Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 152 4e-32
seq142543 111 1e-19
seq85459 84.2 2e-11
seq332822 82.4 6e-11
>seq28392
Length=738
Score = 152 bits (168), Expect = 4e-32
Identities = 275/399 (69%), Gaps = 6/399 (2%)
Strand=Plus/Plus
Query 12887 AAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAA 12946
|| ||||| || || || || | ||||||||||||||||| || || |||||||
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60
Query 12947 CAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTAC 13006
| | || || | || | || || | | ||| || || || ||||| ||||||
Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120
Query 13007 TGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAG 13066
|| ||||| ||| || ||||| || || | || ||||||| || || || | ||
Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180
Query 13067 tttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGA 13126
| | |||||| |||||| | || | ||| ||| ||| | ||| | | |||
Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTC---TCTGTTCCGAAGGT 237
Query 13127 TT-TG--ATAGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTA 13183
|| || | || || || ||||| | || ||||| ||||||||||| || ||||||||
Sbjct 238 TTGTGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTG 297
Query 13184 CTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAAT 13243
|| || || || | ||||| || || || ||||| || |||||||| || | ||| |||
Sbjct 298 CTAATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAAT 357
Query 13244 ATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACT 13282
|| | ||||| ||||| ||||| || || ||||| |||
Sbjct 358 ATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396
>seq142543
Length=7870
Score = 111 bits (122), Expect = 1e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || ||||| || ||||| || || || ||||| || |||| ||| |
Sbjct 6767 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCT 6826
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||| |||||||||||||| || || || || || |||||||| || || ||||| |
Sbjct 6827 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 6886
Query 13293 CTATCAACCTTTCACC 13308
| | || |||||| ||
Sbjct 6887 CCACCACCCTTTCCCC 6902
Score = 82.4 bits (90), Expect = 6e-11
Identities = 78/97 (80%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 12970 TTCTAGTAA-CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCA 13028
|||| |||| |||||||||||| |||||||| || ||||||||||| | | |||| ||||
Sbjct 797 TTCT-GTAAGCAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAGAACACAATTCA 855
Query 13029 TTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065
|||| || | || |||| ||||||||||||||
Sbjct 856 TTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 892
>seq85459
Length=10496
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479
||| |||||||| || | | ||||||||||| ||||| || |||||||| || |||||
Sbjct 6854 AATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 6795
Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518
||| ||||| ||||||| || || | | |||||||||
Sbjct 6794 GAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTC 6756
>seq332822
Length=31618
Score = 82.4 bits (90), Expect = 6e-11
Identities = 105/142 (74%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATT 12859
|||||||||| ||||| | || |||| ||| || || | || |||||| | |
Sbjct 5271 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTT-TCTGCCATAACTGCAAAA 5213
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
||||| || ||||| ||| ||||| || |||||||| || ||||| ||||| |||
Sbjct 5212 CGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTT 5153
Query 12920 TCCATAAAATCGAAAGGATTTT 12941
||||||||||| || |||||||
Sbjct 5152 TCCATAAAATCAAAGGGATTTT 5131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414759693298422
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |