Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq2954467 96.9 3e-15 seq367654 96.9 3e-15 >seq2954467 Length=459 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 11/230 (5%) Strand=Plus/Minus Query 94191 CGCGCCGCACGGTCAGCGTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCTCCA 94250 ||||| |||||||| || ||||| |||| |||||| || || |||||| | || Sbjct 344 CGCGCTCCACGGTCATGGTGGTGTTGAGCATCAGCACGCCCTGGTCGGCCCAGCTTTGCA 285 Query 94251 GGCAGCCGTGGGCGGGCGCGGGCAGCGTCGG-GTAC--GTCGCCCG-GACCGCCGCGAAG 94306 ||||||||||| ||| | |||| || | ||||| | || | | || Sbjct 284 GGCAGCCGTGGTTGGG-------AATGTCGATGTTCAGGTCGCGCTTGAGCTCTTTATAG 232 Query 94307 ATGTTGGCCAGGCTCGGGGGGATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGG 94366 || ||| |||| ||| || ||||||| || | | || |||| ||| || ||| Sbjct 231 ATATTGACCAGCGACGGCGGCGTCGGCACGCCCGGTTGTACCGAGAAGCACAGGCCATGG 172 Query 94367 GCCTGGCCCGGCCCGTGGTACGGGTCCTGGCCGATGATGACCACCTTGAC 94416 |||||||| || |||||||| ||||||||||||| ||| ||||||||||| Sbjct 171 GCCTGGCCGGGGCCGTGGTATGGGTCCTGGCCGAGGATCACCACCTTGAC 122 >seq367654 Length=1000 Score = 96.9 bits (106), Expect = 3e-15 Identities = 168/243 (69%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 94191 CGCGCCGCACGGTCAGCGTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCTCCA 94250 ||||| |||||||| |||||||| |||| |||||| || || |||||| | || Sbjct 344 CGCGCTCCACGGTCATGGTCGTGTTGAGCATCAGCACGCCCTGGTCAGCCCAGCTTTGCA 285 Query 94251 GGCAGCCGTGGGCGGGCGCGGGCAGCGTCGGGT-ACGTCGCCCGGACCGCCGCGAAGATG 94309 ||||||||||| ||| | | || ||| ||| | || | | |||| Sbjct 284 GGCAGCCGTGGTTGGGGATGTCGATGTTCAGGTCACG----CTTGAGTTCTTTGTAGATA 229 Query 94310 TTGGCCAGGCTCGGGGGGATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGGGCC 94369 ||| |||| ||| || ||||||| || | | || |||| || || |||||| Sbjct 228 TTGACCAGCGACGGTGGCGTCGGCACGCCCGGTTGTACCGAGAAGCACAAGCCATGGGCC 169 Query 94370 TGGCCCGGCCCGTGGTACGGGTCCTGGCCGATGATGACCACCTTGACGTCCTCGGGCGCC 94429 ||||| || |||||||||||||| ||||||| ||| ||||||||||| | || ||| | Sbjct 168 TGGCCGGGGCCGTGGTACGGGTCTTGGCCGAGGATCACCACCTTGACCTTGTCCAGCGGC 109 Query 94430 GTG 94432 ||| Sbjct 108 GTG 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441228906554760