Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq155098 150 4e-31
seq185925 145 2e-29
seq28392 132 1e-25
seq87282 125 2e-23
seq2709013 123 6e-23
seq142543 111 3e-19
seq2278510 109 1e-18
seq84207 107 4e-18
seq213981 100 6e-16
seq227710 91.5 3e-13
seq234195 87.8 4e-12
>seq155098
Length=7669
Score = 150 bits (166), Expect = 4e-31
Identities = 161/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|||||||| | || || || || ||||| | |||||||| | ||| | | |||||
Sbjct 7229 ACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGTTCATCTTCC 7288
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||| || |||||||| || || | || || |||||||| |||||||| ||||||||
Sbjct 7289 AGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 7348
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| | ||||||||||||| ||||| ||||| ||||| || || || |||||
Sbjct 7349 ATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTC 7408
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| || || || || ||||| |||||||| |||
Sbjct 7409 CCCGTCAGGGTCTTCACAAAAATCTGCATCTTG 7441
>seq185925
Length=7279
Score = 145 bits (160), Expect = 2e-29
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|||||||| | || || || || ||||| || |||||||| | ||| || |||||
Sbjct 308 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCC 367
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||| || |||||| | || | || || || |||||||| |||||||| ||||||||
Sbjct 368 AGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 427
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || ||||||||||||| ||||| ||||| ||||| || || || |||||
Sbjct 428 ATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAGTGATGGTCTTC 487
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| || || || || | || |||||||| |||
Sbjct 488 CCCGTCAGGGTCTTCATGAAAATCTGCATCTTG 520
>seq28392
Length=738
Score = 132 bits (146), Expect = 1e-25
Identities = 272/400 (68%), Gaps = 7/400 (2%)
Strand=Plus/Minus
Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212
|| ||||| || |||||||| || |||||||| | || || ||| | |||||| ||||
Sbjct 395 GTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGGCTCAAGAAACGAGGA 336
Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGC 269272
|| ||||| || | || || || | ||| | || ||||| || || ||||| |||||
Sbjct 335 CTGATGCCTGGCCTCACGTTTTCCAGTGAACTTATTAGCAGAGATGAGGGTTTGCACTGT 276
Query 269273 GACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTA 269332
||||| || || | ||| | | || | || | ||||||||||| || | ||||||
Sbjct 275 GACTTTGCCTGCCT--TATGTTCAAAC-ACCTGTTGCACAAACCTTCGGAACAGAGAGTA 219
Query 269333 TACGAAATTATAGATTCA--GCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTAT 269390
| ||||| || | ||| || ||| ||||| || || || ||||| || ||
Sbjct 218 AAAGAAATAATCG--TCAATGCAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCTGC 161
Query 269391 CTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTG 269450
|| | | || || || ||||| ||| | ||||| | || || ||||||| | |
Sbjct 160 CTGTGAAGCTCATTGGGATGAAGTGCACTTTGATGAAGCAGTACATCGAGTTCGTGGCAG 101
Query 269451 ATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTT 269510
||||| | || || | || ||||| || | | || |||||||| ||| |
Sbjct 100 ATAGACTTATGCTGGAGCTGGGCTTTAGCAAGGTTTGCAGAGTAGAAAATCCATTTGACT 41
Query 269511 TTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTT 269550
||||||| ||||| ||| | || || ||| |||| |||||
Sbjct 40 TTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTT 1
>seq87282
Length=9775
Score = 125 bits (138), Expect = 2e-23
Identities = 125/162 (77%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|||||||| ||||| || |||||| | || || || ||||| |||||||| |||||||
Sbjct 2590 CCGTCTTCCAGTTGCTTGCCAGCATAGATCAGTCTTTGTTGGTCAGGAGGAGCTCCTTCT 2531
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|||||||| ||||| || ||||||||||||| ||||| || |||||||| || ||
Sbjct 2530 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGTG 2471
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| ||||| | || || || || | || |||||||| |||
Sbjct 2470 ATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTTG 2429
>seq2709013
Length=200
Score = 123 bits (136), Expect = 6e-23
Identities = 134/178 (75%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|||||||| | | || || || ||||| || |||||||| | ||| | || |||||
Sbjct 23 ACTAGATGAAGAGGGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 82
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||| || ||||||| || || || || || |||||||| |||||||| ||| ||||
Sbjct 83 AGTTGCTTGCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTACCCTGG 142
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCT 104528
||||| || ||||||||||||| ||||| ||||| | ||| || || || ||||
Sbjct 143 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAAGCTCGAGAGTGATGGTCT 200
>seq142543
Length=7870
Score = 111 bits (122), Expect = 3e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|| |||||| | || || ||||| ||||||||||| || ||||| || || ||||||||
Sbjct 6902 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCCGGATCTTTTGCT 6843
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
||||| || ||| | ||||||||||| || ||||| ||| | ||||| || || || |
Sbjct 6842 GCTATATTCTGGCTAAAGAAAAGAGGACTCATGCCCGGACTCACTTTTTCCAATGAGCTC 6783
Query 269246 ATAAGCAGGGACGAAG 269261
|| ||||| || ||||
Sbjct 6782 ATCAGCAGAGATGAAG 6767
>seq2278510
Length=135
Score = 109 bits (120), Expect = 1e-18
Identities = 102/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || ||||| || |||||||| | ||| || ||||| ||||| || |||
Sbjct 3 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGCCA 62
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | || || || |||||||| |||||||| |||||||| ||||| || |||
Sbjct 63 GCAAAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 122
Query 104483 ACATTTTCTA 104492
||||||||||
Sbjct 123 ACATTTTCTA 132
>seq84207
Length=16436
Score = 107 bits (118), Expect = 4e-18
Identities = 134/184 (73%), Gaps = 6/184 (3%)
Strand=Plus/Minus
Query 104375 TGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGC 104434
||||| || |||||||| | ||| | || ||||| ||||| || |||||||| | |
Sbjct 211 TGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGACTGAT 152
Query 104435 CTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACG 104494
|| || || |||||||| |||||||| ||| ||||| || |||||||||||| |
Sbjct 151 CTTTGCTGGTCAGGAGGAATTCCTTC------CTGGATCTTGGCCTTTACATTTTCTGTG 98
Query 104495 GTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATC 104554
|||| || | |||| ||||| || ||||| || || || || || ||||| |||
Sbjct 97 GTATTCGAGGGCTTGACCTTGAGTGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATC 38
Query 104555 TGCA 104558
||||
Sbjct 37 TGCA 34
>seq213981
Length=2920
Score = 100 bits (110), Expect = 6e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553
|||||||| | ||| ||||||||||| || || | || || | || || ||||| |
Sbjct 1325 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 1266
Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613
|||||| || ||| | |||||| || || |||||||| | ||| ||||| || |||
Sbjct 1265 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGTACCATGTTCACCTTG 1206
Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648
| ||||| || ||||| ||| || ||||||||||
Sbjct 1205 TGGTGGATCGGAATTAAGTGGGTCCCAGGAGGACA 1171
>seq227710
Length=3428
Score = 91.5 bits (100), Expect = 3e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 65781 TTACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATCTATAACACCA 65840
|| || |||||||| | | | |||||||| |||||||| ||| |||||| ||||||
Sbjct 1 TTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTCATCTATGACACCA 60
Query 65841 GCACCTACATCTATAAAGTAATTATACGCTAATCCAGATCGGGGAGCTATTCTACCATAA 65900
|| ||||||||||| |||| || || || ||||| || ||||| | ||| |||||
Sbjct 61 GCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGCCACTCTTCCATAG 120
Query 65901 TATCCTCTAGGAACTGATATAATCAAATCAGTAAATACCAATTCTTTGTCCATGGGTTGT 65960
| || ||||| | ||| | ||||| || | |||| ||||| ||| ||
Sbjct 121 CACCCAGAAGGAAGGGCTATCTGAATGTCAGTTTTCACAAGCACTTTCTCCATCGGTGGT 180
Query 65961 ACGGTATAATCGTACGCGCTATATAGATCATATCCTGCAGCCCACTGA 66008
| || ||||| || || || || || || || || | || ||| ||
Sbjct 181 AATGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGAGGCGCACGGA 228
>seq234195
Length=9622
Score = 87.8 bits (96), Expect = 4e-12
Identities = 72/88 (82%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464
||||| |||| |||||||||| || || || || || |||||||| | |||||| |||
Sbjct 1828 TCTTCCAGTTCCTTTCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTTA 1769
Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTA 104492
||||| ||||| || |||||||||||||
Sbjct 1768 TCCTGGATCTTGGCCTTTACATTTTCTA 1741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1105835783882788
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