Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_004681.1
Length=75931
Score E
Sequences producing significant alignments: (Bits) Value
seq2830298 120 1e-22
seq2744214 87.8 8e-13
>seq2830298
Length=253
Score = 120 bits (132), Expect = 1e-22
Identities = 180/254 (71%), Gaps = 4/254 (2%)
Strand=Plus/Plus
Query 66838 CGCCTACATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCG--CTCGGTGTG 66895
||| | | ||||||| |||||| ||||||| || || |||||| ||| || || ||
Sbjct 1 CGCGTTCGTCGACGCCGAGCACGCCCTGGATCCTGAATACGCC--GGCAAACTGGGCGTC 58
Query 66896 GACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTT 66955
|| | ||| |||| |||| ||||||||||| || ||||| ||||| || |||
Sbjct 59 AACGTTGACGACCTGCTGGTTTCGCAGCCGGACACCGGTGAGCAAGCCCTCGAAATCACC 118
Query 66956 GACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTG 67015
||| | || || || || | | | |||| || ||||| |||||||| |||
Sbjct 119 GACATGCTGGTGCGTTCCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCGGCGCTG 178
Query 67016 GTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGC 67075
|| ||| || || |||||||||| || || |||| ||||| |||||||| || |||
Sbjct 179 GTACCGAAGGCAGAAATCGAAGGCGAAATGGGCGACATGCACGTGGGCCTGCAAGCCCGC 238
Query 67076 CTCATGTCGCAGGC 67089
|| ||||| |||||
Sbjct 239 CTGATGTCCCAGGC 252
>seq2744214
Length=211
Score = 87.8 bits (96), Expect = 8e-13
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 66690 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 66749
|||| |||||| | | ||||||| ||| || ||||| || || || | |||||
Sbjct 3 CCACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 62
Query 66750 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 66809
| || ||||||||||| || |||||||| || || | |||||| ||| | | | |
Sbjct 63 TTGTCGAAATCTACGGTCCTGAATCTTCCGGTAAAACTACTCTGACTCTGTCGGTGATTG 122
Query 66810 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 66869
|| | ||||| || || | || | ||| | | ||||||| |||||| ||||||| |
Sbjct 123 CCCAGGCGCAAAAAATGGGCGCCACCTGCGCGTTCGTCGACGCCGAGCACGCCCTGGATC 182
Query 66870 CCGAGTACGCC 66880
| || ||||||
Sbjct 183 CTGAATACGCC 193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 233713062204332
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |