Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_004629.1
Length=280334
Score E
Sequences producing significant alignments: (Bits) Value
seq2574887 118 2e-21
seq1030616 114 2e-20
seq144353 114 2e-20
seq3026527 98.7 2e-15
seq2695558 96.9 6e-15
seq1573652 93.3 7e-14
seq1473679 91.5 3e-13
seq3087993 89.7 9e-13
seq3078897 89.7 9e-13
seq608511 89.7 9e-13
seq1838051 87.8 3e-12
seq1631047 87.8 3e-12
seq2727625 86.0 1e-11
>seq2574887
Length=177
Score = 118 bits (130), Expect = 2e-21
Identities = 73/78 (94%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931
|||||||||||| |||||| |||||| |||||||| ||||||||||| ||||||||||||
Sbjct 41 TGGTGGGCCCAGTAGGACTCGAACCTACGACCAAGGGATTATGAGTCCCCTGCTCTAACC 100
Query 272932 AACTGAGCTATAGGCCCT 272949
||||||||||||||||||
Sbjct 101 AACTGAGCTATAGGCCCT 118
>seq1030616
Length=115
Score = 114 bits (126), Expect = 2e-20
Identities = 72/78 (92%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800
||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 114 TGGCTCCACGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCA 55
Query 271801 ACTGAGCTATCACGGAAT 271818
||||||||||| ||||||
Sbjct 54 ACTGAGCTATCGCGGAAT 37
>seq144353
Length=33745
Score = 114 bits (126), Expect = 2e-20
Identities = 74/81 (91%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 271738 ATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTA 271797
|| ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 32771 ATCTGGCTCCACGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTA 32830
Query 271798 CCGACTGAGCTATCACGGAAT 271818
|| ||||||||||| ||||||
Sbjct 32831 CCAACTGAGCTATCGCGGAAT 32851
>seq3026527
Length=860
Score = 98.7 bits (108), Expect = 2e-15
Identities = 63/69 (91%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 273261 ATTATTAAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGG 273320
||| |||| |||||||| || ||| || ||||||||||||||||||||||||||||||||
Sbjct 69 ATTTTTAATATGGTCGGGGTAGGGGGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGG 10
Query 273321 CGCGCTACC 273329
|||||||||
Sbjct 9 CGCGCTACC 1
>seq2695558
Length=196
Score = 96.9 bits (106), Expect = 6e-15
Identities = 58/61 (95%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 271757 ACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCGACTGAGCTATCACGGA 271816
||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ACTCGAACCTGGGACCCAATGATTAACAGTCATTTGCTCTACCGACTGAGCTATCACGGA 60
Query 271817 A 271817
|
Sbjct 61 A 61
>seq1573652
Length=125
Score = 93.3 bits (102), Expect = 7e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand=Plus/Minus
Query 273289 TCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACC-AACTGCGCTACACTCCGT 273347
||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct 123 TCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCGGACTGCGCTATACCCCGG 64
Query 273348 ATTTAAATTGG 273358
|| |||||||
Sbjct 63 TTTGAAATTGG 53
>seq1473679
Length=124
Score = 91.5 bits (100), Expect = 3e-13
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326
|| |||||||| || ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 63 AATATGGTCGGGGTAGGGGGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 4
Query 273327 ACC 273329
|||
Sbjct 3 ACC 1
>seq3087993
Length=6665
Score = 89.7 bits (98), Expect = 9e-13
Identities = 57/62 (92%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800
||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 6604 TGGCTCCACGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCA 6663
Query 271801 AC 271802
||
Sbjct 6664 AC 6665
>seq3078897
Length=2073
Score = 89.7 bits (98), Expect = 9e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACC 271799
||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 2013 TGGCTCCACGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACC 2071
>seq608511
Length=104
Score = 89.7 bits (98), Expect = 9e-13
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 273261 ATTATTAAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGG 273320
||| |||| |||||||| || || || ||||||||| ||||||||||||||||||||||
Sbjct 72 ATTTTTAATATGGTCGGGGTAAGGGGATTCGAACTCCTGACATCCTGCTCCCAAAGCAGG 13
Query 273321 CGCGCTACC 273329
|||||||||
Sbjct 12 CGCGCTACC 4
>seq1838051
Length=127
Score = 87.8 bits (96), Expect = 3e-12
Identities = 57/63 (90%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326
||||||||||| || || || ||||||||| ||||||||||||||||||||||||||||
Sbjct 62 AAAATGGTCGGGGTAAGGGGATTCGAACTCCTGACATCCTGCTCCCAAAGCAGGCGCGCT 121
Query 273327 ACC 273329
|||
Sbjct 122 ACC 124
>seq1631047
Length=126
Score = 87.8 bits (96), Expect = 3e-12
Identities = 64/72 (89%), Gaps = 2/72 (3%)
Strand=Plus/Minus
Query 273289 TCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACC-AACTGCGCTACACTCC-G 273346
||||||||| ||||||||||||||||||||||||||||||| ||||||||| || || |
Sbjct 124 TCGAACTCCTGACATCCTGCTCCCAAAGCAGGCGCGCTACCGGACTGCGCTATACCCCGG 65
Query 273347 TATTTAAATTGG 273358
| || |||||||
Sbjct 64 TTTTGAAATTGG 53
Score = 84.2 bits (92), Expect = 4e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 271732 TTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTT 271791
||| ||| ||||||||||||| ||||||||||| |||||||| ||||||||||||| ||
Sbjct 64 TTTTGAAATTGGCTCCGTGACCAGGACTCGAACCTGGGACCCAATGATTAACAGTCATTT 5
Query 271792 GCTC 271795
||||
Sbjct 4 GCTC 1
>seq2727625
Length=205
Score = 86.0 bits (94), Expect = 1e-11
Identities = 55/59 (93%), Gaps = 1/59 (2%)
Strand=Plus/Plus
Query 273289 TCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACC-AACTGCGCTACACTCCG 273346
||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct 3 TCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCGGACTGCGCTATACCCCG 61
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 862313155910640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |