Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_005178.1
Length=37611
Score E
Sequences producing significant alignments: (Bits) Value
seq3084660 147 5e-31
seq3087822 123 6e-24
seq3088451 91.5 3e-14
seq156999 87.8 4e-13
>seq3084660
Length=3030
Score = 147 bits (162), Expect = 5e-31
Identities = 137/170 (81%), Gaps = 3/170 (2%)
Strand=Plus/Minus
Query 26466 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 26525
||||||||||||||||||||||||| || || ||||| |||||||| ||||||||||
Sbjct 2200 CGATGCAGGAAGCGACCGGCAAGGCCGTGAGCGAGACGGTTGCCGAGTTTTCCAAGCTGG 2141
Query 26526 CCGACGAACCGGTCAAAGCCTC-GCAGCAACTCAACGAGAAATATCACTACCTGACCGCC 26584
| ||||| |||||||| || || || || || |||||| | || ||||||||||| |||
Sbjct 2140 CTGACGATCCGGTCAAGGCGTCCGCCGCG-CTAAACGAGCAGTACCACTACCTGACTGCC 2082
Query 26585 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT-TCGCTGG 26633
||||||||| ||| || | || || || ||||||||||| ||||||
Sbjct 2081 TCGGTTTACTCGCAAATCGTGGCTCTGGAGAAGCAAGGCGATCACGCTGG 2032
>seq3087822
Length=6084
Score = 123 bits (136), Expect = 6e-24
Identities = 126/162 (78%), Gaps = 2/162 (1%)
Strand=Plus/Minus
Query 26466 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 26525
|||||||||| || ||||||||||| || || |||||||| ||||||||||| ||||
Sbjct 5242 CGATGCAGGAGGCCACCGGCAAGGCCGTAAGCGAAACGGTCGCTGAGTTCTCCAAACTGG 5183
Query 26526 CCGACGAACCGGTCAAAGCCTC-GCAGCAACTCAACGAGAAATATCACTACCTGACCGCC 26584
| ||||| |||||||| || || || || || || ||| |||| || |||||||| |||
Sbjct 5182 CTGACGATCCGGTCAAGGCATCCGCCGCG-CTTAATGAGCAATACCATTACCTGACTGCC 5124
Query 26585 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT 26626
|||||||| ||| || | || || || || |||||| ||
Sbjct 5123 TCGGTTTATTCGCAAATTTCAGCACTGGAACAACAAGGCAAT 5082
Score = 84.2 bits (92), Expect = 5e-12
Identities = 144/204 (71%), Gaps = 4/204 (2%)
Strand=Plus/Minus
Query 27412 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 27471
|||||||| || || ||||| |||| || ||| || ||||| || | | |||
Sbjct 4367 GACCAGGTGACGGCGGCCTACGAGGCCGAGATCACCGCACTGGAAGCCGTCAAGGGCAAG 4308
Query 27472 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 27531
| | || |||| || ||| ||||| |||||||||||||||||||| || | | |
Sbjct 4307 AAGACAACATCGGCCGCGCAGAGCATCCAGCTGGACCAGAAGATCGCCGACGC-ACGCGC 4249
Query 27532 AA-CATGGTCAAGGCGCAGAAGAAGGCCGACGCCGACCTGGAAGTCCTCCAGCTCAACGA 27590
| ||||||||||||||||||| | || ||| | | || ||||| || | |||||
Sbjct 4248 AGGCATGGTCAAGGCGCAGAAGGACGCTGACAGCCAGCTTGAAGTGCTGGCGACGAACGA 4189
Query 27591 -ACAGGGCCGCCTGAAGAAACAGG 27613
|| ||| |||||| |||||||
Sbjct 4188 GACCGGG-CGCCTGGCCAAACAGG 4166
>seq3088451
Length=13260
Score = 91.5 bits (100), Expect = 3e-14
Identities = 206/300 (69%), Gaps = 10/300 (3%)
Strand=Plus/Plus
Query 27316 AACGCCGAGCAGAAGCTCCAGGCGCAGCAGCGCGCCGGCCTACTGA-GCTATGCGGACTA 27374
|||||| || || | || ||||||||||| || ||| | | ||| | |||||||
Sbjct 7376 AACGCCCAGAAGGAACTGGAGGCGCAGCAGAAGGCTGGCGTGGTTTCGCTGT-CGGACTA 7434
Query 27375 TGTCGCGCAGCGCGGCGAAC-TGATCAGCCAGAACAAGGACCAGGTCACCGCAGCCTATG 27433
| ||| || | ||| | |||||| |||| | |||||| | || || || || ||
Sbjct 7435 CGCAAAGCAACG-GTCGACCCTGATCAACCAGGAAAAGGACGATGTGACGGCCGCGTACC 7493
Query 27434 AGGGGGAAATCCAGGCGCTGGAGGCG--CTGCGCGACAAAAGTTCCACCACGGCGGCCCA 27491
||| || ||| | || ||||||||| | || | |||| ||| ||| |||| ||
Sbjct 7494 AGGCTGAGATCGATGCACTGGAGGCGGCCAAGGCCAAGAAAGG--CACAACGACGGCTCA 7551
Query 27492 GCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAACAACATGGTCAAGGCGCAGAA 27551
| | ||| |||||||| ||||||||||| || || | ||||||||||| |||||
Sbjct 7552 GAGTATCCAGCTGGACCAAAAGATCGCCGATGCACGGCAGGGGATGGTCAAGGCTCAGAA 7611
Query 27552 GAAGGCCGACGCCGACCTGGAAGTC-CTCCAGCTCAACGAACAGGGCCGCCTGAAGAAAC 27610
| | || ||| | | ||| ||| | || | |||||| | ||||||||| || |||
Sbjct 7612 GGATGCTGACAGCCAGCTGACCGTCATTGCAAC-GAACGAAAAAGGCCGCCTGGAGCAAC 7670
>seq156999
Length=6365
Score = 87.8 bits (96), Expect = 4e-13
Identities = 118/163 (72%), Gaps = 1/163 (1%)
Strand=Plus/Plus
Query 11520 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACGCAACAACT 11579
|||| |||||| | || ||| ||||||||||||||||| | || |||| | |
Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992
Query 11580 GGCAGGGCCAGCTCCCGCACAACCCGAAGATCGAGCCCCGATTCGCCCGCTTCGACACCG 11639
|||| ||||||||| || | | ||| | | ||| || |||||||| || || ||
Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052
Query 11640 CGCATAACGGCATCCGCGCCCTGGCAAAGCTGCTGCTGAACTA 11682
| | ||||| ||||||||||||| ||| ||||||||| |||
Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTA 4095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 115823904295486
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