Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_005262.3
Length=63882
Score E
Sequences producing significant alignments: (Bits) Value
seq3087968 214 7e-51
seq108461 158 5e-34
seq2704214 136 2e-27
seq254255 136 2e-27
seq3088273 98.7 4e-16
seq3085141 86.0 2e-12
seq295506 84.2 9e-12
>seq3087968
Length=6546
Score = 214 bits (236), Expect = 7e-51
Identities = 163/193 (84%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 14012 GGTTGTGTGTATGGACCCCAGCGTGCAGTCGCTTGGCGGACCCTGGACGCCCAATATTTC 14071
|||||||||||||||||| | | || |||| |||||| |||||||||||||||||||
Sbjct 1 GGTTGTGTGTATGGACCCAAAAGAACAATCGCGTGGCGGGTCCTGGACGCCCAATATTTC 60
Query 14072 GGAGTGGCCCAACGCCGCCGCCGTGTGTTCGTTGTCGCAAGTGGTCGAGACTGGTTCGAT 14131
|| |||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct 61 GGCCTGGCCCAACGACGCCGTCGTGTGTTCGTTGTCGCAAGTGCTCGAGACGGGTTCGAT 120
Query 14132 CCCACACCGGTACTTTTTGAGTGGGATGGCGTGCGCCGGGATTGTCCGCCGCGCCGAGGA 14191
|| || ||||||||||||| | || ||| ||||||||||| | |||||||||||||
Sbjct 121 CCAACCGAGGTACTTTTTGAGCGCGAAGGCTTGCGCCGGGATACTGCGCCGCGCCGAGGC 180
Query 14192 GTGCGGCAAGCCG 14204
| | |||||| ||
Sbjct 181 GAGGGGCAAGACG 193
>seq108461
Length=6150
Score = 158 bits (174), Expect = 5e-34
Identities = 104/115 (90%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 14076 TGGCCCAACGCCGCCGCCGTGTGTTCGTTGTCGCAAGTGGTCGAGACTGGTTCGATCCCA 14135
|||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 185 TGGCCCAACGACGCCGTCGTGTGTTCGTTGTCGCAAGTGCTCGAGACGGGTTCGATCCCA 244
Query 14136 CACCGGTACTTTTTGAGTGGGATGGCGTGCGCCGGGATTGTCCGCCGCGCCGAGG 14190
|| |||||||||||||| | || ||||||||||||||| | |||||||||||||
Sbjct 245 CAGCGGTACTTTTTGAGCGAGAAGGCGTGCGCCGGGATACTGCGCCGCGCCGAGG 299
Score = 89.7 bits (98), Expect = 2e-13
Identities = 127/175 (73%), Gaps = 13/175 (7%)
Strand=Plus/Plus
Query 14420 GCGGTGCGTCGCCTCATGCCTGTCGAGTGTGAGCGATTGCAGGAGTTCCCGGACGGCTAC 14479
|| ||||| || || | || || ||||| || || |||||| | | ||| ||||
Sbjct 1125 GCTGTGCGGCGTCTTACTCCCGTTGAGTGCGAACGCCTGCAGGGCATGGCCGACAACTAC 1184
Query 14480 ACCGATG-TCCCGTATCACGGCGAGCCTGCTG---------CTGACGGTCCGCGCTACAA 14529
|| | || |||| | | |||| ||||||||| | ||||| || ||||||||
Sbjct 1185 AC-GCTGATCCCCTGGCGCGGCAAGCCTGCTGAAGAATGCCCAGACGGCCCCCGCTACAA 1243
Query 14530 GGCGATCGGCAACAGCATGGCAGT-GCCGTGCATGCGCTGGATCGGCAGGCGTCT 14583
||||||||||||||||| ||| || ||||| | ||||||||||||||||| ||
Sbjct 1244 GGCGATCGGCAACAGCAAGGCCGTCACCGTG-GTTCGCTGGATCGGCAGGCGGCT 1297
>seq2704214
Length=198
Score = 136 bits (150), Expect = 2e-27
Identities = 148/191 (77%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 13885 CGTCGTCGTCTGGGAAAACGTCCCCGGCGTCCTCT-CGACAAAAGACAATGCGTTCGGGT 13943
|||| |||||||||| |||||||||||||||||| ||||||| | || || ||||| |
Sbjct 9 CGTCATCGTCTGGGAGAACGTCCCCGGCGTCCTCAGCGACAAAGGG-AACGCCTTCGGAT 67
Query 13944 GCTTTCTGGCTGGGCTTGCCGGAGAAGA-TGAGCCGCTGGTCGCACCAGGGGGCCGGTGG 14002
||||||| | | |||||| || ||||| || | |||| | |||||| |||
Sbjct 68 GCTTTCTTGGCGCGCTTGCTGGGGAAGACTGCGA-GCTGCAGCCTCCAGGGAAGAAATGG 126
Query 14003 GCGAACGCTGGTTGTGTGTATGGACCCCAGCGTGCAGTCGCTTGGCGGACCCTGGACGCC 14062
| ||||||||||||||||||||||| | | || |||| |||||| ||||||||||
Sbjct 127 CAGGACGCTGGTTGTGTGTATGGACCCAAAAGAACAATCGCGTGGCGGGTCCTGGACGCC 186
Query 14063 CAATATTTCGG 14073
|||||||||||
Sbjct 187 CAATATTTCGG 197
>seq254255
Length=1937
Score = 136 bits (150), Expect = 2e-27
Identities = 193/264 (73%), Gaps = 8/264 (3%)
Strand=Plus/Minus
Query 13550 GTGTGCAGCGGCATCGAGGCCGCGACCGTTGCTTGGCATCCGCTCGGC-TGGAAGCCGGC 13608
|||||||||||||| || |||||||| || ||||| ||||| ||| || |||| |
Sbjct 291 GTGTGCAGCGGCATTGAAGCCGCGACACAAGCCTGGCACCCGCTGGGCATGCGCGCCGCC 232
Query 13609 GTGGTTCGCTGAGATCGAGAAATTCCCTAGCGCCGTGCTGGCGCATCATTACCCCGATGT 13668
|||||||| ||||| ||| ||||| || || ||||| || || |||||||| ||
Sbjct 231 -TGGTTCGCCGAGATTGAGCCGTTCCCCTCGGCGGTCCTGGCCCACCACTACCCCGACGT 173
Query 13669 TCCTAACCTTGGAGACATGACGAAGATCACGCGCGC-GGTGCTGGCGCGTGAGGTCGAAG 13727
|| |||| || |||||||| ||| | | ||| | ||||||||| | || || ||
Sbjct 172 GCCGAACCACGGCGACATGACCAAGCTGGC-CGCCCTGGTGCTGGCCGGCAAGATCCCAG 114
Query 13728 TGCCTGACGTGCTGGTCGGTGGCACGCCGTGCCAGGC--ATTCAGCCTCGCGGGTCTGCG 13785
||| || ||||||||||| ||||| || |||||||| ||||| | || ||| ||||
Sbjct 113 CGCCGGATGTGCTGGTCGGCGGCACCCCATGCCAGGCCTTTTCAG--TTGCCGGTATGCG 56
Query 13786 TGAATCCCTCTCGGATGAGCGCGG 13809
||| |||| | || ||||||
Sbjct 55 CGAAGGCCTCACCGACCCGCGCGG 32
>seq3088273
Length=8614
Score = 98.7 bits (108), Expect = 4e-16
Identities = 279/425 (66%), Gaps = 16/425 (4%)
Strand=Plus/Plus
Query 25304 CCGCAACCTGATCCTGAAGGCCCGCCAGCTCGGCTTTACGACCCTCATCTGCATCATCTG 25363
||| ||| | |||||||| || |||||||| || |||||||| || | |||||| ||
Sbjct 3299 CCGGAACATCATCCTGAAAGCTCGCCAGCTGGGGTTTACGACGCTGGTGTGCATCGTCCA 3358
Query 25364 GCTCGACCACGCGCTGTTCAACGCCAACAGCCGGTGCGGCATCATCGCGCAGGATCGGGA 25423
| | || ||| ||||| | || || ||||| | | ||||| || | | |
Sbjct 3359 GTTGGATGCAGCGTTGTTCGAGGCTGCCAA---GTGCGCCTTGATCGCTCACACACTGAA 3415
Query 25424 -GACGGCCGAGGCGCTGTTTC-GGGACAAGGTAAAGTTCGCCTACGACAACCTGCCCGAG 25481
|||| ||| |||| |||| |||| ||||| || | |||||||||||| ||||| ||
Sbjct 3416 CGACG--CGAAGCGCCTTTTCCGGGAAAAGGTGAAATACGCCTACGACAATCTGCCGAAG 3473
Query 25482 GCGCTNNNNNNNNNNATGCCGCTCGCC-AACTGCACGAAGGCCGAGCTGTTGTTCGCCCA 25540
| ||| | ||| ||| ||| | || | ||||||| ||||| |
Sbjct 3474 GAGCTTCGCGCTGCCAACCCGG-CGCGGAACGACGCGGCCGGCGAGCTGGTGTTCAGC-- 3530
Query 25541 CANNNNNNNNNNNNTCCGCGTCGCGACGTCCGTGCGCGGCGGCACGATCCACCGCCTGCA 25600
| | ||| | || || | || ||||||||| | | | ||||||
Sbjct 3531 -AAGGGCGGTTCGCTTTACGTTTCCACCTCGTTCCGTGGCGGCACGCTGCGCTACCTGCA 3589
Query 25601 CATCTCCGAGTTCGGGAAAATCTGCGCCAAGTACCCGGACAAGGCGGCCGAAGTGGTGAC 25660
| | |||||||||||||| ||||||||||||| ||| |||||||| || | || ||
Sbjct 3590 CGTATCCGAGTTCGGGAAGATCTGCGCCAAGTTTCCGCACAAGGCGCGGGAGATCGTCAC 3649
Query 25661 GGGCTCCATCCCGGCCGT-GCCGAAGTCGGGCATTC-TGGTCATCGAGTCGACGGCCGAG 25718
||| || || ||| || |||| | | ||| | ||||||||||||||| ||
Sbjct 3650 CGGCGCCTTCGAGGCTGTCGCCGCTGAATG--TTTCGTCACCATCGAGTCGACGGCAGAA 3707
Query 25719 GGCCG 25723
|||||
Sbjct 3708 GGCCG 3712
>seq3085141
Length=3208
Score = 86.0 bits (94), Expect = 2e-12
Identities = 102/136 (75%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 13559 GGCATCGAGGCCGCGACCGTTGCTTGGCATCCGCTCGGC-TGGAAGCCGGCGTGGTTCGC 13617
|||||||| |||||||| || ||||| ||| | ||| || |||| | ||||||||
Sbjct 150 GGCATCGAAGCCGCGACACAGGCCTGGCACCCGTTGGGCATGCGCGCCGCC-TGGTTCGC 92
Query 13618 TGAGATCGAGAAATTCCCTAGCGCCGTGCTGGCGCATCATTACCCCGATGTTCCTAACCT 13677
|||||| ||| ||||| || |||||||| || || |||||||| || || ||||
Sbjct 91 TGAGATTGAGCCGTTCCCCTCGGCGGTGCTGGCCCACCACTACCCCGACGTGCCGAACCA 32
Query 13678 TGGAGACATGACGAAG 13693
|| |||||||| |||
Sbjct 31 CGGCGACATGACCAAG 16
>seq295506
Length=3618
Score = 84.2 bits (92), Expect = 9e-12
Identities = 126/174 (72%), Gaps = 5/174 (3%)
Strand=Plus/Minus
Query 25305 CGCAACCTGATCCTGAAGGCCCGCCAGCTCGGCTTTACGACCCTCATCTGCATCATCTGG 25364
|||||||||||| |||||||| | ||||| |||||||| ||| ||||||||||
Sbjct 1554 CGCAACCTGATCTTGAAGGCCAGGCAGCTTGGCTTTACCACCGAGTGCTGCATCATCCAA 1495
Query 25365 CTCGACCACGCGCTGTTCAACGCCAACAGCCGGTGCGGCATCATCGCGCAGGATCGGGA- 25423
|| ||| || || ||| | | || | | ||||| | | ||||| || | | |
Sbjct 1494 CTGGACGCGGCTCTATTCGA-GTCAGC--CAAGTGCGCCCTGATCGCCCACACCCTGAAC 1438
Query 25424 GACGGCCGAGGCGCTGTTTCGGGACAAGGTAAAGTTCGCCTACGACAACCTGCC 25477
||| ||| || ||||| ||||| ||||| |||| |||||||||||| |||||
Sbjct 1437 GAC-GCCAAGCGCCTGTTCCGGGAGAAGGTGAAGTACGCCTACGACAATCTGCC 1385
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 196807849941208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |