ||||||||| |||| || || |||||||| ||||||||| Sbjct 114 CCACTGCGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTTGGTGAGTGC 55 Query 31133 TGGCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGT 31185 ||||| ||||||||| || || || ||||||||||| ||||| || ||||| Sbjct 54 TGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAAGCGCTCTGT 2 >seq2559636 Length=175 Score = 154 bits (170), Expect = 4e-33 Identities = 138/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 31013 CGGAGGTGCTGCATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAAT 31072 ||||||||| |||||||||||| || ||||| ||||||||| |||| || |||||| Sbjct 174 CGGAGGTGCAGCATGAGCATGGGCCTTATGGTCGCCGCGATGAAACTTCGCGTCGGTAAT 115 Query 31073 CCATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGC 31132 || | || || ||||| ||||||||| |||| || || |||||||| ||||||||| Sbjct 114 CCTCTACGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTCGGTGAGTGC 55 Query 31133 TGGCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGT 31185 ||||| ||||||||| || || || ||||||||||| ||||| || ||||| Sbjct 54 TGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAAGCGCTCTGT 2 >seq277625 Length=52836 Score = 113 bits (124), Expect = 1e-20 Identities = 115/148 (78%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 31025 ATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGA--GTGGGTAATCCATTGCGAA 31082 ||||||||||| |||||||| || || ||||||| ||| || ||||| || | || | Sbjct 40875 ATGAGCATGGATCTGATGGTCAAGGCCATGAAAA--CGAAGGTCGGTAACCCGCTCCGTA 40818 Query 31083 AACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTGGCCCAGCT 31142 | |||| ||| ||||| |||| || || ||||| |||||||| ||||||||||| | Sbjct 40817 AGTTGGTGCTGGTCAAGTTGGCCGACAACGCCAGTGATCAGGGCGAGTGCTGGCCGTCGT 40758 Query 31143 ACCAGCATATTGCTGACCAGTGCGAGAT 31170 ||||||| ||||| || || || ||||| Sbjct 40757 ACCAGCACATTGCCGATCAATGTGAGAT 40730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123647635940602