Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq155098 150 4e-31 seq185925 145 2e-29 seq28392 132 1e-25 seq87282 125 2e-23 seq2709013 123 6e-23 seq142543 111 3e-19 seq2278510 109 1e-18 seq84207 107 4e-18 seq213981 100 6e-16 seq227710 91.5 3e-13 seq234195 87.8 4e-12 >seq155098 Length=7669 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| | |||||||| | ||| | | ||||| Sbjct 7229 ACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGTTCATCTTCC 7288 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || | || || |||||||| |||||||| |||||||| Sbjct 7289 AGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 7348 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| | ||||||||||||| ||||| ||||| ||||| || || || ||||| Sbjct 7349 ATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTC 7408 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || ||||| |||||||| ||| Sbjct 7409 CCCGTCAGGGTCTTCACAAAAATCTGCATCTTG 7441 >seq185925 Length=7279 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || |||||||| | ||| || ||||| Sbjct 308 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCC 367 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||| | || | || || || |||||||| |||||||| |||||||| Sbjct 368 AGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 427 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| ||||| ||||| || || || ||||| Sbjct 428 ATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAGTGATGGTCTTC 487 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || | || |||||||| ||| Sbjct 488 CCCGTCAGGGTCTTCATGAAAATCTGCATCTTG 520 >seq28392 Length=738 Score = 132 bits (146), Expect = 1e-25 Identities = 272/400 (68%), Gaps = 7/400 (2%) Strand=Plus/Minus Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || ||||| || |||||||| || |||||||| | || || ||| | |||||| |||| Sbjct 395 GTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGGCTCAAGAAACGAGGA 336 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGC 269272 || ||||| || | || || || | ||| | || ||||| || || ||||| ||||| Sbjct 335 CTGATGCCTGGCCTCACGTTTTCCAGTGAACTTATTAGCAGAGATGAGGGTTTGCACTGT 276 Query 269273 GACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTA 269332 ||||| || || | ||| | | || | || | ||||||||||| || | |||||| Sbjct 275 GACTTTGCCTGCCT--TATGTTCAAAC-ACCTGTTGCACAAACCTTCGGAACAGAGAGTA 219 Query 269333 TACGAAATTATAGATTCA--GCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTAT 269390 | ||||| || | ||| || ||| ||||| || || || ||||| || || Sbjct 218 AAAGAAATAATCG--TCAATGCAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCTGC 161 Query 269391 CTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTG 269450 || | | || || || ||||| ||| | ||||| | || || ||||||| | | Sbjct 160 CTGTGAAGCTCATTGGGATGAAGTGCACTTTGATGAAGCAGTACATCGAGTTCGTGGCAG 101 Query 269451 ATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTT 269510 ||||| | || || | || ||||| || | | || |||||||| ||| | Sbjct 100 ATAGACTTATGCTGGAGCTGGGCTTTAGCAAGGTTTGCAGAGTAGAAAATCCATTTGACT 41 Query 269511 TTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTT 269550 ||||||| ||||| ||| | || || ||| |||| ||||| Sbjct 40 TTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTT 1 >seq87282 Length=9775 Score = 125 bits (138), Expect = 2e-23 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| ||||| || |||||| | || || || ||||| |||||||| ||||||| Sbjct 2590 CCGTCTTCCAGTTGCTTGCCAGCATAGATCAGTCTTTGTTGGTCAGGAGGAGCTCCTTCT 2531 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| || ||||||||||||| ||||| || |||||||| || || Sbjct 2530 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGTG 2471 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| | || || || || | || |||||||| ||| Sbjct 2470 ATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTTG 2429 >seq2709013 Length=200 Score = 123 bits (136), Expect = 6e-23 Identities = 134/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | | || || || ||||| || |||||||| | ||| | || ||||| Sbjct 23 ACTAGATGAAGAGGGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 82 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || ||||||| || || || || || |||||||| |||||||| ||| |||| Sbjct 83 AGTTGCTTGCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTACCCTGG 142 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCT 104528 ||||| || ||||||||||||| ||||| ||||| | ||| || || || |||| Sbjct 143 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAAGCTCGAGAGTGATGGTCT 200 >seq142543 Length=7870 Score = 111 bits (122), Expect = 3e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| | || || ||||| ||||||||||| || ||||| || || |||||||| Sbjct 6902 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCCGGATCTTTTGCT 6843 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| || ||||| ||| | ||||| || || || | Sbjct 6842 GCTATATTCTGGCTAAAGAAAAGAGGACTCATGCCCGGACTCACTTTTTCCAATGAGCTC 6783 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 6782 ATCAGCAGAGATGAAG 6767 >seq2278510 Length=135 Score = 109 bits (120), Expect = 1e-18 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || |||||||| | ||| || ||||| ||||| || ||| Sbjct 3 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGCCA 62 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || || || |||||||| |||||||| |||||||| ||||| || ||| Sbjct 63 GCAAAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 122 Query 104483 ACATTTTCTA 104492 |||||||||| Sbjct 123 ACATTTTCTA 132 >seq84207 Length=16436 Score = 107 bits (118), Expect = 4e-18 Identities = 134/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 104375 TGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGC 104434 ||||| || |||||||| | ||| | || ||||| ||||| || |||||||| | | Sbjct 211 TGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGACTGAT 152 Query 104435 CTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACG 104494 || || || |||||||| |||||||| ||| ||||| || |||||||||||| | Sbjct 151 CTTTGCTGGTCAGGAGGAATTCCTTC------CTGGATCTTGGCCTTTACATTTTCTGTG 98 Query 104495 GTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATC 104554 |||| || | |||| ||||| || ||||| || || || || || ||||| ||| Sbjct 97 GTATTCGAGGGCTTGACCTTGAGTGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATC 38 Query 104555 TGCA 104558 |||| Sbjct 37 TGCA 34 >seq213981 Length=2920 Score = 100 bits (110), Expect = 6e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | ||| ||||||||||| || || | || || | || || ||||| | Sbjct 1325 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 1266 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | |||||| || || |||||||| | ||| ||||| || ||| Sbjct 1265 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGTACCATGTTCACCTTG 1206 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || ||||| ||| || |||||||||| Sbjct 1205 TGGTGGATCGGAATTAAGTGGGTCCCAGGAGGACA 1171 >seq227710 Length=3428 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 65781 TTACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATCTATAACACCA 65840 || || |||||||| | | | |||||||| |||||||| ||| |||||| |||||| Sbjct 1 TTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTCATCTATGACACCA 60 Query 65841 GCACCTACATCTATAAAGTAATTATACGCTAATCCAGATCGGGGAGCTATTCTACCATAA 65900 || ||||||||||| |||| || || || ||||| || ||||| | ||| ||||| Sbjct 61 GCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGCCACTCTTCCATAG 120 Query 65901 TATCCTCTAGGAACTGATATAATCAAATCAGTAAATACCAATTCTTTGTCCATGGGTTGT 65960 | || ||||| | ||| | ||||| || | |||| ||||| ||| || Sbjct 121 CACCCAGAAGGAAGGGCTATCTGAATGTCAGTTTTCACAAGCACTTTCTCCATCGGTGGT 180 Query 65961 ACGGTATAATCGTACGCGCTATATAGATCATATCCTGCAGCCCACTGA 66008 | || ||||| || || || || || || || || | || ||| || Sbjct 181 AATGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGAGGCGCACGGA 228 >seq234195 Length=9622 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| |||| |||||||||| || || || || || |||||||| | |||||| ||| Sbjct 1828 TCTTCCAGTTCCTTTCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTTA 1769 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTA 104492 ||||| ||||| || ||||||||||||| Sbjct 1768 TCCTGGATCTTGGCCTTTACATTTTCTA 1741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1105835783882788