Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq1495313 93.3 3e-14
seq2585192 91.5 1e-13
seq116363 87.8 1e-12
seq2264939 84.2 1e-11
>seq1495313
Length=124
Score = 93.3 bits (102), Expect = 3e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 25426 GCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCG 25485
|||| || | ||||| |||||| ||||| || |||||||||||||| ||||| || || |
Sbjct 124 GCGGCTCGATGTGATTCAGGTAAACGTGTGCATCTCCCAGAGTGTGTACAAAGTCACCTG 65
Query 25486 GTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAA 25545
| | || | || | || || |||||||| ||||| || |||||||||||||| |
Sbjct 64 GCTTCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGA 5
Query 25546 AGGG 25549
||||
Sbjct 4 AGGG 1
>seq2585192
Length=178
Score = 91.5 bits (100), Expect = 1e-13
Identities = 111/150 (74%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565
|| |||||||| ||||| || |||||||||||||| ||||| || || | ||||||
Sbjct 20 GCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATG 79
Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625
| | ||||||| |||||| | ||| || || ||||| | | |||||| ||||| ||
Sbjct 80 T-CTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCA 138
Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655
| || || |||||| || || || || ||
Sbjct 139 GAGGGCGTGGCACGGGGGGAGGGCCATGAG 168
>seq116363
Length=44347
Score = 87.8 bits (96), Expect = 1e-12
Identities = 110/150 (73%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565
|| |||||||| ||||| || |||||||||||||| ||||| || || | ||||||
Sbjct 21694 GCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATG 21635
Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625
| | |||| || |||||| | ||| || || ||||| | | |||||| ||||| ||
Sbjct 21634 T-CTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCTCCACGTAGAACTGGCA 21576
Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655
| || || |||||| || || || || ||
Sbjct 21575 GAGGGCGTGGCACGGGGGGAGGGCCATGAG 21546
>seq2264939
Length=133
Score = 84.2 bits (92), Expect = 1e-11
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446
|||| || || || || || | || |||||||| |||||||| || | ||||| |||||
Sbjct 91 TGGGGAAAGGCCTTGGTTCTCACTGAAGCTGAGTTTTCAGCGGCTCGATGTGATTCAGGT 32
Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAA 25477
| ||||| || |||||||||||||| |||||
Sbjct 31 AAACGTGTGCATCTCCCAGAGTGTGTACAAA 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 327334403110803
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |