Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq35099 86.0 3e-12
seq338450 84.2 1e-11
seq343629 82.4 4e-11
seq320552 82.4 4e-11
seq285737 82.4 4e-11
seq198618 82.4 4e-11
seq56076 82.4 4e-11
seq7313 82.4 4e-11
>seq35099
Length=28473
Score = 86.0 bits (94), Expect = 3e-12
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 14205 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 14264
Query 11528 CC-GTCGA 11534
|| |||||
Sbjct 14265 CCAGTCGA 14272
>seq338450
Length=2752
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 2116 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 2057
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 2056 CTGAGCTAACCGGCC 2042
>seq343629
Length=7557
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 6192 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 6251
Query 11528 CC 11529
||
Sbjct 6252 CC 6253
>seq320552
Length=16403
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 8822 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 8763
Query 11528 CC 11529
||
Sbjct 8762 CC 8761
>seq285737
Length=776
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 775 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 716
Query 11528 CC 11529
||
Sbjct 715 CC 714
>seq198618
Length=28570
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 18105 GGATCGAACCTGAGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 18046
Query 11528 CC 11529
||
Sbjct 18045 CC 18044
>seq56076
Length=18430
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 10040 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 9981
Query 11528 CC 11529
||
Sbjct 9980 CC 9979
>seq7313
Length=16021
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 12203 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 12262
Query 11528 CC 11529
||
Sbjct 12263 CC 12264
Lambda K H
0.640 0.410 0.922
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 251648350169836
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |