Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq3087968 214 7e-51 seq108461 158 5e-34 seq2704214 136 2e-27 seq254255 136 2e-27 seq3088273 98.7 4e-16 seq3085141 86.0 2e-12 seq295506 84.2 9e-12 >seq3087968 Length=6546 Score = 214 bits (236), Expect = 7e-51 Identities = 163/193 (84%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 14012 GGTTGTGTGTATGGACCCCAGCGTGCAGTCGCTTGGCGGACCCTGGACGCCCAATATTTC 14071 |||||||||||||||||| | | || |||| |||||| ||||||||||||||||||| Sbjct 1 GGTTGTGTGTATGGACCCAAAAGAACAATCGCGTGGCGGGTCCTGGACGCCCAATATTTC 60 Query 14072 GGAGTGGCCCAACGCCGCCGCCGTGTGTTCGTTGTCGCAAGTGGTCGAGACTGGTTCGAT 14131 || |||||||||| ||||| |||||||||||||||||||||| ||||||| |||||||| Sbjct 61 GGCCTGGCCCAACGACGCCGTCGTGTGTTCGTTGTCGCAAGTGCTCGAGACGGGTTCGAT 120 Query 14132 CCCACACCGGTACTTTTTGAGTGGGATGGCGTGCGCCGGGATTGTCCGCCGCGCCGAGGA 14191 || || ||||||||||||| | || ||| ||||||||||| | ||||||||||||| Sbjct 121 CCAACCGAGGTACTTTTTGAGCGCGAAGGCTTGCGCCGGGATACTGCGCCGCGCCGAGGC 180 Query 14192 GTGCGGCAAGCCG 14204 | | |||||| || Sbjct 181 GAGGGGCAAGACG 193 >seq108461 Length=6150 Score = 158 bits (174), Expect = 5e-34 Identities = 104/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 14076 TGGCCCAACGCCGCCGCCGTGTGTTCGTTGTCGCAAGTGGTCGAGACTGGTTCGATCCCA 14135 |||||||||| ||||| |||||||||||||||||||||| ||||||| |||||||||||| Sbjct 185 TGGCCCAACGACGCCGTCGTGTGTTCGTTGTCGCAAGTGCTCGAGACGGGTTCGATCCCA 244 Query 14136 CACCGGTACTTTTTGAGTGGGATGGCGTGCGCCGGGATTGTCCGCCGCGCCGAGG 14190 || |||||||||||||| | || ||||||||||||||| | ||||||||||||| Sbjct 245 CAGCGGTACTTTTTGAGCGAGAAGGCGTGCGCCGGGATACTGCGCCGCGCCGAGG 299 Score = 89.7 bits (98), Expect = 2e-13 Identities = 127/175 (73%), Gaps = 13/175 (7%) Strand=Plus/Plus Query 14420 GCGGTGCGTCGCCTCATGCCTGTCGAGTGTGAGCGATTGCAGGAGTTCCCGGACGGCTAC 14479 || ||||| || || | || || ||||| || || |||||| | | ||| |||| Sbjct 1125 GCTGTGCGGCGTCTTACTCCCGTTGAGTGCGAACGCCTGCAGGGCATGGCCGACAACTAC 1184 Query 14480 ACCGATG-TCCCGTATCACGGCGAGCCTGCTG---------CTGACGGTCCGCGCTACAA 14529 || | || |||| | | |||| ||||||||| | ||||| || |||||||| Sbjct 1185 AC-GCTGATCCCCTGGCGCGGCAAGCCTGCTGAAGAATGCCCAGACGGCCCCCGCTACAA 1243 Query 14530 GGCGATCGGCAACAGCATGGCAGT-GCCGTGCATGCGCTGGATCGGCAGGCGTCT 14583 ||||||||||||||||| ||| || ||||| | ||||||||||||||||| || Sbjct 1244 GGCGATCGGCAACAGCAAGGCCGTCACCGTG-GTTCGCTGGATCGGCAGGCGGCT 1297 >seq2704214 Length=198 Score = 136 bits (150), Expect = 2e-27 Identities = 148/191 (77%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 13885 CGTCGTCGTCTGGGAAAACGTCCCCGGCGTCCTCT-CGACAAAAGACAATGCGTTCGGGT 13943 |||| |||||||||| |||||||||||||||||| ||||||| | || || ||||| | Sbjct 9 CGTCATCGTCTGGGAGAACGTCCCCGGCGTCCTCAGCGACAAAGGG-AACGCCTTCGGAT 67 Query 13944 GCTTTCTGGCTGGGCTTGCCGGAGAAGA-TGAGCCGCTGGTCGCACCAGGGGGCCGGTGG 14002 ||||||| | | |||||| || ||||| || | |||| | |||||| ||| Sbjct 68 GCTTTCTTGGCGCGCTTGCTGGGGAAGACTGCGA-GCTGCAGCCTCCAGGGAAGAAATGG 126 Query 14003 GCGAACGCTGGTTGTGTGTATGGACCCCAGCGTGCAGTCGCTTGGCGGACCCTGGACGCC 14062 | ||||||||||||||||||||||| | | || |||| |||||| |||||||||| Sbjct 127 CAGGACGCTGGTTGTGTGTATGGACCCAAAAGAACAATCGCGTGGCGGGTCCTGGACGCC 186 Query 14063 CAATATTTCGG 14073 ||||||||||| Sbjct 187 CAATATTTCGG 197 >seq254255 Length=1937 Score = 136 bits (150), Expect = 2e-27 Identities = 193/264 (73%), Gaps = 8/264 (3%) Strand=Plus/Minus Query 13550 GTGTGCAGCGGCATCGAGGCCGCGACCGTTGCTTGGCATCCGCTCGGC-TGGAAGCCGGC 13608 |||||||||||||| || |||||||| || ||||| ||||| ||| || |||| | Sbjct 291 GTGTGCAGCGGCATTGAAGCCGCGACACAAGCCTGGCACCCGCTGGGCATGCGCGCCGCC 232 Query 13609 GTGGTTCGCTGAGATCGAGAAATTCCCTAGCGCCGTGCTGGCGCATCATTACCCCGATGT 13668 |||||||| ||||| ||| ||||| || || ||||| || || |||||||| || Sbjct 231 -TGGTTCGCCGAGATTGAGCCGTTCCCCTCGGCGGTCCTGGCCCACCACTACCCCGACGT 173 Query 13669 TCCTAACCTTGGAGACATGACGAAGATCACGCGCGC-GGTGCTGGCGCGTGAGGTCGAAG 13727 || |||| || |||||||| ||| | | ||| | ||||||||| | || || || Sbjct 172 GCCGAACCACGGCGACATGACCAAGCTGGC-CGCCCTGGTGCTGGCCGGCAAGATCCCAG 114 Query 13728 TGCCTGACGTGCTGGTCGGTGGCACGCCGTGCCAGGC--ATTCAGCCTCGCGGGTCTGCG 13785 ||| || ||||||||||| ||||| || |||||||| ||||| | || ||| |||| Sbjct 113 CGCCGGATGTGCTGGTCGGCGGCACCCCATGCCAGGCCTTTTCAG--TTGCCGGTATGCG 56 Query 13786 TGAATCCCTCTCGGATGAGCGCGG 13809 ||| |||| | || |||||| Sbjct 55 CGAAGGCCTCACCGACCCGCGCGG 32 >seq3088273 Length=8614 Score = 98.7 bits (108), Expect = 4e-16 Identities = 279/425 (66%), Gaps = 16/425 (4%) Strand=Plus/Plus Query 25304 CCGCAACCTGATCCTGAAGGCCCGCCAGCTCGGCTTTACGACCCTCATCTGCATCATCTG 25363 ||| ||| | |||||||| || |||||||| || |||||||| || | |||||| || Sbjct 3299 CCGGAACATCATCCTGAAAGCTCGCCAGCTGGGGTTTACGACGCTGGTGTGCATCGTCCA 3358 Query 25364 GCTCGACCACGCGCTGTTCAACGCCAACAGCCGGTGCGGCATCATCGCGCAGGATCGGGA 25423 | | || ||| ||||| | || || ||||| | | ||||| || | | | Sbjct 3359 GTTGGATGCAGCGTTGTTCGAGGCTGCCAA---GTGCGCCTTGATCGCTCACACACTGAA 3415 Query 25424 -GACGGCCGAGGCGCTGTTTC-GGGACAAGGTAAAGTTCGCCTACGACAACCTGCCCGAG 25481 |||| ||| |||| |||| |||| ||||| || | |||||||||||| ||||| || Sbjct 3416 CGACG--CGAAGCGCCTTTTCCGGGAAAAGGTGAAATACGCCTACGACAATCTGCCGAAG 3473 Query 25482 GCGCTNNNNNNNNNNATGCCGCTCGCC-AACTGCACGAAGGCCGAGCTGTTGTTCGCCCA 25540 | ||| | ||| ||| ||| | || | ||||||| ||||| | Sbjct 3474 GAGCTTCGCGCTGCCAACCCGG-CGCGGAACGACGCGGCCGGCGAGCTGGTGTTCAGC-- 3530 Query 25541 CANNNNNNNNNNNNTCCGCGTCGCGACGTCCGTGCGCGGCGGCACGATCCACCGCCTGCA 25600 | | ||| | || || | || ||||||||| | | | |||||| Sbjct 3531 -AAGGGCGGTTCGCTTTACGTTTCCACCTCGTTCCGTGGCGGCACGCTGCGCTACCTGCA 3589 Query 25601 CATCTCCGAGTTCGGGAAAATCTGCGCCAAGTACCCGGACAAGGCGGCCGAAGTGGTGAC 25660 | | |||||||||||||| ||||||||||||| ||| |||||||| || | || || Sbjct 3590 CGTATCCGAGTTCGGGAAGATCTGCGCCAAGTTTCCGCACAAGGCGCGGGAGATCGTCAC 3649 Query 25661 GGGCTCCATCCCGGCCGT-GCCGAAGTCGGGCATTC-TGGTCATCGAGTCGACGGCCGAG 25718 ||| || || ||| || |||| | | ||| | ||||||||||||||| || Sbjct 3650 CGGCGCCTTCGAGGCTGTCGCCGCTGAATG--TTTCGTCACCATCGAGTCGACGGCAGAA 3707 Query 25719 GGCCG 25723 ||||| Sbjct 3708 GGCCG 3712 >seq3085141 Length=3208 Score = 86.0 bits (94), Expect = 2e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 13559 GGCATCGAGGCCGCGACCGTTGCTTGGCATCCGCTCGGC-TGGAAGCCGGCGTGGTTCGC 13617 |||||||| |||||||| || ||||| ||| | ||| || |||| | |||||||| Sbjct 150 GGCATCGAAGCCGCGACACAGGCCTGGCACCCGTTGGGCATGCGCGCCGCC-TGGTTCGC 92 Query 13618 TGAGATCGAGAAATTCCCTAGCGCCGTGCTGGCGCATCATTACCCCGATGTTCCTAACCT 13677 |||||| ||| ||||| || |||||||| || || |||||||| || || |||| Sbjct 91 TGAGATTGAGCCGTTCCCCTCGGCGGTGCTGGCCCACCACTACCCCGACGTGCCGAACCA 32 Query 13678 TGGAGACATGACGAAG 13693 || |||||||| ||| Sbjct 31 CGGCGACATGACCAAG 16 >seq295506 Length=3618 Score = 84.2 bits (92), Expect = 9e-12 Identities = 126/174 (72%), Gaps = 5/174 (3%) Strand=Plus/Minus Query 25305 CGCAACCTGATCCTGAAGGCCCGCCAGCTCGGCTTTACGACCCTCATCTGCATCATCTGG 25364 |||||||||||| |||||||| | ||||| |||||||| ||| |||||||||| Sbjct 1554 CGCAACCTGATCTTGAAGGCCAGGCAGCTTGGCTTTACCACCGAGTGCTGCATCATCCAA 1495 Query 25365 CTCGACCACGCGCTGTTCAACGCCAACAGCCGGTGCGGCATCATCGCGCAGGATCGGGA- 25423 || ||| || || ||| | | || | | ||||| | | ||||| || | | | Sbjct 1494 CTGGACGCGGCTCTATTCGA-GTCAGC--CAAGTGCGCCCTGATCGCCCACACCCTGAAC 1438 Query 25424 GACGGCCGAGGCGCTGTTTCGGGACAAGGTAAAGTTCGCCTACGACAACCTGCC 25477 ||| ||| || ||||| ||||| ||||| |||| |||||||||||| ||||| Sbjct 1437 GAC-GCCAAGCGCCTGTTCCGGGAGAAGGTGAAGTACGCCTACGACAATCTGCC 1385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196807849941208