Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_005857.1
Length=51601
Score E
Sequences producing significant alignments: (Bits) Value
seq3088057 95.1 4e-15
seq3088379 87.8 6e-13
>seq3088057
Length=7030
Score = 95.1 bits (104), Expect = 4e-15
Identities = 150/212 (71%), Gaps = 10/212 (5%)
Strand=Plus/Plus
Query 16253 TGGACGCTGTACCAGATCGCACAATACTGCGATCAGATGGTCCCCGATGGTAAGGGAGGC 16312
||| |||| || | ||||| |||||||||||||||||||| || ||||| || ||||
Sbjct 5732 TGGTCGCTTTATCGCATCGCGCAATACTGCGATCAGATGGTGCCGGATGGAAA---AGGC 5788
Query 16313 GATGGCATGGAGCCTCGCTATCTCTGTAACGTCTACGTGCAGGAACGCA--ACGATGCGT 16370
||||||||||| |||| | ||| ||| | ||| |||| || ||| ||| || |
Sbjct 5789 ---GGCATGGAGCCGCGCTTTACCTGCAACCTGTACCTGCA--AAAGCAGGCCGAGGCCT 5843
Query 16371 ACACCGTGCTGCGCGATTTTGCCGCCATTTTCCGGGGGATGACCTGCTGGAGCGGTGAGC 16430
|| | ||||||| ||| | || | || || | || || ||| |||| ||| |
Sbjct 5844 ACGCGGTGCTGCAGGATCTGGCATCGATCTTTCACGGTCTGGCCTACTGGGACGGCAGCC 5903
Query 16431 AGATTGTCGTACAGGCTGATATGCCGCGTGAT 16462
|||| || || | || ||||||||| | |||
Sbjct 5904 AGATCGTGGTCAACGCCGATATGCCGGGCGAT 5935
>seq3088379
Length=10556
Score = 87.8 bits (96), Expect = 6e-13
Identities = 180/263 (68%), Gaps = 6/263 (2%)
Strand=Plus/Plus
Query 1891 ATCGACCCTGCTGGCGCAACAGCGCTTCGCCACCAGTTGGAGGATTACGGTTTTA--CCG 1948
|| |||||| ||||||||||| || | || | | || || | ||||| | |||
Sbjct 1780 ATTGACCCTCATGGCGCAACAGGCCTGAGTCATGACCTTGATGACCAGGGTTTCAATCCG 1839
Query 1949 TAGTCGATATCCGGCAGGACTATACCAACATGTCACCGGCAATGAAGGAGCTGGAAGCGG 2008
||| ||| |||| |||| ||||||||||| | ||||| |||||||| || |
Sbjct 1840 --GTCACCATCACGCAGAACTACACCAACATGTCGGATCCGATGAAAGAGCTGGAGGCCG 1897
Query 2009 CTCTTGCCGGTGGACGATTCCACCATGATGGCAATCCCATTCTTACCTGGTGTATCAGTA 2068
| | | | ||| || ||||| ||||| ||||| || || | |||||||| || | |
Sbjct 1898 CGATAGAGGCTGGCCGTTTCCATCATGACGGCAACCCGATCATGACCTGGTGCGTCGGCA 1957
Query 2069 ACGTTATCGGGAAATTCATCCCTGGTAGCGACGATCTCGTTCGCCCTA-CAAAGGGAGAC 2127
|||| ||||| || | | || |||| ||| || |||| ||||| | |||| | | |
Sbjct 1958 ACGTGATCGGCAAGAACTTGCCCGGTAACGATGACATCGTGCGCCCGATCAAACAG-GGC 2016
Query 2128 AATCAAAGCAAAATCGATGGGGC 2150
|| | | ||| ||||| || ||
Sbjct 2017 GATGACAACAAGATCGACGGCGC 2039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 158949990077666
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |