Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_004313.1
Length=40149
Score E
Sequences producing significant alignments: (Bits) Value
seq3088379 500 2e-137
seq3048559 170 5e-38
seq2563683 163 7e-36
seq2559636 154 4e-33
seq277625 113 1e-20
>seq3088379
Length=10556
Score = 500 bits (554), Expect = 2e-137
Identities = 1020/1498 (68%), Gaps = 43/1498 (3%)
Strand=Plus/Plus
Query 681 GAGAAAGCTGCAAAGTTTATTCAGTTACTTCCACATACAAAAGGTGAATGGGCGTTCAAA 740
|| |||||| ||| | || ||| | || || || || || || || ||||| |||||
Sbjct 588 GAAAAAGCTC--AAGCTGATGCAGCTTCTACCGCACACCAAGGGCGAGTGGGCATTCAAG 645
Query 741 CGTATGCTGATTACCCTGGAACCGTGGCAACTTTTCATCGTGTGCTGTGCCTTT-GGCTG 799
||| |||||| || || || || ||||| ||||| | | || ||| | || |||||
Sbjct 646 CGTCAGCTGATCACGCTCGAGCCTTGGCAGCTTTTTGGCCTA-GCCGTGACATTCGGCTG 704
Query 800 GGTACAGAAGGGAACAAAGCTTCGTCGTTTTCGTGAGGTCTACACAGAGATACCACGTAA 859
|||| ||||| || || || || ||||| |||| || | || | ||
Sbjct 705 GGTAAAGAAGAAGGGCGGGCACCGCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAA 764
Query 860 GAACGGGAAATCGGCTATTTCAGCTGGTGTAGCTCTCTAC-TGTT--TCACCTGTGATAA 916
||||| ||||||| | || | | ||| || | || | |||| || || |||
Sbjct 765 AAACGGCAAATCGGTTGTTGCCGGTGGCGTTGGCATCAGCATGTTCGTCGCC---GATGG 821
Query 917 CGAATTCGGTGCGGAAGTATACTCCGGCGCCACGACTGAAAAACAGGCGTGGGAGGTATT 976
||| ||||| || || || ||| | || || || ||||| |||||||| |||||||| ||
Sbjct 822 CGAGTTCGGCGCCGAGGTGTACGCAGGGGCGACCACTGAGAAACAGGCCTGGGAGGTTTT 881
Query 977 TCGTCCCGCGCGTCTGATGTGTAAGCGCA-CACCACTACTGGTGGAGGCATTCGGTATAG 1035
|| || || |||||| || ||| | | || | ||| | |||| ||| || |
Sbjct 882 CCGGCCTGCCAAGCTGATG-GTCAGCAAATCCCCGATGCTGATTCAGGCCGCCGGCATCG 940
Query 1036 AGGTGAATGCCTCAAACCTGAAC----CGTCCGGAGGATGGTGCCCGCTTCGAGCCGTTG 1091
||||||| ||||| || ||||| |||||| | || ||||||||||| ||
Sbjct 941 AGGTGAACGCCTCGAATATGAACATCCCGTCCG-ACTTCAGT---CGCTTCGAGCCACTG 996
Query 1092 ATCGGCAACCCCGGGGACGGGGCATCACCGCACTGCGCAATAGTTGACGAATACCACGAA 1151
||||| ||||| || ||||| ||||| ||| |||||| || || ||||| |||||||||
Sbjct 997 ATCGGTAACCCTGGCGACGGCGCATCGCCGAGCTGCGCCATCGTCGACGAGTACCACGAA 1056
Query 1152 CACCCTACGGATGCGCTCTACACAACAATGCTTACAGGTATGGGCGCGCGCCGACAGCCG 1211
||||| ||| || | ||| || ||||| ||||| |||||||| || || |||||
Sbjct 1057 CACCCAACGTCGGCACAGTACGACACCATGCTCACAGGGATGGGCGCCCGGCGTCAGCCA 1116
Query 1212 CTGATGTGGGCAATAACCACGGCGGGCTACAACATCGAGGGGCCGTGTTACGACAAGCGA 1271
||||||| || ||||| || ||| | |||| || || ||||| |||||||||||
Sbjct 1117 CTGATGTTCATCATCACCACCGCCGGCGCCGACATTGAAGGCCCGTGCTACGACAAGCGC 1176
Query 1272 CGCGAAGTGATTGAGATGCTGAACGGATCGGTGCCGAACAACGAACTTTTTGGCGTGATT 1331
||| | || | |||||||| ||| | |||||| | | || | || ||| |||
Sbjct 1177 CGCCAGGTCGTCGAGATGCTCGCCGGTACCGTGCCGGATGAAGAGTTATTCGGCTGGATC 1236
Query 1332 TACACGGTTGATGAAGGGGATGACTGGACAGATCCAAAAGTGCTGGAGAAAGCAAACCCG 1391
| ||| |||| || || || |||||||| ||||| || |||||| || || ||||||
Sbjct 1237 TGGACGCTTGACGAGGGCGACGACTGGACCGATCCGAAGATGCTGGCCAAGGCCAACCCG 1296
Query 1392 AACATTGGGGTGTCAGTATACCGTGACTTCCTTCTCAGTCAGCAACAGCGTGCTATTAAC 1451
||| || || || || | | || | ||| |||||||| | || || |
Sbjct 1297 AACCACGGCGTCTCGGTGTTTCAAGAGTACCTCGAGAGTCAGCAGGCCAGGGCCATCCGC 1356
Query 1452 AATGCCCGCCATGCGGGTGTGTTCAAAACGAAGCATCTCAATGTATGGGTTGCCGCCCGC 1511
||| || ||| |||||||| ||||| ||||| | ||||| ||||
Sbjct 1357 TCTGCGCGTTTTGCCAACACATTCAAAACTAAGCACCTCAACCTCTGGGTGAGCGCCAAG 1416
Query 1512 ACAGCATTCTTTAATCTGGTTTCCTGGCAAAACTGTGAGGATAAGACGCTGACGCTGGAA 1571
| | || | || ||| |||| || ||| || || | | ||||||| |||||
Sbjct 1417 TCCGGCTTTTACAACATGGAAAGCTGGAAAGCCTGCGAAGACACGTCGCTGACCCTGGAG 1476
Query 1572 CTGTTTGAGGGTCAACCCTGCGTA-CTGGCGTTCGATCTGGCTCGTAAGCTGGACATGAA 1630
| ||| ||||| ||| || || | ||| ||||| |||| || ||||| || |||||
Sbjct 1477 CAGTTCGAGGGGCAAGAGTGGATAGCCGGC-TTCGACTTGGCGCGCAAGCTCGATATGAA 1535
Query 1631 CAGCATGGCGAGGTTATTTACCCGTGAAATAGACGGGAAAACGCATTTTTACAGCGTGGC 1690
| | ||| ||||| || |||| ||| |||||||| | || | |||||| | ||
Sbjct 1536 CTCAAGGGCCAGGTTGTTCTGGCGTGTAATTGACGGGAAGAACCACTACTACAGCATTGC 1595
Query 1691 GCCACGTTTCTGGGTGCCGTATGACACGGTCTACAGTGTTGAGAAAAATGAGGATCGCCG 1750
|| |||||||| || |||||||| | || || || || || ||
Sbjct 1596 TCCGAAATTCTGGGTCCCTTATGACACCGCCTTCAACACCGATAACAA---------GCG 1646
Query 1751 TACTGCGGAACGTTTTCAGAAATGGGTTGA----AATGGGCTTTTTGACAGTAACTGATG 1806
| || || ||||| ||| ||| || | || || | | || || || || |
Sbjct 1647 CATGGCTGAGCGTTTCCAGGCCTGGATTCACTCCAA---GCATCTGGA-TGTGACCGACG 1702
Query 1807 GTGCGGAGGTGGATTACCGCTACATCCTTGAAGAGGCCAAAGCTGCGAACAAACTGAACC 1866
|||||||||| || |||||| | |||||||| || |||| | |||||| | | ||
Sbjct 1703 GTGCGGAGGTCGACTACCGCGAAATCCTTGAGGACACCAAGGAGGCGAACCACCAAGCCC 1762
Query 1867 CGGTCAGCGAATCCCCCATTGATCCATTTGGTGCCACCGGGCTTTCACATGATCTAGCTG 1926
| || |||||| ||| ||||| || ||| || || || || ||||| || | ||
Sbjct 1763 CTGTGCGCGAATGCCCAATTGACCCTCATGGCGCAACAGGCCTGAGTCATGACCTTGATG 1822
Query 1927 ATGAAAACCTGAATCCCGTCACTATCATCCAGAATTACACCAACATGTCCGATCCGATGA 1986
| | | ||||| ||||| |||| ||||| |||||||||||||| ||||||||||
Sbjct 1823 ACCAGGGTTTCAATCCGGTCACCATCACGCAGAACTACACCAACATGTCGGATCCGATGA 1882
Query 1987 AAGAACTGGAAGCGGCGATTGAATCGGGTCGCTTTCATCATGACGGCAATCCCATCATGA 2046
|||| ||||| || ||||| || | || || || |||||||||||||| || |||||||
Sbjct 1883 AAGAGCTGGAGGCCGCGATAGAGGCTGGCCGTTTCCATCATGACGGCAACCCGATCATGA 1942
Query 2047 CCTGGTGTATCGGCAACGTGGTCGGCAAAACCATTCCGGGTAACGATGACGTGGTGAAGC 2106
||||||| ||||||||||| ||||||| | | | || |||||||||||| | ||| |
Sbjct 1943 CCTGGTGCGTCGGCAACGTGATCGGCAAGAACTTGCCCGGTAACGATGACATCGTGCGCC 2002
Query 2107 CTATTAAGGAGCAGGCG--GAAAATAAAATCGATGGTGCAGTTGCACTGATTATGGCG 2162
| || || || |||| || || || ||||| || || || || ||||||||| ||
Sbjct 2003 CGATCAAACAG--GGCGATGACAACAAGATCGACGGCGCTGTCGCGCTGATTATGACG 2058
>seq3048559
Length=1123
Score = 170 bits (188), Expect = 5e-38
Identities = 160/204 (78%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 31015 GAGGTGCTGCATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAATCC 31074
||||||| || ||||||||| || ||||| |||||||| |||| || || |||||
Sbjct 333 GAGGTGCCGCGTGAGCATGGGCCTTATGGTCGCCGCGATGAAGCTTCGTGTCGGCAATCC 392
Query 31075 ATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTG 31134
|||||| || || || ||||||||||||||||| || |||||||| |||||||||||
Sbjct 393 ATTGCGCAAGCTTGTCCTGATCAAGCTGGCTGACAACGCCAGCGACATAGGTGAGTGCTG 452
Query 31135 GCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGTGATGAATCA 31194
||| ||| |||||| | |||||||||||||| || ||||| || || || ||||| ||
Sbjct 453 GCCGTCCTATCAGCATGTCGCTGACCAGTGCGAAATCAGCAAGCGATCAGTAATGAACCA 512
Query 31195 TATTGCGGCCCTTTGTGAGTCCGG 31218
|| | ||||| ||||| ||||
Sbjct 513 CATCACCGCCCTGTGTGAAGCCGG 536
>seq2563683
Length=175
Score = 163 bits (180), Expect = 7e-36
Identities = 140/173 (81%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 31013 CGGAGGTGCTGCATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAAT 31072
||||||||| |||||||||||| || ||||| ||||||||| |||| || ||||||
Sbjct 174 CGGAGGTGCAGCATGAGCATGGGCCTTATGGTCGCCGCGATGAAACTTCGCGTCGGTAAT 115
Query 31073 CCATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGC 31132
||| |||| || ||||| ||||||||| |||| || || |||||||| |||||||||
Sbjct 114 CCACTGCGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTTGGTGAGTGC 55
Query 31133 TGGCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGT 31185
||||| ||||||||| || || || ||||||||||| ||||| || |||||
Sbjct 54 TGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAAGCGCTCTGT 2
>seq2559636
Length=175
Score = 154 bits (170), Expect = 4e-33
Identities = 138/173 (80%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 31013 CGGAGGTGCTGCATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAAT 31072
||||||||| |||||||||||| || ||||| ||||||||| |||| || ||||||
Sbjct 174 CGGAGGTGCAGCATGAGCATGGGCCTTATGGTCGCCGCGATGAAACTTCGCGTCGGTAAT 115
Query 31073 CCATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGC 31132
|| | || || ||||| ||||||||| |||| || || |||||||| |||||||||
Sbjct 114 CCTCTACGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTCGGTGAGTGC 55
Query 31133 TGGCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGT 31185
||||| ||||||||| || || || ||||||||||| ||||| || |||||
Sbjct 54 TGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAAGCGCTCTGT 2
>seq277625
Length=52836
Score = 113 bits (124), Expect = 1e-20
Identities = 115/148 (78%), Gaps = 4/148 (3%)
Strand=Plus/Minus
Query 31025 ATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGA--GTGGGTAATCCATTGCGAA 31082
||||||||||| |||||||| || || ||||||| ||| || ||||| || | || |
Sbjct 40875 ATGAGCATGGATCTGATGGTCAAGGCCATGAAAA--CGAAGGTCGGTAACCCGCTCCGTA 40818
Query 31083 AACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTGGCCCAGCT 31142
| |||| ||| ||||| |||| || || ||||| |||||||| ||||||||||| |
Sbjct 40817 AGTTGGTGCTGGTCAAGTTGGCCGACAACGCCAGTGATCAGGGCGAGTGCTGGCCGTCGT 40758
Query 31143 ACCAGCATATTGCTGACCAGTGCGAGAT 31170
||||||| ||||| || || || |||||
Sbjct 40757 ACCAGCACATTGCCGATCAATGTGAGAT 40730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 123647635940602
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