Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq3088057 95.1 4e-15 seq3088379 87.8 6e-13 >seq3088057 Length=7030 Score = 95.1 bits (104), Expect = 4e-15 Identities = 150/212 (71%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 16253 TGGACGCTGTACCAGATCGCACAATACTGCGATCAGATGGTCCCCGATGGTAAGGGAGGC 16312 ||| |||| || | ||||| |||||||||||||||||||| || ||||| || |||| Sbjct 5732 TGGTCGCTTTATCGCATCGCGCAATACTGCGATCAGATGGTGCCGGATGGAAA---AGGC 5788 Query 16313 GATGGCATGGAGCCTCGCTATCTCTGTAACGTCTACGTGCAGGAACGCA--ACGATGCGT 16370 ||||||||||| |||| | ||| ||| | ||| |||| || ||| ||| || | Sbjct 5789 ---GGCATGGAGCCGCGCTTTACCTGCAACCTGTACCTGCA--AAAGCAGGCCGAGGCCT 5843 Query 16371 ACACCGTGCTGCGCGATTTTGCCGCCATTTTCCGGGGGATGACCTGCTGGAGCGGTGAGC 16430 || | ||||||| ||| | || | || || | || || ||| |||| ||| | Sbjct 5844 ACGCGGTGCTGCAGGATCTGGCATCGATCTTTCACGGTCTGGCCTACTGGGACGGCAGCC 5903 Query 16431 AGATTGTCGTACAGGCTGATATGCCGCGTGAT 16462 |||| || || | || ||||||||| | ||| Sbjct 5904 AGATCGTGGTCAACGCCGATATGCCGGGCGAT 5935 >seq3088379 Length=10556 Score = 87.8 bits (96), Expect = 6e-13 Identities = 180/263 (68%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 1891 ATCGACCCTGCTGGCGCAACAGCGCTTCGCCACCAGTTGGAGGATTACGGTTTTA--CCG 1948 || |||||| ||||||||||| || | || | | || || | ||||| | ||| Sbjct 1780 ATTGACCCTCATGGCGCAACAGGCCTGAGTCATGACCTTGATGACCAGGGTTTCAATCCG 1839 Query 1949 TAGTCGATATCCGGCAGGACTATACCAACATGTCACCGGCAATGAAGGAGCTGGAAGCGG 2008 ||| ||| |||| |||| ||||||||||| | ||||| |||||||| || | Sbjct 1840 --GTCACCATCACGCAGAACTACACCAACATGTCGGATCCGATGAAAGAGCTGGAGGCCG 1897 Query 2009 CTCTTGCCGGTGGACGATTCCACCATGATGGCAATCCCATTCTTACCTGGTGTATCAGTA 2068 | | | | ||| || ||||| ||||| ||||| || || | |||||||| || | | Sbjct 1898 CGATAGAGGCTGGCCGTTTCCATCATGACGGCAACCCGATCATGACCTGGTGCGTCGGCA 1957 Query 2069 ACGTTATCGGGAAATTCATCCCTGGTAGCGACGATCTCGTTCGCCCTA-CAAAGGGAGAC 2127 |||| ||||| || | | || |||| ||| || |||| ||||| | |||| | | | Sbjct 1958 ACGTGATCGGCAAGAACTTGCCCGGTAACGATGACATCGTGCGCCCGATCAAACAG-GGC 2016 Query 2128 AATCAAAGCAAAATCGATGGGGC 2150 || | | ||| ||||| || || Sbjct 2017 GATGACAACAAGATCGACGGCGC 2039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158949990077666