Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq28392 152 4e-32 seq142543 111 1e-19 seq85459 84.2 2e-11 seq332822 82.4 6e-11 >seq28392 Length=738 Score = 152 bits (168), Expect = 4e-32 Identities = 275/399 (69%), Gaps = 6/399 (2%) Strand=Plus/Plus Query 12887 AAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAA 12946 || ||||| || || || || | ||||||||||||||||| || || ||||||| Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60 Query 12947 CAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTAC 13006 | | || || | || | || || | | ||| || || || ||||| |||||| Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120 Query 13007 TGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAG 13066 || ||||| ||| || ||||| || || | || ||||||| || || || | || Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180 Query 13067 tttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGA 13126 | | |||||| |||||| | || | ||| ||| ||| | ||| | | ||| Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTC---TCTGTTCCGAAGGT 237 Query 13127 TT-TG--ATAGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTA 13183 || || | || || || ||||| | || ||||| ||||||||||| || |||||||| Sbjct 238 TTGTGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTG 297 Query 13184 CTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAAT 13243 || || || || | ||||| || || || ||||| || |||||||| || | ||| ||| Sbjct 298 CTAATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAAT 357 Query 13244 ATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACT 13282 || | ||||| ||||| ||||| || || ||||| ||| Sbjct 358 ATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396 >seq142543 Length=7870 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || ||||| || ||||| || || || ||||| || |||| ||| | Sbjct 6767 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCT 6826 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || |||||||| || || ||||| | Sbjct 6827 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 6886 Query 13293 CTATCAACCTTTCACC 13308 | | || |||||| || Sbjct 6887 CCACCACCCTTTCCCC 6902 Score = 82.4 bits (90), Expect = 6e-11 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 12970 TTCTAGTAA-CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCA 13028 |||| |||| |||||||||||| |||||||| || ||||||||||| | | |||| |||| Sbjct 797 TTCT-GTAAGCAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAGAACACAATTCA 855 Query 13029 TTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065 |||| || | || |||| |||||||||||||| Sbjct 856 TTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 892 >seq85459 Length=10496 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| |||||||| || | | ||||||||||| ||||| || |||||||| || ||||| Sbjct 6854 AATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 6795 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||||| || || | | ||||||||| Sbjct 6794 GAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTC 6756 >seq332822 Length=31618 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATT 12859 |||||||||| ||||| | || |||| ||| || || | || |||||| | | Sbjct 5271 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTT-TCTGCCATAACTGCAAAA 5213 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || ||||| ||| ||||| || |||||||| || ||||| ||||| ||| Sbjct 5212 CGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTT 5153 Query 12920 TCCATAAAATCGAAAGGATTTT 12941 ||||||||||| || ||||||| Sbjct 5152 TCCATAAAATCAAAGGGATTTT 5131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414759693298422