Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq3088488 390 2e-104 seq3088503 347 2e-91 seq3063309 147 4e-31 seq2959876 104 4e-18 seq3084702 98.7 2e-16 >seq3088488 Length=17142 Score = 390 bits (432), Expect = 2e-104 Identities = 1150/1755 (66%), Gaps = 93/1755 (5%) Strand=Plus/Minus Query 14896 GATTTTCACCACGGCACGCAGGTCATCGAAATTAATGACGGTACGCGTGTTATTTCCACA 14955 |||| || ||||||| || |||||||||| | || ||||| || || ||| ||| Sbjct 16622 GATTATCTCCACGGCGTGCGGGTCATCGAACTCAACGACGGCACCCGCCCCATTCGCACT 16563 Query 14956 GTAGCGACTGCGGTCGTCGGCATGGTTTGTACAGCCAGCGATGCAGATGCCACGCTATTT 15015 | | || || ||| ||||||||||||| || || ||||| || |||| | ||| Sbjct 16562 ATTCCCACCGCAGTCATCGGCATGGTTTGCACCGCTGAAGATGCGGAC-CCACTCGTTTT 16504 Query 15016 CCC-CTCAATGAACCGGTACTGATTACCAATGTGCAAAGCGCCATTGCGAAAGCCGGTAA 15074 ||| || | || || || || ||||| ||||||| |||| | | || ||||| Sbjct 16503 CCCTCTGGACACTCCAGTCCTCATCACCAACGTGCAAACCGCCGTCGGCAAGGCCGGCGT 16444 Query 15075 AAAAGGCACGCTGGCTGCATCACTGCAGGCCATCGCAGACCAGTCAAAACCCGTCACTGT 15134 || ||||| |||||||| ||||| | |||||| |||||| | || || | | | Sbjct 16443 CAAGGGCACCCTGGCTGCCAGCCTGCAAGGCATCGCCGACCAGACCAAGCCTTACGTTAT 16384 Query 15135 TGTTGTACGTGTTGAGGATGGAACCGGCGATGACGAGGAAGCTGCGCTCGCACAGACTGT 15194 || ||||| || | || || | | ||| | ||| || || || ||| | || || Sbjct 16383 CGTGGTACGGGTCAAAGAAGGCGCTGACGAAG-CGACGA--CTACGAGCGCCCTGATTG- 16328 Query 15195 TTCCAACATTATCGGAGGTACGGATGAGAACGGTAAATACACCGGTATCAAGGCTCTCCT 15254 | ||||| | |||| |||||||||| || || ||||| || Sbjct 16327 --------------GCGGTACAACACCAACCGGTCAATACACCGGCATGAAAGCTCTGCT 16282 Query 15255 GACTGC----TCAGGCCGTCACCGGCGTCAAGCCGCGTATTCTTGGGGTGCCGGGGCTGG 15310 | || ||| || || ||| | | |||||||| ||||| ||||| || || | Sbjct 16281 CGCAGCCAAATCACGC-GTG---GGCATGACTCCGCGTATCCTTGGCGTGCCAGGCCTCG 16226 Query 15311 ATACTAAAGAGGTCGCGGTCGCGCTTG-CGTCGGCTGCCATTAAGTTACGTGCATTTGCT 15369 | | | || || ||| || | || | | |||| | | || || ||||| Sbjct 16225 ACAGTTTGCCAGTAGCCACCGCCCTCGGCGCCATC-GCCAAAGACCTGCGCGCCTTTGCA 16167 Query 15370 TACGTCAGCGCGTGGGGATGTAAGACTATTTCCGAAGCGATGGAATATCGTAAAAATTTC 15429 ||||| ||||| ||| || || || | || | ||| || || | || ||| Sbjct 16166 TACGTAAGCGCCTGGAACTGCAAAACCAAGGAAGAGGTAGTGGCGTACCGCGAGAACTTC 16107 Query 15430 AGCCAGCGCGAGCTGATGGTTATCTGGCCTGATTTCCTCGCGTGGGACACCGTCAAAAAT 15489 | ||||| ||||||| || ||||| || ||||| |||||||| |||| || Sbjct 16106 GGTGCCCGCGAAATGATGGTGATTTGGCCGGACTTCCTGAACTGGGACACTGTCACCAAC 16047 Query 15490 ACCACCGCAACGGCTTACGCCACTGCGCGTGCACTCGGCCTGCGTGCTTACATCGACCAG 15549 | ||||| | |||| ||| || || || |||||||| || || | |||||||| Sbjct 16046 AAGACCGCCAGCGCTTCGGCCGTGGCCCGCGCCCTCGGCCTTCGCGCCAAGATCGACCA- 15988 Query 15550 ACTGTCGGCT-GGCACAAAACCCTGTCTAACGTTGGTGTACAGGGCGTTACCGGCATCAG 15608 | | ||| | |||| ||||||||||| ||||| | || ||||| ||||| ||||| Sbjct 15987 AGAGACGGGTTGGCATAAAACCCTGTCCAACGTGGCCGTGAGTGGCGTGACCGGTATCAG 15928 Query 15609 CGCCTCAGTGTTCTGGGATTTGCAGGCATCCGGCACCGATGCTGACCTGCTCAACGAGGC 15668 |||| |||||||||||| |||| | | |||||| || || |||||| Sbjct 15927 CGCCGACGTGTTCTGGGATCTGCAAAACCCAGCCACCGACGCCAACTACCTCAACAGCAA 15868 Query 15669 CGGGGTTACAACGCTGGT--ACGCAAGGACGGTTTCCGCTTCTGGGGTAACCGCACCTGC 15726 || || || || ||| | |||| | ||||||| ||||||||||||| |||||||||| Sbjct 15867 CGACGTCACCACCCTGATCAACGCCA--ACGGTTTTCGCTTCTGGGGTAGCCGCACCTGC 15810 Query 15727 TCGGATGACCCGCTTTTTCTGTTTGAGAACTACACTCGCACCGCGCAGGTACTGGCCGAC 15786 ||||||||| | || || || |||||||| |||||||||||| | || || ||| Sbjct 15809 AGTGATGACCCGTTGTTCGCCTTCGAAAACTACACCCGCACCGCGCAGATCCTCGCGGAC 15750 Query 15787 ACGATGGCCGAGGCGCACATGTGGGCGGTCGACAAGCCCATTACCGCCACGCTCATTCGT 15846 || |||| ||| |||||||||||||| || ||| || || |||| | || | || Sbjct 15749 ACCATGGGCGAAGCGCACATGTGGGCAGTTGACCGCCCTATGCACGCCTCCCTGGTACGC 15690 Query 15847 GACATTGTTGACGGCATTAACGCCAAATTCCGCGAGCTGAAATCAAACGGCTACATCGTG 15906 ||| | || || ||| | | |||||| | |||||| ||||||| | |||||| | | Sbjct 15689 GACCTGGTCGAAGGCGTAAGCGCCAAGATGCGCGAGTTGAAATCCCAGGGCTACCTGATC 15630 Query 15907 GAGGGTAAATGCTGGTTCGATGAGGA-ATCGAACGACAAGGAAACCCTCAAGGCCGGGAA 15965 | || | |||||| | || || ||| ||| ||| || |||||||||||||| || Sbjct 15629 GGCGGCAGTTGCTGGAACCCGGACGACATC-AACACCAAAGACACCCTCAAGGCCGGCAA 15571 Query 15966 ACTGTATATCGACTACGACTATACACCGGTTCCGCCACTGGAAAGCCTGACCCTGCGCCA 16025 || | | || |||||||| || || || |||||||| ||| ||| ||| | ||||| Sbjct 15570 GCTCTGGCTTGATTACGACTACACCCCCGTGCCGCCACTTGAAGACCTCACCTTCCGCCA 15511 Query 16026 GCGTATCACCGATAAATATCTGGTGAATCTGGCCGAATCGGTCAACAGCTAA-------- 16077 ||| |||||||| || ||| | | | ||| | ||| ||||||| Sbjct 15510 GCGAATCACCGACCGTTACCTGATCGACTTCGCCAAGGGCATCAGCAGCTAAACCGGGTC 15451 Query 16078 -----------GGAG-----CCTGA---------------AACA---ACATGGCACTACC 16103 |||| ||||| |||| ||||||| | || Sbjct 15450 TCCCCGCGAGGGGAGTTCACCCTGAACACGTATCCCGGAGAACACCGCCATGGCAATGCC 15391 Query 16104 CCGTAAACTCAAATACCTGAATATGTTCAATGACGGCCTCAGCTACATGGGTGTTGTTGA 16163 || || |||||| |||| || |||||||||||||| |||||| | || ||| ||| Sbjct 15390 TCGCAAGCTCAAAAACCTCAACCTGTTCAATGACGGCAACAGCTATCTCGG-CTTGGTGA 15332 Query 16164 A-TCCGTGACGCTGCCGAAACTGACCCGCAAGCTCGAAAACTATCGCGGCGGCGGTATGA 16222 | ||| | || ||||| || ||||||| | ||| |||||||||||||| |||| Sbjct 15331 AGTCCCTCACCCTGCCCTCCCTCGGCCGCAAGATGGAAGCGTATCGCGGCGGCGGCATGA 15272 Query 16223 ATGGCGCGG-CAGCGATTGACCTCGGCCTCGACGATGATGCGCTCACCGTCGAATGGTCT 16281 ||||| ||| || | |||||| ||| | ||| || | || |||||||| Sbjct 15271 ATGGCCCGGTCAAAG-CTGACCTGGGCATGTCCGACGACGGCATCCAGTTCGAATGGAAG 15213 Query 16282 GTCGGTGGCCTGCCTGATGTG-GCTCTGTGGGCGCAGTACGCCGCCCCGGGCGCTGATGC 16340 ||||||||| ||| || |||| || | |||| || ||| ||| Sbjct 15212 ACCGGTGGCCT---CGATCTGATCTCTCTGCG-TCAGTTCGGCGCGGTCAACGCCTCCAG 15157 Query 16341 TGTGCCGCTGCGTTTTGCTGGTTCTTACCAGCGTGACGACACCGGCGAAATCGTGGCGGT 16400 |||| | ||||| || |||| ||||||||| |||||||| |||||| || || Sbjct 15156 TGTGGCCCTGCGATTCTCTGGCCCTTACCAGCAAGACGACACAGGCGAAGTCAGCAATGT 15097 Query 16401 CGAGGTGGTCATGCGTGGCCGTCATAAAGAAATCGACGGCGGCGAGAATAAGCAGGGTGA 16460 || ||||| ||||||||||||| || ||||| ||||| ||| || || Sbjct 15096 GGAAGTGGTTGTGCGTGGCCGTCACGAAACCATCGAGATGGGCGATGCCCAGCCCGGCGA 15037 Query 16461 AAACACCTCGACCAAAC--TGTCGACTGTCTGCACCTACTACCGCCTCACGATTGATGGC 16518 |||| || || | || | || ||||| ||||||| || || | |||||| Sbjct 15036 GGACAC--TGAACACTCCATGACCACCACCTGCAGCTACTACAAGCTGACCGTAGATGGC 14979 Query 16519 AGCGACGTCATCGAAATCGACACCGTCAACATGGTCGAGAAGGTGAACGGCGTCGACCGT 16578 || ||||||| ||||| ||||| | ||||||||||| ||||| || ||| Sbjct 14978 GAAGAAATCATCGAGATCGATCTGCTCAACTTTGTCGAGAAGGTCAACGGTGTGGACATG 14919 Query 16579 CTGGAACAGCACCGC 16593 ||||| |||||||| Sbjct 14918 CTGGAGAAGCACCGC 14904 >seq3088503 Length=21467 Score = 347 bits (384), Expect = 2e-91 Identities = 1031/1557 (66%), Gaps = 45/1557 (3%) Strand=Plus/Minus Query 2011 AAGAGGTTCGTTTAACAGGGCGTGCATGGTCGCCCATGCGATATCGGCGTGACTGGCTTC 2070 ||| ||||||||| || ||||| | |||||| || | ||||| || | || | Sbjct 11492 AAGCGGTTCGTTTTGCAATGCGTGAAATAGCGCCCAGGCCAGGTCGGCATGGCCGGTGTT 11433 Query 2071 CTCGGTGCGGCTGGCCTCATAGGTAGCGCTG-CGCCCGC-TGCTGGTCATGGTTTTGCGG 2128 ||| |||| | || ||||| | ||| || |||| ||| ||| | || |||||| Sbjct 11432 GTCGTTGCGCCCTGCGGTGTAGGT-GTACTGGCGACCGCCTGC-GGTGACCGTCTTGCGG 11375 Query 2129 ATGGACATAAACGACTGCGTGACGTCGGTTGCCCCGGCGTCGTATTCCAGACAGCCGCGG 2188 || | ||| | |||||||| | |||||| |||||||||| | ||||| | |||| Sbjct 11374 ATCGCCATCATCGACTGCGCCATGTCGGTCCACCCGGCGTCGAACTCCAGCCGGCCGTTA 11315 Query 2189 CGAATGGTGTCTTTCGCCTTGAGCACCATTGCG-GTTTTCATTTCTGGCGTGTAACGGAT 2247 | || ||| | ||||| ||||||| ||| ||||| | ||| |||| || | || Sbjct 11314 TGGATCACGTCATAGGCCTTCAGCACCAG-GCGTGTTTTGACTTCGGGCGAATAGCTGAA 11256 Query 2248 ACCGCGAGCCGCCGGGTAGAATGAACGCACCAACTGGAATACACCGAGACCGAGGCCTGT 2307 | | |||||| |||| ||||||| ||| || ||| ||| || || || Sbjct 11255 GGTGGTCACAGCCGGGAAGAACTGGCGCACCAGCTGCGCCACGCCGCTACCCAGCCCGGT 11196 Query 2308 TGCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGGATGCCTTCTGC 2367 | ||||| ||||| || || ||| || || | ||| | | || Sbjct 11195 GACATCAATCCCGATATAGGTCACCCAGTAGCGGTCGCAGACGTTTTTGATAAATGCCGC 11136 Query 2368 CTGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACC 2427 ||| || |||||||||||||| | ||||| |||||||| | ||| || ||||| || Sbjct 11135 CTGGGCCGCAAAGTCCATGCCCCGGAATTGGTGCCGCTCCAGGACGCGGAATTTGCCGCC 11076 Query 2428 CGAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTGTGGGACGGGTC 2487 || |||| ||||||||| | || || |||| | || ||||| | | ||||| Sbjct 11075 CGGTACCAGCGGCGGCGCAACCACCACCAGCCCGGAGCAATCACCGGTTTCCGCTGGGTC 11016 Query 2488 GTAGCCAATCCAGACCGGGCGTGAGCCGAATGGATGGTCGGCGAACGGGGCGAAGTCCTC 2547 |||||| ||||| ||| | || ||||| || | |||||| || | ||||||| Sbjct 11015 GTAGCCGATCCATACCTGACGGTCACCGAACGGCCGCATGGCGAATGGCTTGTAGTCCTC 10956 Query 2548 ---CCATGTTTCCATC--AC-GTCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAATAC 2601 |||| || | | || |||||||||||||| ||||||| | | ||||| || | Sbjct 10955 TGCCCAT---TCAACCCAACTGTCGACCATGCAGCTCTGCAGCAACGCCAACGGAAAGAT 10899 Query 2602 AGATGCCTT-ATCGTCGACAAACTCGCACATAAACAGGTTTTTAAAGTCCTCATCACTGT 2660 | || || |||||| |||||||| ||||| |||||||| || ||||| |||| Sbjct 10898 -GCTGGCTCCATCGTCAACAAACTCACACATCAACAGGTTGGCGAACGCCTCAGGGCTGT 10840 Query 2661 TTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAA 2720 || || | | || || | ||||||||| ||||| ||| |||||| | Sbjct 10839 ACTCCCGACGCAACTCCTCAATGTCGAACAGATCACAGCCGCCGTGCTCTGCGTCCAGGA 10780 Query 2721 TAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGC--GAGCGCGCT 2778 | ||||| |||||||||||| | ||| |||| ||| | | || | |||||| | Sbjct 10779 TGGTGACGATCTGCCGCCACAACCGGTCCTCGCA--GAACCGCCCCTGTTGGAGCGCCCC 10722 Query 2779 GTGACTGATGTCGATTTCGATGCGGTCAGCAGCACTGGCGCGCCCCTTGTTGAACAGCTC 2838 ||| | ||||| | | || | | || || |||| ||| |||||||| |||| Sbjct 10721 GTGGGAAACGTCGACCTTGGTGTGTTGCGCCGC--TGGCTTACCC-TTGTTGAAGCGCTC 10665 Query 2839 GCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTGA 2898 ||| | |||||||| || || | || |||| |||| || ||||| ||||| ||| Sbjct 10664 GCCGGTCCAGAAGGTGTAGGCCTCATGGGCCATGCTGGACGGCGTCGAGAAGTAGGTTTT 10605 Query 2899 GCGCAGATGCTTTTGCGAGGCCATGCCCGAGGCGACTTTGCGCAGCTTCTGAAAATTCGG 2958 |||| | ||| ||| |||||||||||| ||||| ||| ||| | || ||| || Sbjct 10604 GCGCCACTTCTTGTGCATGGCCATGCCCGAAGCGACCTTGTTCAGTTCCTCAAACTTGAA 10545 Query 2959 GATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGGAATT 3018 ||||||| | ||| |||| || | | ||||| | || ||| ||||| | ||| Sbjct 10544 CGTCCAGAAGAATTCGTCGAAGTAGAAATTGCCGTGGTAGCCCTGGGCGGTACGCGCATT 10485 Query 3019 GGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATGACAATCGGGTCGCCAGTCAG 3078 ||| ||||| |||| ||||| ||||||||| | | || || || || || || ||||| Sbjct 10484 GGTACCGAGGAAAAACAGCTCGGCGCCGTTG--GGCAAT-ACGATGGGATCCCCCGTCAG 10428 Query 3079 GTCGA---CGTCAACCAGTCGCGCAAACTGGAT-GATGTATTCCCGGAACACGTAAGCCT 3134 |||| || |||| || ||||| || | |||||| | || |||| || || | Sbjct 10427 CTCGACACCGATAACCTCACGGGCAAA-TGCCTGGATGTACCCGCGAAACAGATAGGCTT 10369 Query 3135 GCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGCAGTG 3194 | |||| || ||||| || ||||| || | ||||| | ||||| || | | Sbjct 10368 GGTTTTTCGATGCGGACAGGAAGATCTGATTGCGCCCGGTTTCCAGCGCATCAAGAAACG 10309 Query 3195 CCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGCGAATAC 3254 ||||||||| |||||| | |||||||| ||||| ||| |||||| || ||||| | | Sbjct 10308 CCTCGCGGGCAAAGTAATAGGTCGCGCCGATCTGCCGGCTTTTGAGGATGACGCGAGTCC 10249 Query 3255 GGTGCGCCAGT-CCTGCCCGGTACCACTGCAACTGGTATTCGAAAGACTGGTCGAAGAAA 3313 | || | | || ||||||||||| | |||||| |||||| | ||||| || Sbjct 10248 GTTG----ATTGCCAGCCCGGTACCAGTCTTTCTGGTAGTCGAAACAGCCGTCGATAAAC 10193 Query 3314 ATTTCTTCCAGCTTTGCGACAGCCTCATCGCTGAAAAAGTTCTTTTTCGGCCTCTTAC-G 3372 ||| || | ||| ||| ||||||| | ||| |||| || || || | Sbjct 10192 GCTTCACGCAACAGCTCGATCTGCTCTTCGCTGATATCGTT-TTTTGGGGTCTTTTTCTT 10134 Query 3373 CTCCCCCTTGTTACGGTTGGCAACGTTGGGGTTAAGGTCGGCCTCGTTGCCGGTCTGGCT 3432 | |||| ||| || || || | ||| ||||| || |||| ||| | || | | || Sbjct 10133 CGGACCCTCGTTGCGTTTAGCCAGGTTAGGGTTGAGCTCGGTTTCGGTACC-GCCGCCCT 10075 Query 3433 G-TAGCGGTTGACGCGCGCCAGTCGCTCAATCTGCCGCCCGAGCAGGTCAATCTCTTTGA 3491 | |||| | | | ||| | || || | || || ||||| ||||| || |||| Sbjct 10074 GAAAGCGCTGAATTCTGGCCTGGCGTTCCAATTGGCGGTGCAGCAGATCAATTTCCTTGA 10015 Query 3492 AGTCGCCGCCTGACTTTTGC--GGCTTGGCGATGAGCTGAATCAGGCGCGCCTCAAG 3546 |||| ||||| || |||| |||| ||| ||||| | || ||||| || || Sbjct 10014 AGTCCCCGCC--GCTCTTGCTTTCCTTGAGGATCAGCTGCACCAACCGCGCTTCCAG 9960 Score = 118 bits (130), Expect = 2e-22 Identities = 199/288 (69%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 5504 TATCAGGATGACCCGAACCTCGTCGCCATTGTTGGTCGTAAGCTGCTGGCTGACAAATAT 5563 || ||||| ||||| | || || | || ||||| | |||||||| ||||| ||| Sbjct 8099 TACCAGGAAGACCCTGATCTGGTGGTGATCTGCGGTCGCCAACTGCTGGCCGACAAGTAT 8040 Query 5564 TTTCCTCTGGTGAACAAACAGCAGGAGAACAGCGAGTCGCTCGCGGCAGATATCATCATC 5623 || || | | |||||| | | | | | || ||| || || |||||| ||| | Sbjct 8039 TTCCCGATCATCAACAAAGACAACGCGCCGACTGAAATGCTGGCCGCCGATATCGTCACC 7980 Query 5624 AGCCAGAAGCGCATCGGCAACCTGCCTGCTGTGCGCGTGCCGTACTTCCCGGCGAATGCC 5683 || || |||||| | ||||| |||| || ||||||||||| ||||||||| || | Sbjct 7979 AGTCAAAAGCGCTTGGGCAATTTGCCAGCCGTGCGCGTGCCTTACTTCCCGCCGCGCGGG 7920 Query 5684 GTACTGGTAACCACTCTGGAAAACCTCTCTATCTATTTTATGGATGAGAGCCACCGCCGA 5743 | ||||| |||| ||||||||||| || ||||| | ||| | |||| |||||| Sbjct 7919 TTGCTGGTCACCAAGCTGGAAAACCTGTCGATCTACTGGCAGGAAGGCAGCCGCCGCCGC 7860 Query 5744 AGCATTGATGAGAACCCGAAAAAAGACCGCGTGGAAAACTACGAGTCG 5791 | | | | || || | || |||||| | ||||||||||||||| Sbjct 7859 ACCGTCGTCGACAATGCCAAGCGTGACCGCATCGAAAACTACGAGTCG 7812 Score = 86.0 bits (94), Expect = 1e-12 Identities = 193/290 (67%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 433 AAGTCATCCTTTGTGGCGACCTCGCTCAGTGGCACGATTTTTATGCCGTCCGGTTTCCCG 492 || |||||||| | || ||||| || | || | | | ||| |||||| || ||| Sbjct 12324 AATTCATCCTTGGCCGCCACCTCACTGACCGGGATCAGCTGTATCCCGTCCTTCTTGCCG 12265 Query 493 TTCGGTGAGTAGAAAAACAGGTTTTTAAAGTTGCCGAGCCCTTTAGAATTACGCATTGCA 552 | || || || | ||||| ||| ||| ||||| |||| || || | | || Sbjct 12264 GTGGGCGAATACACAAACAAGTTGCGAAAATTGCCTGGCCCCTTGGAGTCCTTGAGAGCC 12205 Query 553 TCGCGCAGCGATTCGACGTCAGTCGCGCTTTGCGCCGGGTCAGTCACATACATGATGTAA 612 | ||||| | |||| || || | | || || | || |||| || | ||| | Sbjct 12204 TTGCGCAAAGCGTCGATATCGGTTTCAGTCTGTGCGGCATCGGTCATGTAGAGAATGAAG 12145 Query 613 CCTGCGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTCGCGGATTCATTCAGC 672 || ||||| ||| |||| ||| |||||||||||||||| ||| || ||||| || ||| Sbjct 12144 CCGGCGTGACTGCCATTCTCGTAGTACTTGCGGCGGAACAACGTGGCCGATTCGTTGAGC 12085 Query 673 CACGCAGAATTAAGCGCGCTGAGATATTCAGGCAGGCCGTAAATCTCCTG 722 |||| || | | || || | | || |||| ||| ||||||||||| Sbjct 12084 AACGCCGACTGCAAGGCACTAATCCACTCCGGCAAGCCATAAATCTCCTG 12035 >seq3063309 Length=1409 Score = 147 bits (162), Expect = 4e-31 Identities = 808/1266 (64%), Gaps = 65/1266 (5%) Strand=Plus/Minus Query 2012 AGAGGTTCGTTTAACAGGGCGTGCATGGTCGCCCATGCGATATCGGCGTGACTGGCTTCC 2071 || ||||| || ||||||||||||||| ||| ||| ||||| |||||||| | || | Sbjct 1231 AGGGGTTCATTGAACAGGGCGTGCATGATCGACCAGGCGATGTCGGCGTGGCCGGTGGCG 1172 Query 2072 TCGGTGCGGCTGGCCTCATAGGTAGCGCTGCGCCCGCTGCTGGTCATGGTTTTGCG---G 2128 || ||||| || ||||| | ||| |||||| |||| ||| ||| | Sbjct 1171 TCAGTGCGCGAAGCGCTGTAGGTGAC-CTGG--CCGCTGGTGGT---GGTGCCGCGCTTG 1118 Query 2129 ATGGACATAAACGACTGCGTGACGTCGGTTGCCCCGGCGTCGTATTCCAGACAGCCGCGG 2188 |||| || |||| ||| | || |||||| |||||||| |||| | | || | Sbjct 1117 ATGGTCAGGAACGCCTGTGCGATGTCGGTCCAACCGGCGTCCCATTCGATGCGGCTCCCC 1058 Query 2189 CGAATGGTGTCTTTCGCCTTGAGCACCATTGCGGTTTTCATTTCTGGCGTGTAACGGATA 2248 | || ||||| | || ||||| |||| || | |||| | || | ||||| |||| Sbjct 1057 TGGATCGTGTCCTGGGCTTTGAGTACCAGTGTGTTTTTGGTCTCGAGGCTGTAATGGAT- 999 Query 2249 CCGCGAGCCGC---CGGGTAGAATGAACGCACCAACTGGAATACACCGAGACCGAGGCCT 2305 ||| | ||| ||||||||| ||||||| | || |||||| |||| || Sbjct 998 -CGCT-GTCGCACGCGGGTAGAAGTCGCGCACCAGGTCAAACACACCGTAGCCGATACCG 941 Query 2306 GTTGCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAG---CCTG--CGGAT-- 2358 |||| || |||||||||| | |||||| | ||| || || | || | | | Sbjct 940 GTTGTATCGATGCCGATGTGCTGCACGTTGAAACGCTCGGTAAGTTTCTTGACCTGGTCG 881 Query 2359 GCCTTCTGCCTGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAA 2418 |||| | | || || | | ||| ||| |||| || ||||| ||||| || Sbjct 880 GCCTGGTACTTGAACGACT--GCCCACGCCA----ACTG-TGTTTTTCCAGGATGCGGAA 828 Query 2419 CTTGCCACCCGAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTGTG 2478 || | || | ||| ||||| |||| || || || ||| ||||| |||| | Sbjct 827 TTTCGCTCCGGGTTCCAGTGGCGGAGCGACCACCACGCACGTGGCGTCGTCGCGGGTGCG 768 Query 2479 GGACGGGTCGTAGCCAATCCAGACCGGGCGTGAGCCGAATGGATGGTCGGCGAACGGGGC 2538 | ||| |||||||||| ||| ||||||| |||||| || | || ||| Sbjct 767 GCTCGGATCGTAGCCAAGCCACACCGGGCTGTTGCCGAAAGGTCGATCCAGTTCAGGGTT 708 Query 2539 GAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAA 2598 | |||||||||| | || |||| || |||| ||| || | || ||| Sbjct 707 GTAGTCCTCCCACAA---CGACAGGTCGGAGTAACACCGCTCCAGGTCTTTGAGGCCGAA 651 Query 2599 TACAGA-TGCCTTATCGTCGACAAACTCGCACATAAACAGGTTTTTAAAGTCCTCATCAC 2657 | || || | ||||| |||| ||| ||||| | | || | || || Sbjct 650 GGCGCTCTGGCTGCT-GTCGATGAACTTGCAGTAGAACAGCTGCTGGAATTTGTCTTCGT 592 Query 2658 TGTTTTCGCGTCTG-AGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCC 2716 || || | ||| || || |||||||||||||| |||||| ||||| | |||||| Sbjct 591 CGTACTCCAG-CTGCAGTTGCTCGAGGTCGAACAGATCGCAGCCGCCGGCTATGGCGTCG 533 Query 2717 TCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCG 2776 || | |||| | | ||||| || ||||| | ||| | | || | | || Sbjct 532 TCCAGGGTGATGGTTTTGCGCCATTGGCCGTCGGGGCACA-ATGCGCCCTGG-------- 482 Query 2777 CTGTGACTGATG--TCGATTTC---GATGCGGTCAGCAGCACTGGCGCGCCCCTTGTTG- 2830 ||| ||| | ||| | | ||| | | || || ||||| ||||| Sbjct 481 --GTGTATGACGCCTCGGTGGGCCAGGTGCCGCCGGCCTTCTTGCCGCGCTTGCTGTTGC 424 Query 2831 --AACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAA 2888 || |||||| |||||||| || || || ||||| | | | || ||||||| Sbjct 423 GGAATTCCTCGCCCGACCAGAACGGGTACGCTTGGTGCGAGACTGCGCTGGGCGTCGAAA 364 Query 2889 AGTAAGTTGAGCGCAGATGCTTTTGCGAGGCCATGCCCGAGGCGACTTTGCGCAGCTTCT 2948 |||| ||| |||| | ||| || | | ||||| | ||| || ||| || || | Sbjct 363 AGTAGGTTTTGCGCCACTTCTTGTGGGTGCCCATGGCACTGGCCACGGTGCTGAGTTTGT 304 Query 2949 GAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGCGCGG 3008 || | | ||||| || |||||||| || | || ||| | | || ||| |||| Sbjct 303 CGAAGTCACGTATCCAAAAATACTCATCGACGTAGACGTGGCCATGGTAGCCCTGGGCGG 244 Query 3009 TGTTGGAATTGGT-GCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATGACAATCGGG 3067 || || |||||| | | ||||| ||||| ||||||||| || ||| ||||| Sbjct 243 TGCTGCTATTGGTCGACAAGAAACG-CAGCTCGGCGCCGTTGCTGAGCGTGA---TCGGG 188 Query 3068 TCGCCAGTCAGGTCGACGTC-AACCAGTCGC---GCAAACTGGATGATGTATTCCCGGAA 3123 | ||| ||||| |||| ||| ||||| | || ||||||||||||||||| ||||| Sbjct 187 TTGCCGGTCAGCTCGATGTCGAACCACT-GCTTTGCAAACTGGATGATGTAACTGCGGAA 129 Query 3124 CACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGC 3183 | | | ||||| ||||||||||| || | |||||| | ||||||| | || Sbjct 128 AATTTCCGACTGCGAGCGGCTGGCCGACAGGAACACCTGGTTGTCGCCGGTCAGCACGGC 69 Query 3184 GCGCAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAAT 3243 | || | || |||| || |||||| ||||| ||| | ||||||| ||| || || Sbjct 68 GTCCATGAACGCTTCGCCGGCGAAGTAGTACGTCAGGCCCACCTGGCGGCTTTTCAGGAT 9 Query 3244 ATCGCG 3249 | ||| Sbjct 8 GTTGCG 3 >seq2959876 Length=477 Score = 104 bits (114), Expect = 4e-18 Identities = 222/332 (67%), Gaps = 10/332 (3%) Strand=Plus/Minus Query 11733 AACCCTGACACCTGTCCGGAAAATTTGCTGCCGTGGCTGGCGTGGGCGTTTTCTGTCGAC 11792 ||| |||| ||||| |||| | ||||||||||| ||||| ||||| | || || || Sbjct 330 AACGCTGATACCTGCCCGGTACATTTGCTGCCGCATCTGGCATGGGCATGGTCGGTGGAT 271 Query 11793 CGGTGGGATGAGAACTGGCCGGAGGGAACAAAACGTGCCGTTATCCGTGATGCATATTTC 11852 || |||||| | ||| | |||| || ||||| |||| ||| | | |||| | Sbjct 270 CGCTGGGATTACCGATGGACCGAGGCGACCAAACGCGCCGCCATCAAGGCCTCTTATTAC 211 Query 11853 ATTCACTGCCACAAGGGGACTATCGGCGCAATCCGTCGGGTAGTGGAGCCTCTCGGCTAT 11912 || || ||||||||| || |||||||| | || || || || |||||||| ||||| Sbjct 210 ATACATGCCCACAAGGGCACCATCGGCGCGTTACGCCGTGTGGTAGAGCCTCTGGGCTAC 151 Query 11913 GTCATCAATGTAACGGAATGGT--------GGGAAAGCAGCGACCCGCCCGGCACATTCC 11964 | ||| | | | || |||| || | || |||| || ||||| || Sbjct 150 CTGATCGAGATTATCGAGTGGTTCAACATGAGGCCCGAAGGGACC--CCAGGCACCTTTG 93 Query 11965 GGCTTGATATCGGGGTGCTTGAAAGTGGCATTACCGAGGAAATGTATTTCGAAATGGAAC 12024 | | | |||||||| | || | || || || |||||||||||| || |||| | Sbjct 92 CGTTAAAGGTCGGGGTGTTGGACACCGGTATCACTGAGGAAATGTATCAGGAGCTGGAGC 33 Query 12025 GACTGATTGCGGATGCAAAACCAGCCAGTCGT 12056 | ||||||| || || || || | ||| ||| Sbjct 32 GGCTGATTGATGACGCCAAGCCCGTCAGCCGT 1 >seq3084702 Length=3045 Score = 98.7 bits (108), Expect = 2e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 11733 AACCCTGACACCTGTCCGGAAAATTTGCTGCCGTGGCTGGCGTGGGCGTTTTCTGTCGAC 11792 ||| |||| ||||| |||| ||||||||||| ||||| ||||| | || || || Sbjct 2898 AACGCTGATACCTGCCCGGTGCATTTGCTGCCGCATCTGGCCTGGGCTTGGTCGGTGGAT 2839 Query 11793 CGGTGGGATGAGAACTGGCCGGAGGGAACAAAACGTGCCGTTATCCGTGATGCATATTTC 11852 || |||||| | ||| | |||| || || ||||||| ||| | | |||| | Sbjct 2838 CGCTGGGATTACCGATGGACAGAGGCGACCAAGCGTGCCGCCATCAAGGCCTCTTATTAC 2779 Query 11853 ATTCACTGCCACAAGGGGACTATCGGCGCAATCCGTCGGGTAGTGGAGCCTCTCGGCTA 11911 || || ||||||||| ||||||||||| | ||||| || || |||||||| ||||| Sbjct 2778 ATCCATGCCCACAAGGGAACTATCGGCGCCTTGCGTCGTGTGGTTGAGCCTCTGGGCTA 2720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94322514136036