Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq91939 178 2e-40 seq122542 172 8e-39 seq76976 167 4e-37 seq287735 165 1e-36 seq388941 158 2e-34 seq170981 152 8e-33 seq2802187 143 4e-30 seq49630 132 7e-27 seq358160 129 9e-26 seq140002 127 3e-25 seq388719 105 1e-18 seq322117 87.8 3e-13 >seq91939 Length=48637 Score = 178 bits (196), Expect = 2e-40 Identities = 198/262 (76%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| | |||| || || || || || || || || |||||||||| Sbjct 10464 CGCCAAGCGCCATCGCAAAG-TCTTGCGGGACAATATTCAGGGTATTACTAAGCCAGCTA 10406 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||| |||||||| ||||| ||| ||||||| | |||| ||||||| Sbjct 10405 TCCGGCGTCTTGCTCGGCGTGGTGGGGTCAAACGTATCTCTGGTCTTATCTACGAAGAGA 10346 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||||| || |||| | || || | | || |||| || || || |||||| | Sbjct 10345 CTCGTGGGGTGCTGAAAGTGTTTCTGGAAAATGTGATCCGGGACGCGGTCACCTATACGG 10286 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||| ||| |||||||| ||||||| || | |||||||| | Sbjct 10285 AGCACGCCAAGCGCAAGACTGTTACCGCCATGGATGTCGTCTACGCGCTCAAACGTCAGG 10226 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||||| |||| || ||||| Sbjct 10225 GCCGTACTCTTTACGGATTTGG 10204 >seq122542 Length=11871 Score = 172 bits (190), Expect = 8e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| ||||||||||| || || |||||||| || || Sbjct 7887 CGCTAAGCGTCACCGCAAGGTTCTTCGCGATAACATCCAGGGCATTACCAAGCCTGCCAT 7946 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| || ||||| ||||| ||||| | ||||| | |||| || |||| Sbjct 7947 CCGTCGTCTGGCCCGGCGTGGAGGAGTTAAGCGCATTTCTGGCCTCATCTACGAGGAGAC 8006 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| | ||||| | | ||| |||| ||||| || || ||||| Sbjct 8007 CCGCGGGGTGTTGAAGGTGTTCCTGGAAAACGTGATCCGCGATGCGGTCACTTACACCGA 8066 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || || ||||||||| | ||||| | ||||| || ||||||| || || Sbjct 8067 GCATGCCAAGCGCAAAACTGTCACCGCTATGGACGTGGTCTACGCGCTGAAACGCCAGGG 8126 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || ||||| ||||| Sbjct 8127 CCGCACCCTCTACGGCTTTGGCGGTTAA 8154 >seq76976 Length=21106 Score = 167 bits (184), Expect = 4e-37 Identities = 200/272 (74%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | ||| || || |||||||| || ||||| ||||| ||||| Sbjct 13873 CGCTAAGCGCCACCGTAAGGTTCTGCGCGACAACATCCAGGGCATCACTAAGCCTGCTAT 13814 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||||||||| || || ||||| ||||||| | |||| ||||||| Sbjct 13813 CCGCCGCCTGGCTCGTCGTGGCGGTGTGAAGCGCATCTCTGGGCTCATCTACGAAGAGAC 13754 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | || || ||| ||| |||| ||||| || ||| ||||| Sbjct 13753 CCGCGGCGTCCTTAAGGTGTTTCTGGAGAACGTGATCCGGGATGCGGTCACCTACACCGA 13694 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || |||||||||||| | |||||| | ||||| || | || || || || Sbjct 13693 GCATGCCAAGCGGAAGACTGTCACCGCTATGGATGTGGTCTACGCGCTCAAGCGCCAGGG 13634 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 ||| | | || |||||||| ||||| ||| Sbjct 13633 CCGCACCCTCTACGGTTTTGGTGGTTAAGCTT 13602 Score = 159 bits (176), Expect = 5e-35 Identities = 192/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| ||| || || || ||||| || ||||||||||| || || Sbjct 9898 CGCTAAGCGCCACCGCAAGGTTCTGCGGGACAATATCCAGGGTATCACCAAGCCCGCCAT 9957 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||||||||||||||| || ||||| |||| || | |||| || |||| Sbjct 9958 CCGTCGCCTGGCTCGTCGTGGTGGTGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 10017 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||| | ||| || |||| ||||| || ||| || || Sbjct 10018 CCGCGGGGTCCTGAAGGTGTTCTTGGAGAATGTGATCCGGGATGCGGTCACCTACACGGA 10077 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||| ||| |||||||| | ||||| || | || || || || Sbjct 10078 GCACGCCAAGCGCAAGACTGTTACCGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGG 10137 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | ||||| || || Sbjct 10138 CCGCACGCTCTATGGCTTCGG 10158 >seq287735 Length=12290 Score = 165 bits (182), Expect = 1e-36 Identities = 202/276 (73%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| ||| || || |||||||| || || |||||||| || || Sbjct 6834 CGCCAAGCGTCACCGCAAGGTTCTGCGCGACAACATCCAGGGCATTACCAAGCCCGCCAT 6893 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||||||||||| || || ||| | || || | |||||||||||| Sbjct 6894 TCGTCGTCTGGCTCGTCGTGGTGGCGTAAAACGTATTTCCGGTCTCATCTATGAAGAGAC 6953 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | || || ||| ||| || | || || || ||| || || Sbjct 6954 CCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATACGGGACGCGGTCACCTACACGGA 7013 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| || || ||||||||| |||||||| | ||||| || | || || || || Sbjct 7014 GCACGCTAAGCGCAAAACTGTCACCGCCATGGATGTGGTCTACGCGCTTAAGCGCCAGGG 7073 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707 |||| |||| || || || ||||| | |||| Sbjct 7074 ACGTACCCTTTACGGCTTCGGCGGTTAAATTACTAA 7109 >seq388941 Length=4931 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | | ||| || ||||| ||||| || ||||| ||||| || || Sbjct 1081 GCTAAGCGCCATCGTAAAGTTCTCCGGGATAATATCCAGGGCATCACTAAGCCTGCCATT 1022 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || |||||||| || ||||| ||||||| | |||| || |||| Sbjct 1021 CGTCGTCTGGCCCGCCGTGGTGGTGTTAAGCGGATCTCTGGGCTTATCTACGAGGAGACC 962 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||| | ||| ||| || | || || || ||| |||||| Sbjct 961 CGCGGGGTGCTGAAGGTGTTCTTGGAGAACGTGATTCGGGACGCGGTCACCTACACCGAG 902 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| |||||||||||| | ||||| | ||||| || | || || || ||| Sbjct 901 CACGCCAAACGCAAGACTGTCACCGCTATGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 842 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||||| || || Sbjct 841 CGCACCCTTTATGGCTTCGG 822 >seq170981 Length=14032 Score = 152 bits (168), Expect = 8e-33 Identities = 198/274 (72%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | ||| |||||||||||||||| ||||||||||| || || Sbjct 9469 CGCCAAGCGTCATCGCAAAGTTCTGAGAGATAACATCCAAGGCATCACCAAGCCCGCCAT 9410 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || || ||||| ||||| |||||||| ||| | || || | |||| || |||| Sbjct 9409 TCGGCGCCTTGCTCGGCGTGGAGGAGTCAAACGTATTTCCGGCCTCATCTACGAGGAGAC 9350 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| | || || ||| ||||| | || ||| || ||| || || Sbjct 9349 CCGAGGCGTGTTGAAGGTGTTTCTGGAGAATGTTATTCGGGACGCTGTCACCTACACGGA 9290 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 9289 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTAAAGCGGCAGGG 9230 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 || | | || || || ||| ||| | || || Sbjct 9229 ACGCACCCTGTACGGCTTCGGAGGTTGAACTGCT 9196 >seq2802187 Length=236 Score = 143 bits (158), Expect = 4e-30 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 16466 ATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT 16525 ||||| || ||||||||||| || || || || ||||||||||| ||||| || ||||| Sbjct 1 ATCCAGGGCATCACCAAGCCTGCCATTCGCCGCCTGGCTCGTCGCGGTGGTGTGAAGCGC 60 Query 16526 GTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTT 16585 ||||||| | ||||||| |||| || | || ||||| | ||||| ||| ||| Sbjct 61 ATCTCTGGGCTCATCTATGAGGAGACCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTG 120 Query 16586 ATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGAT 16645 |||| || || || ||| || |||||||| ||||| |||||||||||| ||||||| Sbjct 121 ATCCGCGACGCGGTCACCTACACGGAGCACGCCAAACGCAAGACTGTCACCGCCATGGAC 180 Query 16646 ATCGTCTATGCATTGAAACGTCAAGGCCG 16674 | ||||| || | || || || ||||| Sbjct 181 GTGGTCTACGCGCTCAAGCGCCAGGGCCG 209 >seq49630 Length=15172 Score = 132 bits (146), Expect = 7e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| || || || | ||| || || ||||||||||| ||||| || || || || Sbjct 12030 CGCTAAACGCCACCGTAAGGTTCTGCGGGACAACATCCAAGGTATCACTAAACCGGCCAT 12089 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 12090 TCGCCGCTTGGCCCGCCGTGGAGGAGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 12149 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| | ||||| ||| || |||| || || || ||| ||||| Sbjct 12150 CCGTGGGGTGCTGAAGGTGTTCCTGGAGAATGTGATCCGGGACGCGGTCACCTACACCGA 12209 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||||||||| ||||||| | ||||| || | || || ||||| Sbjct 12210 GCACGCCAAGCGCAAGACTGTCACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAAGG 12269 Query 16672 CCG 16674 || Sbjct 12270 ACG 12272 >seq358160 Length=7670 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||| || ||||| || ||||| || || ||||| || || Sbjct 4894 CGCGAAGCGTCACCGGAAGGTTCTGCGGGATAATATTCAAGGTATTACTAAGCCTGCGAT 4835 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||||||||||| |||||||| |||| || | | ||||| || | Sbjct 4834 CCGCCGTTTGGCTCGTCGTGGTGGGGTCAAGCGCATCTCAGGCCTCATTTATGAGGAAAC 4775 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||| | | | ||| || | || || | ||| ||||| Sbjct 4774 TCGCGGGGTGTTGAAAGTGTTCTTGGAAAACGTGATTCGGGACGCAGTTACCTACACCGA 4715 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || || ||||| ||||| ||||||| ||||||| || |||| ||||| || Sbjct 4714 ACATGCCAAGCGAAAGACGGTCACTGCCATGGACGTCGTCTACGCCCTGAAGCGTCAGGG 4655 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | |||| || || || Sbjct 4654 ACGCACTCTTTACGGATTCGG 4634 >seq140002 Length=1114 Score = 127 bits (140), Expect = 3e-25 Identities = 157/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | | | |||| ||||||| || ||||| ||||| ||||| Sbjct 734 CGCTAAGCGTCACCGCAAAGTTTTGCGAGGCAACATCCTGGGCATCACTAAGCCCGCTAT 793 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||||||| |||| ||||||||||| |||| || | |||| || |||| Sbjct 794 TCGCCGCCTGGCTCGGCGTG--GGAGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 851 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| | |||| ||||| || | | ||||| Sbjct 852 CCGCGGGGTGCTGAAGGTGTTCCTGGAGA--ATGATCCGGGATGCAGTCACCGACACCGA 909 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| || || || ||||||||| ||||||| Sbjct 910 GCACGCCAAGCGCAAAACTGTCACCGCCATGGA 942 >seq388719 Length=5423 Score = 105 bits (116), Expect = 1e-18 Identities = 192/288 (67%), Gaps = 20/288 (7%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | | || || || ||||| || ||||| ||||| || || Sbjct 2058 CGCTAAGCGTCACCGCAAGGTTTTGCGCGACAATATCCAGGGCATCACAAAGCCGGCCAT 1999 Query 16492 CCGTCGTCTGGCTCGTCGTGG--------------------TGGAGTCAAGCGTGTCTCT 16531 ||| || ||||| || ||||| |||||| |||| Sbjct 1998 CCGCCGCCTGGCCCGCCGTGGANNNNNNNNNNNNNNNNNNNNNNNNNCAAGCGCATCTCC 1939 Query 16532 GGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCAT 16591 || | |||| || |||| || | || ||||| | ||||| ||| ||| |||| Sbjct 1938 GGGCTCATCTACGAGGAGACCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGG 1879 Query 16592 GATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTC 16651 || || || ||| ||||||||||| || || |||||||||||| ||||||| | ||| Sbjct 1878 GACGCGGTCACCTACACCGAGCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTC 1819 Query 16652 TATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || || | || ||||| ||||| | | ||||| ||||| ||||| Sbjct 1818 TACGCGCTCAAGCGTCAGGGCCGCACTCTCTATGGATTTGGTGGTTAA 1771 >seq322117 Length=3667 Score = 87.8 bits (96), Expect = 3e-13 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | ||||| ||||||||||| || ||||||||||| || || Sbjct 97 CGCCAAGCGCCACCGCAAAGTCCTTCGTGATAACATCCAGGGCATCACCAAGCCTGCCAT 38 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCG 16524 || || ||||||||||| ||||| || ||||| Sbjct 37 TCGCCGCCTGGCTCGTCGCGGTGGTGTGAAGCG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 76251352773123