Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_004688.1
Length=110865
Score E
Sequences producing significant alignments: (Bits) Value
seq3066367 118 7e-22
seq2606047 98.7 7e-16
seq261985 93.3 3e-14
>seq3066367
Length=1492
Score = 118 bits (130), Expect = 7e-22
Identities = 234/338 (69%), Gaps = 19/338 (6%)
Strand=Plus/Plus
Query 99229 TCGGAGACGAACGCGCCCTGTATCCGGAT-GGC--GCTGCGCGCCCCCACTGGCAGAAAT 99285
||||| |||||||| || || | ||||| ||| |||| | || ||||| | |
Sbjct 761 TCGGAAACGAACGCACCGTGGACACGGATCGGCAGGCTG---GTGCCGGGTGGCATATAG 817
Query 99286 AACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTA 99345
| | |||||| |||| ||||||||||| ||||||| ||| | ||| |||
Sbjct 818 AGCATGTCACCGTGGCCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTCCGCGAG 877
Query 99346 TCGGTGAGG---GACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGG 99402
||| | | ||| | ||| |||| || |||| || | |||| |||||| |||
Sbjct 878 TCGATCTTGCTCGACACC-TGG--AACGCCATACGCGTAGGAATGTTGGCCTTGATCAGG 934
Query 99403 CCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCA 99462
|| || | ||||||||| || |||||||| || || |||| || || || |||||||||
Sbjct 935 CCGGTGATCACATCCACCGACGGCCGCTGGGTGGCGAGGATCAGGTGGATCCCGGCCGCA 994
Query 99463 CGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTGTAGCCACCCA 99520
|| |||||||| ||||| || | || ||| | || ||| |||||| | | ||
Sbjct 995 CGGGCCTTCTGGGCGATACGCGCGATCAGTT--CTTCGACC---TTCTTGCCGACGATCA 1049
Query 99521 TCATGAGATCAGCGAGTTCATCCACCACTACCACGATG 99558
|||| | || |||| ||| || ||||| |||||||||
Sbjct 1050 TCATCATGTCGGCGAATTCGTCGACCACCACCACGATG 1087
>seq2606047
Length=181
Score = 98.7 bits (108), Expect = 7e-16
Identities = 92/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 99366 GAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGG 99425
||||| || ||||| || | |||| |||||| | ||| || | ||||||||| || ||
Sbjct 19 GAACGCCATCCGCGTTGGAATGTTGGCCTTGATCAAGCCGGTGATCACATCCACCGACGG 78
Query 99426 CCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCG 99482
|||||| ||||| |||| | ||||| ||||||||||||||||| || ||||| ||
Sbjct 79 CCGCTGGGTCGCGAGGATCAAGTGAATACCGGCCGCACGCGCCTTTTGGGCGATACG 135
>seq261985
Length=1168
Score = 93.3 bits (102), Expect = 3e-14
Identities = 137/188 (73%), Gaps = 12/188 (6%)
Strand=Plus/Minus
Query 99301 CCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATC--ACCCGGCT--ATC--GGTGAGG 99354
|||| ||||||||||| ||||||| ||| | ||| || || | ||| | || |
Sbjct 228 CCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTACGCGAGTCGATCTTGCTG-GA 170
Query 99355 GACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACA 99414
||| ||| ||||| || ||||| || | |||| |||||| | ||| || | |||
Sbjct 169 GAC-CTG----GAACGCCATCCGCGTTGGAATGTTGGCCTTGATCAAGCCGGTGATTACA 115
Query 99415 TCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGC 99474
||||| || |||||||| ||||| |||| | ||||| ||||||||||| ||||| ||
Sbjct 114 TCCACCGACGGCCGCTGGGTCGCGAGGATCAAGTGAATACCGGCCGCACGGGCCTTTTGG 55
Query 99475 GCGATGCG 99482
||||| ||
Sbjct 54 GCGATACG 47
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 341293994516646
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |