Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq14698 109 5e-19
>seq14698
Length=29873
Score = 109 bits (120), Expect = 5e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230
|| |||||||| |||| || ||||| ||||| ||||| || ||||| |||||||||||
Sbjct 14189 GGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGATGCCACAGGCT 14130
Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290
|| || || || || || || || || ||||| || || ||||| || |||||||||||
Sbjct 14129 GAGAACCATGGGCCTGAGATCAAGGAGCACGTGAACTCACTGGGGGAGAAGCTGAAGACC 14070
Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313
| | || |||||| | |||||
Sbjct 14069 CTCCGGCTGCGACTGAGGCGCTG 14047
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 127174 TGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCAGAA 127233
|||||||| |||| || |||| || || ||||| || ||||| ||||||||||| ||
Sbjct 18876 TGCCAAGCCTTGTCGGAAGTGATCCACTTTTACCTGGAGGAGGTGATGCCACAGGCTGAG 18935
Query 127234 AATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACATTG 127293
|| | || || || || || || ||||| || || ||||| || ||||||||||| |
Sbjct 18936 AACTATGGGCCTGAGATCAAGGAGCACGTGAACTCGCTGGGGGAGAAGCTGAAGACCCTC 18995
Query 127294 AGACTTCGACTGCGTCGCTG 127313
| || |||||| | |||||
Sbjct 18996 CGGCTGCGACTGAGGCGCTG 19015
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 127379 AGCTTCAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACA 127438
|||| || || || || || ||||| |||||||||||||||||||| |||||||||||||
Sbjct 11881 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 11822
Query 127439 TCGAGACTTACATG 127452
| || || ||||||
Sbjct 11821 TAGAAACCTACATG 11808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413866624357832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |