Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq14698 140 3e-28 >seq14698 Length=29873 Score = 140 bits (154), Expect = 3e-28 Identities = 116/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| |||||||||||||||||||||||||| || | Sbjct 14200 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 14141 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 ||||||||||||| || || | || | ||| |||||||||||||| ||||| |||| Sbjct 14140 TGCCACAGGCTGAGAACCATGGGCCTGAGATCAAGGAGCACGTGAACTCACTGGGGGAGA 14081 Query 10260 ATCTAAAGACCCTAAGGCTTCG 10281 | || |||||||| |||| || Sbjct 14080 AGCTGAAGACCCTCCGGCTGCG 14059 Score = 113 bits (124), Expect = 5e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| | || | | || || ||| |||| ||| ||||||| |||||||||||||| || | Sbjct 18862 AGGGTTTCCAGAGTTGCCAAGCCTTGTCGGAAGTGATCCACTTTTACCTGGAGGAGGTGA 18921 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 ||||||||||||| || | | || | ||| |||||||||||||| ||||| |||| Sbjct 18922 TGCCACAGGCTGAGAACTATGGGCCTGAGATCAAGGAGCACGTGAACTCGCTGGGGGAGA 18981 Query 10260 ATCTAAAGACCCTAAGGCTTCG 10281 | || |||||||| |||| || Sbjct 18982 AGCTGAAGACCCTCCGGCTGCG 19003 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || | || |||||||||||||||||||| |||||||| || || ||||| | Sbjct 11881 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 11822 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||| | |||||||| ||||| || Sbjct 11821 TAGAAACCTACATGACAATGAAGAT 11797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526246866495360