Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_006146.1
Length=171096
Score E
Sequences producing significant alignments: (Bits) Value
seq14698 140 3e-28
>seq14698
Length=29873
Score = 140 bits (154), Expect = 3e-28
Identities = 116/142 (82%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| |||||||| || || ||| |||| |||||||||||||||||||||||||| || |
Sbjct 14200 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 14141
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
||||||||||||| || || | || | ||| |||||||||||||| ||||| ||||
Sbjct 14140 TGCCACAGGCTGAGAACCATGGGCCTGAGATCAAGGAGCACGTGAACTCACTGGGGGAGA 14081
Query 10260 ATCTAAAGACCCTAAGGCTTCG 10281
| || |||||||| |||| ||
Sbjct 14080 AGCTGAAGACCCTCCGGCTGCG 14059
Score = 113 bits (124), Expect = 5e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| | || | | || || ||| |||| ||| ||||||| |||||||||||||| || |
Sbjct 18862 AGGGTTTCCAGAGTTGCCAAGCCTTGTCGGAAGTGATCCACTTTTACCTGGAGGAGGTGA 18921
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
||||||||||||| || | | || | ||| |||||||||||||| ||||| ||||
Sbjct 18922 TGCCACAGGCTGAGAACTATGGGCCTGAGATCAAGGAGCACGTGAACTCGCTGGGGGAGA 18981
Query 10260 ATCTAAAGACCCTAAGGCTTCG 10281
| || |||||||| |||| ||
Sbjct 18982 AGCTGAAGACCCTCCGGCTGCG 19003
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418
|||| || || | || |||||||||||||||||||| |||||||| || || ||||| |
Sbjct 11881 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 11822
Query 10419 TAGAAGCATACATGACCATGAAAAT 10443
||||| | |||||||| ||||| ||
Sbjct 11821 TAGAAACCTACATGACAATGAAGAT 11797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 526246866495360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |