Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1495313 93.3 3e-14 seq2585192 91.5 1e-13 seq116363 87.8 1e-12 seq2264939 84.2 1e-11 >seq1495313 Length=124 Score = 93.3 bits (102), Expect = 3e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 25426 GCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCG 25485 |||| || | ||||| |||||| ||||| || |||||||||||||| ||||| || || | Sbjct 124 GCGGCTCGATGTGATTCAGGTAAACGTGTGCATCTCCCAGAGTGTGTACAAAGTCACCTG 65 Query 25486 GTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAA 25545 | | || | || | || || |||||||| ||||| || |||||||||||||| | Sbjct 64 GCTTCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGA 5 Query 25546 AGGG 25549 |||| Sbjct 4 AGGG 1 >seq2585192 Length=178 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || |||||||||||||| ||||| || || | |||||| Sbjct 20 GCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATG 79 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | ||||||| |||||| | ||| || || ||||| | | |||||| ||||| || Sbjct 80 T-CTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCA 138 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || || |||||| || || || || || Sbjct 139 GAGGGCGTGGCACGGGGGGAGGGCCATGAG 168 >seq116363 Length=44347 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || |||||||||||||| ||||| || || | |||||| Sbjct 21694 GCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATG 21635 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | |||| || |||||| | ||| || || ||||| | | |||||| ||||| || Sbjct 21634 T-CTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCTCCACGTAGAACTGGCA 21576 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || || |||||| || || || || || Sbjct 21575 GAGGGCGTGGCACGGGGGGAGGGCCATGAG 21546 >seq2264939 Length=133 Score = 84.2 bits (92), Expect = 1e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 |||| || || || || || | || |||||||| |||||||| || | ||||| ||||| Sbjct 91 TGGGGAAAGGCCTTGGTTCTCACTGAAGCTGAGTTTTCAGCGGCTCGATGTGATTCAGGT 32 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAA 25477 | ||||| || |||||||||||||| ||||| Sbjct 31 AAACGTGTGCATCTCCCAGAGTGTGTACAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327334403110803