Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_005178.1 Length=37611 Score E Sequences producing significant alignments: (Bits) Value seq3084660 147 5e-31 seq3087822 123 6e-24 seq3088451 91.5 3e-14 seq156999 87.8 4e-13 >seq3084660 Length=3030 Score = 147 bits (162), Expect = 5e-31 Identities = 137/170 (81%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 26466 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 26525 ||||||||||||||||||||||||| || || ||||| |||||||| |||||||||| Sbjct 2200 CGATGCAGGAAGCGACCGGCAAGGCCGTGAGCGAGACGGTTGCCGAGTTTTCCAAGCTGG 2141 Query 26526 CCGACGAACCGGTCAAAGCCTC-GCAGCAACTCAACGAGAAATATCACTACCTGACCGCC 26584 | ||||| |||||||| || || || || || |||||| | || ||||||||||| ||| Sbjct 2140 CTGACGATCCGGTCAAGGCGTCCGCCGCG-CTAAACGAGCAGTACCACTACCTGACTGCC 2082 Query 26585 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT-TCGCTGG 26633 ||||||||| ||| || | || || || ||||||||||| |||||| Sbjct 2081 TCGGTTTACTCGCAAATCGTGGCTCTGGAGAAGCAAGGCGATCACGCTGG 2032 >seq3087822 Length=6084 Score = 123 bits (136), Expect = 6e-24 Identities = 126/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 26466 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 26525 |||||||||| || ||||||||||| || || |||||||| ||||||||||| |||| Sbjct 5242 CGATGCAGGAGGCCACCGGCAAGGCCGTAAGCGAAACGGTCGCTGAGTTCTCCAAACTGG 5183 Query 26526 CCGACGAACCGGTCAAAGCCTC-GCAGCAACTCAACGAGAAATATCACTACCTGACCGCC 26584 | ||||| |||||||| || || || || || || ||| |||| || |||||||| ||| Sbjct 5182 CTGACGATCCGGTCAAGGCATCCGCCGCG-CTTAATGAGCAATACCATTACCTGACTGCC 5124 Query 26585 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT 26626 |||||||| ||| || | || || || || |||||| || Sbjct 5123 TCGGTTTATTCGCAAATTTCAGCACTGGAACAACAAGGCAAT 5082 Score = 84.2 bits (92), Expect = 5e-12 Identities = 144/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 27412 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 27471 |||||||| || || ||||| |||| || ||| || ||||| || | | ||| Sbjct 4367 GACCAGGTGACGGCGGCCTACGAGGCCGAGATCACCGCACTGGAAGCCGTCAAGGGCAAG 4308 Query 27472 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 27531 | | || |||| || ||| ||||| |||||||||||||||||||| || | | | Sbjct 4307 AAGACAACATCGGCCGCGCAGAGCATCCAGCTGGACCAGAAGATCGCCGACGC-ACGCGC 4249 Query 27532 AA-CATGGTCAAGGCGCAGAAGAAGGCCGACGCCGACCTGGAAGTCCTCCAGCTCAACGA 27590 | ||||||||||||||||||| | || ||| | | || ||||| || | ||||| Sbjct 4248 AGGCATGGTCAAGGCGCAGAAGGACGCTGACAGCCAGCTTGAAGTGCTGGCGACGAACGA 4189 Query 27591 -ACAGGGCCGCCTGAAGAAACAGG 27613 || ||| |||||| ||||||| Sbjct 4188 GACCGGG-CGCCTGGCCAAACAGG 4166 >seq3088451 Length=13260 Score = 91.5 bits (100), Expect = 3e-14 Identities = 206/300 (69%), Gaps = 10/300 (3%) Strand=Plus/Plus Query 27316 AACGCCGAGCAGAAGCTCCAGGCGCAGCAGCGCGCCGGCCTACTGA-GCTATGCGGACTA 27374 |||||| || || | || ||||||||||| || ||| | | ||| | ||||||| Sbjct 7376 AACGCCCAGAAGGAACTGGAGGCGCAGCAGAAGGCTGGCGTGGTTTCGCTGT-CGGACTA 7434 Query 27375 TGTCGCGCAGCGCGGCGAAC-TGATCAGCCAGAACAAGGACCAGGTCACCGCAGCCTATG 27433 | ||| || | ||| | |||||| |||| | |||||| | || || || || || Sbjct 7435 CGCAAAGCAACG-GTCGACCCTGATCAACCAGGAAAAGGACGATGTGACGGCCGCGTACC 7493 Query 27434 AGGGGGAAATCCAGGCGCTGGAGGCG--CTGCGCGACAAAAGTTCCACCACGGCGGCCCA 27491 ||| || ||| | || ||||||||| | || | |||| ||| ||| |||| || Sbjct 7494 AGGCTGAGATCGATGCACTGGAGGCGGCCAAGGCCAAGAAAGG--CACAACGACGGCTCA 7551 Query 27492 GCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAACAACATGGTCAAGGCGCAGAA 27551 | | ||| |||||||| ||||||||||| || || | ||||||||||| ||||| Sbjct 7552 GAGTATCCAGCTGGACCAAAAGATCGCCGATGCACGGCAGGGGATGGTCAAGGCTCAGAA 7611 Query 27552 GAAGGCCGACGCCGACCTGGAAGTC-CTCCAGCTCAACGAACAGGGCCGCCTGAAGAAAC 27610 | | || ||| | | ||| ||| | || | |||||| | ||||||||| || ||| Sbjct 7612 GGATGCTGACAGCCAGCTGACCGTCATTGCAAC-GAACGAAAAAGGCCGCCTGGAGCAAC 7670 >seq156999 Length=6365 Score = 87.8 bits (96), Expect = 4e-13 Identities = 118/163 (72%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 11520 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACGCAACAACT 11579 |||| |||||| | || ||| ||||||||||||||||| | || |||| | | Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992 Query 11580 GGCAGGGCCAGCTCCCGCACAACCCGAAGATCGAGCCCCGATTCGCCCGCTTCGACACCG 11639 |||| ||||||||| || | | ||| | | ||| || |||||||| || || || Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052 Query 11640 CGCATAACGGCATCCGCGCCCTGGCAAAGCTGCTGCTGAACTA 11682 | | ||||| ||||||||||||| ||| ||||||||| ||| Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTA 4095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115823904295486