Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq2574887 118 2e-21 seq1030616 114 2e-20 seq144353 114 2e-20 seq3026527 98.7 2e-15 seq2695558 96.9 6e-15 seq1573652 93.3 7e-14 seq1473679 91.5 3e-13 seq3087993 89.7 9e-13 seq3078897 89.7 9e-13 seq608511 89.7 9e-13 seq1838051 87.8 3e-12 seq1631047 87.8 3e-12 seq2727625 86.0 1e-11 >seq2574887 Length=177 Score = 118 bits (130), Expect = 2e-21 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931 |||||||||||| |||||| |||||| |||||||| ||||||||||| |||||||||||| Sbjct 41 TGGTGGGCCCAGTAGGACTCGAACCTACGACCAAGGGATTATGAGTCCCCTGCTCTAACC 100 Query 272932 AACTGAGCTATAGGCCCT 272949 |||||||||||||||||| Sbjct 101 AACTGAGCTATAGGCCCT 118 >seq1030616 Length=115 Score = 114 bits (126), Expect = 2e-20 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 ||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 114 TGGCTCCACGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCA 55 Query 271801 ACTGAGCTATCACGGAAT 271818 ||||||||||| |||||| Sbjct 54 ACTGAGCTATCGCGGAAT 37 >seq144353 Length=33745 Score = 114 bits (126), Expect = 2e-20 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 271738 ATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTA 271797 || ||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 32771 ATCTGGCTCCACGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTA 32830 Query 271798 CCGACTGAGCTATCACGGAAT 271818 || ||||||||||| |||||| Sbjct 32831 CCAACTGAGCTATCGCGGAAT 32851 >seq3026527 Length=860 Score = 98.7 bits (108), Expect = 2e-15 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 273261 ATTATTAAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGG 273320 ||| |||| |||||||| || ||| || |||||||||||||||||||||||||||||||| Sbjct 69 ATTTTTAATATGGTCGGGGTAGGGGGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGG 10 Query 273321 CGCGCTACC 273329 ||||||||| Sbjct 9 CGCGCTACC 1 >seq2695558 Length=196 Score = 96.9 bits (106), Expect = 6e-15 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 271757 ACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCGACTGAGCTATCACGGA 271816 ||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ACTCGAACCTGGGACCCAATGATTAACAGTCATTTGCTCTACCGACTGAGCTATCACGGA 60 Query 271817 A 271817 | Sbjct 61 A 61 >seq1573652 Length=125 Score = 93.3 bits (102), Expect = 7e-14 Identities = 64/71 (90%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 273289 TCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACC-AACTGCGCTACACTCCGT 273347 ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| Sbjct 123 TCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCGGACTGCGCTATACCCCGG 64 Query 273348 ATTTAAATTGG 273358 || ||||||| Sbjct 63 TTTGAAATTGG 53 >seq1473679 Length=124 Score = 91.5 bits (100), Expect = 3e-13 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326 || |||||||| || ||| || |||||||||||||||||||||||||||||||||||||| Sbjct 63 AATATGGTCGGGGTAGGGGGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 4 Query 273327 ACC 273329 ||| Sbjct 3 ACC 1 >seq3087993 Length=6665 Score = 89.7 bits (98), Expect = 9e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 ||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 6604 TGGCTCCACGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCA 6663 Query 271801 AC 271802 || Sbjct 6664 AC 6665 >seq3078897 Length=2073 Score = 89.7 bits (98), Expect = 9e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACC 271799 ||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 2013 TGGCTCCACGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACC 2071 >seq608511 Length=104 Score = 89.7 bits (98), Expect = 9e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 273261 ATTATTAAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGG 273320 ||| |||| |||||||| || || || ||||||||| |||||||||||||||||||||| Sbjct 72 ATTTTTAATATGGTCGGGGTAAGGGGATTCGAACTCCTGACATCCTGCTCCCAAAGCAGG 13 Query 273321 CGCGCTACC 273329 ||||||||| Sbjct 12 CGCGCTACC 4 >seq1838051 Length=127 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326 ||||||||||| || || || ||||||||| |||||||||||||||||||||||||||| Sbjct 62 AAAATGGTCGGGGTAAGGGGATTCGAACTCCTGACATCCTGCTCCCAAAGCAGGCGCGCT 121 Query 273327 ACC 273329 ||| Sbjct 122 ACC 124 >seq1631047 Length=126 Score = 87.8 bits (96), Expect = 3e-12 Identities = 64/72 (89%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 273289 TCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACC-AACTGCGCTACACTCC-G 273346 ||||||||| ||||||||||||||||||||||||||||||| ||||||||| || || | Sbjct 124 TCGAACTCCTGACATCCTGCTCCCAAAGCAGGCGCGCTACCGGACTGCGCTATACCCCGG 65 Query 273347 TATTTAAATTGG 273358 | || ||||||| Sbjct 64 TTTTGAAATTGG 53 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 271732 TTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTT 271791 ||| ||| ||||||||||||| ||||||||||| |||||||| ||||||||||||| || Sbjct 64 TTTTGAAATTGGCTCCGTGACCAGGACTCGAACCTGGGACCCAATGATTAACAGTCATTT 5 Query 271792 GCTC 271795 |||| Sbjct 4 GCTC 1 >seq2727625 Length=205 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/59 (93%), Gaps = 1/59 (2%) Strand=Plus/Plus Query 273289 TCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACC-AACTGCGCTACACTCCG 273346 ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| Sbjct 3 TCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCGGACTGCGCTATACCCCG 61 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 862313155910640