Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq14698 109 5e-19 >seq14698 Length=29873 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| || ||||| ||||| ||||| || ||||| ||||||||||| Sbjct 14189 GGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGATGCCACAGGCT 14130 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || || || || || || || || || ||||| || || ||||| || ||||||||||| Sbjct 14129 GAGAACCATGGGCCTGAGATCAAGGAGCACGTGAACTCACTGGGGGAGAAGCTGAAGACC 14070 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 | | || |||||| | ||||| Sbjct 14069 CTCCGGCTGCGACTGAGGCGCTG 14047 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 127174 TGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCAGAA 127233 |||||||| |||| || |||| || || ||||| || ||||| ||||||||||| || Sbjct 18876 TGCCAAGCCTTGTCGGAAGTGATCCACTTTTACCTGGAGGAGGTGATGCCACAGGCTGAG 18935 Query 127234 AATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACATTG 127293 || | || || || || || || ||||| || || ||||| || ||||||||||| | Sbjct 18936 AACTATGGGCCTGAGATCAAGGAGCACGTGAACTCGCTGGGGGAGAAGCTGAAGACCCTC 18995 Query 127294 AGACTTCGACTGCGTCGCTG 127313 | || |||||| | ||||| Sbjct 18996 CGGCTGCGACTGAGGCGCTG 19015 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 127379 AGCTTCAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACA 127438 |||| || || || || || ||||| |||||||||||||||||||| ||||||||||||| Sbjct 11881 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 11822 Query 127439 TCGAGACTTACATG 127452 | || || |||||| Sbjct 11821 TAGAAACCTACATG 11808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413866624357832