Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq324775 170 3e-37 seq185621 114 2e-20 >seq324775 Length=12802 Score = 170 bits (188), Expect = 3e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || || | |||||||||||| ||| |||| || ||||| |||||| Sbjct 7367 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 7308 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| ||||| || || || |||||||| |||||||||||||| ||||| Sbjct 7307 CTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 7248 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | || | ||| || || | || || |||||||| | Sbjct 7247 ACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAACATGAGGTGGGTAGATCATTTCG 7188 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || | ||| |||| Sbjct 7187 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 7139 Score = 150 bits (166), Expect = 2e-31 Identities = 218/305 (71%), Gaps = 2/305 (1%) Strand=Plus/Minus Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732 |||| | ||| | || || ||||| ||||| ||||| | |||| |||||||| || | Sbjct 9047 GAACACTGAATGAGGTAAAAGGACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTG 8988 Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792 ||| | |||| ||| ||| || || ||||| || || ||||| || |||||||| Sbjct 8987 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACT 8928 Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCT-CG 8851 | || || || || || |||| || ||||| ||||| || || || || |||| | Sbjct 8927 CGGGAGAACATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGCGCTCC-AGCTTCT 8869 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | ||| |||| || |||||||||| ||||| ||||| || |||| | ||| ||| Sbjct 8868 ACCATGGTCTCCCCAAAGATGGCGTCTGGACGAGGCTTCTCTACCAGAAGGGCGGGATAC 8809 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971 | ||||| || || ||||||||||| || || | || ||||| |||||||| ||| Sbjct 8808 AGCTCCATGGCATCTATGTCTCCGTAGAGTGCTTCTAACTCTGCAGCCATTTCCTTCTCT 8749 Query 8972 CCTGT 8976 ||||| Sbjct 8748 CCTGT 8744 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| | ||| |||||||| || || ||||| | ||||| ||| | || Sbjct 6349 TCTTACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 6290 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | || ||||| |||||||| Sbjct 6289 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATC 6230 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 ||| |||| | || | ||||| ||||| |||||| Sbjct 6229 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAAC 6191 >seq185621 Length=19746 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || || || ||||| | |||||||| | || || |||||| |||| Sbjct 7667 AAGCCCACCTCACCACCAAATGTGCTTGCCTTCCAGTACTCTGGAGAACAGATGGGGTTC 7726 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | ||||| || |||||||| |||||||| | || | |||||||| || |||||| Sbjct 7727 CCTAATAGGCCCTTAAGGGAAAAAGGAGCCCCAATTTCTATCATGCTCTCCCCAAAGATG 7786 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | | | ||| || ||| || | | | || | ||| || |||| ||| ||||||||| Sbjct 7787 GAGCTCGGATGGCACTTCTCAAGAAGCAGCCCTGGGTAGAATTCCAAAGCATCGATGTCT 7846 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||||| || || | ||| || || || ||||| || |||| Sbjct 7847 CCGTATAGCTCCTCCAATTCAGCTGCCATCTCCTTCTCACCTG 7889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 681171217017840