Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq35099 86.0 3e-12 seq338450 84.2 1e-11 seq343629 82.4 4e-11 seq320552 82.4 4e-11 seq285737 82.4 4e-11 seq198618 82.4 4e-11 seq56076 82.4 4e-11 seq7313 82.4 4e-11 >seq35099 Length=28473 Score = 86.0 bits (94), Expect = 3e-12 Identities = 60/68 (88%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 14205 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 14264 Query 11528 CC-GTCGA 11534 || ||||| Sbjct 14265 CCAGTCGA 14272 >seq338450 Length=2752 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 2116 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 2057 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 2056 CTGAGCTAACCGGCC 2042 >seq343629 Length=7557 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 6192 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 6251 Query 11528 CC 11529 || Sbjct 6252 CC 6253 >seq320552 Length=16403 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 8822 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 8763 Query 11528 CC 11529 || Sbjct 8762 CC 8761 >seq285737 Length=776 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 775 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 716 Query 11528 CC 11529 || Sbjct 715 CC 714 >seq198618 Length=28570 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 ||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 18105 GGATCGAACCTGAGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 18046 Query 11528 CC 11529 || Sbjct 18045 CC 18044 >seq56076 Length=18430 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 10040 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 9981 Query 11528 CC 11529 || Sbjct 9980 CC 9979 >seq7313 Length=16021 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 12203 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 12262 Query 11528 CC 11529 || Sbjct 12263 CC 12264 Lambda K H 0.640 0.410 0.922 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 251648350169836