Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq3066367 118 7e-22 seq2606047 98.7 7e-16 seq261985 93.3 3e-14 >seq3066367 Length=1492 Score = 118 bits (130), Expect = 7e-22 Identities = 234/338 (69%), Gaps = 19/338 (6%) Strand=Plus/Plus Query 99229 TCGGAGACGAACGCGCCCTGTATCCGGAT-GGC--GCTGCGCGCCCCCACTGGCAGAAAT 99285 ||||| |||||||| || || | ||||| ||| |||| | || ||||| | | Sbjct 761 TCGGAAACGAACGCACCGTGGACACGGATCGGCAGGCTG---GTGCCGGGTGGCATATAG 817 Query 99286 AACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTA 99345 | | |||||| |||| ||||||||||| ||||||| ||| | ||| ||| Sbjct 818 AGCATGTCACCGTGGCCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTCCGCGAG 877 Query 99346 TCGGTGAGG---GACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGG 99402 ||| | | ||| | ||| |||| || |||| || | |||| |||||| ||| Sbjct 878 TCGATCTTGCTCGACACC-TGG--AACGCCATACGCGTAGGAATGTTGGCCTTGATCAGG 934 Query 99403 CCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCA 99462 || || | ||||||||| || |||||||| || || |||| || || || ||||||||| Sbjct 935 CCGGTGATCACATCCACCGACGGCCGCTGGGTGGCGAGGATCAGGTGGATCCCGGCCGCA 994 Query 99463 CGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTGTAGCCACCCA 99520 || |||||||| ||||| || | || ||| | || ||| |||||| | | || Sbjct 995 CGGGCCTTCTGGGCGATACGCGCGATCAGTT--CTTCGACC---TTCTTGCCGACGATCA 1049 Query 99521 TCATGAGATCAGCGAGTTCATCCACCACTACCACGATG 99558 |||| | || |||| ||| || ||||| ||||||||| Sbjct 1050 TCATCATGTCGGCGAATTCGTCGACCACCACCACGATG 1087 >seq2606047 Length=181 Score = 98.7 bits (108), Expect = 7e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 99366 GAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGG 99425 ||||| || ||||| || | |||| |||||| | ||| || | ||||||||| || || Sbjct 19 GAACGCCATCCGCGTTGGAATGTTGGCCTTGATCAAGCCGGTGATCACATCCACCGACGG 78 Query 99426 CCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCG 99482 |||||| ||||| |||| | ||||| ||||||||||||||||| || ||||| || Sbjct 79 CCGCTGGGTCGCGAGGATCAAGTGAATACCGGCCGCACGCGCCTTTTGGGCGATACG 135 >seq261985 Length=1168 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/188 (73%), Gaps = 12/188 (6%) Strand=Plus/Minus Query 99301 CCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATC--ACCCGGCT--ATC--GGTGAGG 99354 |||| ||||||||||| ||||||| ||| | ||| || || | ||| | || | Sbjct 228 CCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTACGCGAGTCGATCTTGCTG-GA 170 Query 99355 GACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACA 99414 ||| ||| ||||| || ||||| || | |||| |||||| | ||| || | ||| Sbjct 169 GAC-CTG----GAACGCCATCCGCGTTGGAATGTTGGCCTTGATCAAGCCGGTGATTACA 115 Query 99415 TCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGC 99474 ||||| || |||||||| ||||| |||| | ||||| ||||||||||| ||||| || Sbjct 114 TCCACCGACGGCCGCTGGGTCGCGAGGATCAAGTGAATACCGGCCGCACGGGCCTTTTGG 55 Query 99475 GCGATGCG 99482 ||||| || Sbjct 54 GCGATACG 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 341293994516646