Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq300236 104 2e-17
seq136426 84.2 2e-11
>seq300236
Length=7644
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || | |||| ||||| ||| || || || || | ||| || ||
Sbjct 7640 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 7581
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||| ||||||||||| || ||||||| || || ||||| ||||||||
Sbjct 7580 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGG 7521
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || ||||| || | || || ||||||| | | |||||| | | || ||
Sbjct 7520 ATGCCCTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 7461
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | ||||||||||| ||||| || || || ||||||||||||||
Sbjct 7460 TCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 7414
>seq136426
Length=23094
Score = 84.2 bits (92), Expect = 2e-11
Identities = 165/244 (68%), Gaps = 9/244 (4%)
Strand=Plus/Minus
Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829
|| || | || ||||| ||||| |||| |||||||||| ||| || || || || | ||
Sbjct 21312 AACTTAAAACACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGT 21253
Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889
| || || || |||| ||| ||||||||||| || ||||||| || || ||||
Sbjct 21252 TGTAGTCAGACAGGGTGTGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCT 21193
Query 94890 GATCTG---GAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946
| || | | || | || |||| | || || |||||| | ||| |||
Sbjct 21192 GGTCCGGGTGGGGGGTGCCCTCTTGG------ATCTTGGCCTTGGCATTCTCGATGATGT 21139
Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006
|| | | || || || | |||||||| || ||||| | || |||| ||||||||||
Sbjct 21138 CACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCATGAAGATCTGCA 21079
Query 95007 TGCT 95010
| ||
Sbjct 21078 TCCT 21075
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 431420048362532
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |