Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq91939 178 2e-40
seq122542 172 8e-39
seq76976 167 4e-37
seq287735 165 1e-36
seq388941 158 2e-34
seq170981 152 8e-33
seq2802187 143 4e-30
seq49630 132 7e-27
seq358160 129 9e-26
seq140002 127 3e-25
seq388719 105 1e-18
seq322117 87.8 3e-13
>seq91939
Length=48637
Score = 178 bits (196), Expect = 2e-40
Identities = 198/262 (76%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| ||||||| | |||| || || || || || || || || ||||||||||
Sbjct 10464 CGCCAAGCGCCATCGCAAAG-TCTTGCGGGACAATATTCAGGGTATTACTAAGCCAGCTA 10406
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| ||||| ||||| |||||||| ||||| ||| ||||||| | |||| |||||||
Sbjct 10405 TCCGGCGTCTTGCTCGGCGTGGTGGGGTCAAACGTATCTCTGGTCTTATCTACGAAGAGA 10346
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
||||| || |||| | || || | | || |||| || || || |||||| |
Sbjct 10345 CTCGTGGGGTGCTGAAAGTGTTTCTGGAAAATGTGATCCGGGACGCGGTCACCTATACGG 10286
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || |||||||| ||| |||||||| ||||||| || | |||||||| |
Sbjct 10285 AGCACGCCAAGCGCAAGACTGTTACCGCCATGGATGTCGTCTACGCGCTCAAACGTCAGG 10226
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||||| |||| || |||||
Sbjct 10225 GCCGTACTCTTTACGGATTTGG 10204
>seq122542
Length=11871
Score = 172 bits (190), Expect = 8e-39
Identities = 199/268 (74%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||| |||| |||||| ||||||||||| || || |||||||| || ||
Sbjct 7887 CGCTAAGCGTCACCGCAAGGTTCTTCGCGATAACATCCAGGGCATTACCAAGCCTGCCAT 7946
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||||||||| || ||||| ||||| ||||| | ||||| | |||| || ||||
Sbjct 7947 CCGTCGTCTGGCCCGGCGTGGAGGAGTTAAGCGCATTTCTGGCCTCATCTACGAGGAGAC 8006
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || |||||| | ||||| | | ||| |||| ||||| || || |||||
Sbjct 8007 CCGCGGGGTGTTGAAGGTGTTCCTGGAAAACGTGATCCGCGATGCGGTCACTTACACCGA 8066
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||| || || || || ||||||||| | ||||| | ||||| || ||||||| || ||
Sbjct 8067 GCATGCCAAGCGCAAAACTGTCACCGCTATGGACGTGGTCTACGCGCTGAAACGCCAGGG 8126
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||| | | || || ||||| |||||
Sbjct 8127 CCGCACCCTCTACGGCTTTGGCGGTTAA 8154
>seq76976
Length=21106
Score = 167 bits (184), Expect = 4e-37
Identities = 200/272 (74%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| || || | ||| || || |||||||| || ||||| ||||| |||||
Sbjct 13873 CGCTAAGCGCCACCGTAAGGTTCTGCGCGACAACATCCAGGGCATCACTAAGCCTGCTAT 13814
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||||||||| || || ||||| ||||||| | |||| |||||||
Sbjct 13813 CCGCCGCCTGGCTCGTCGTGGCGGTGTGAAGCGCATCTCTGGGCTCATCTACGAAGAGAC 13754
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | || || ||| ||| |||| ||||| || ||| |||||
Sbjct 13753 CCGCGGCGTCCTTAAGGTGTTTCTGGAGAACGTGATCCGGGATGCGGTCACCTACACCGA 13694
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||| || || || |||||||||||| | |||||| | ||||| || | || || || ||
Sbjct 13693 GCATGCCAAGCGGAAGACTGTCACCGCTATGGATGTGGTCTACGCGCTCAAGCGCCAGGG 13634
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703
||| | | || |||||||| ||||| |||
Sbjct 13633 CCGCACCCTCTACGGTTTTGGTGGTTAAGCTT 13602
Score = 159 bits (176), Expect = 5e-35
Identities = 192/261 (74%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| || |||| ||| || || || ||||| || ||||||||||| || ||
Sbjct 9898 CGCTAAGCGCCACCGCAAGGTTCTGCGGGACAATATCCAGGGTATCACCAAGCCCGCCAT 9957
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| ||||||||||||||||| || ||||| |||| || | |||| || ||||
Sbjct 9958 CCGTCGCCTGGCTCGTCGTGGTGGTGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 10017
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| | ||| | ||| || |||| ||||| || ||| || ||
Sbjct 10018 CCGCGGGGTCCTGAAGGTGTTCTTGGAGAATGTGATCCGGGATGCGGTCACCTACACGGA 10077
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || |||||||| ||| |||||||| | ||||| || | || || || ||
Sbjct 10078 GCACGCCAAGCGCAAGACTGTTACCGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGG 10137
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | | ||||| || ||
Sbjct 10138 CCGCACGCTCTATGGCTTCGG 10158
>seq287735
Length=12290
Score = 165 bits (182), Expect = 1e-36
Identities = 202/276 (73%), Gaps = 0/276 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| |||| ||| || || |||||||| || || |||||||| || ||
Sbjct 6834 CGCCAAGCGTCACCGCAAGGTTCTGCGCGACAACATCCAGGGCATTACCAAGCCCGCCAT 6893
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||||||||||||||||||||| || || ||| | || || | ||||||||||||
Sbjct 6894 TCGTCGTCTGGCTCGTCGTGGTGGCGTAAAACGTATTTCCGGTCTCATCTATGAAGAGAC 6953
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| | || || ||| ||| || | || || || ||| || ||
Sbjct 6954 CCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATACGGGACGCGGTCACCTACACGGA 7013
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||||| || || ||||||||| |||||||| | ||||| || | || || || ||
Sbjct 7014 GCACGCTAAGCGCAAAACTGTCACCGCCATGGATGTGGTCTACGCGCTTAAGCGCCAGGG 7073
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707
|||| |||| || || || ||||| | ||||
Sbjct 7074 ACGTACCCTTTACGGCTTCGGCGGTTAAATTACTAA 7109
>seq388941
Length=4931
Score = 158 bits (174), Expect = 2e-34
Identities = 191/260 (73%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| ||||| | | ||| || ||||| ||||| || ||||| ||||| || ||
Sbjct 1081 GCTAAGCGCCATCGTAAAGTTCTCCGGGATAATATCCAGGGCATCACTAAGCCTGCCATT 1022
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||||||||| || |||||||| || ||||| ||||||| | |||| || ||||
Sbjct 1021 CGTCGTCTGGCCCGCCGTGGTGGTGTTAAGCGGATCTCTGGGCTTATCTACGAGGAGACC 962
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | ||| | ||| ||| || | || || || ||| ||||||
Sbjct 961 CGCGGGGTGCTGAAGGTGTTCTTGGAGAACGTGATTCGGGACGCGGTCACCTACACCGAG 902
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| ||||| |||||||||||| | ||||| | ||||| || | || || || |||
Sbjct 901 CACGCCAAACGCAAGACTGTCACCGCTATGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 842
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | ||||||| || ||
Sbjct 841 CGCACCCTTTATGGCTTCGG 822
>seq170981
Length=14032
Score = 152 bits (168), Expect = 8e-33
Identities = 198/274 (72%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||||| | ||| |||||||||||||||| ||||||||||| || ||
Sbjct 9469 CGCCAAGCGTCATCGCAAAGTTCTGAGAGATAACATCCAAGGCATCACCAAGCCCGCCAT 9410
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || || ||||| ||||| |||||||| ||| | || || | |||| || ||||
Sbjct 9409 TCGGCGCCTTGCTCGGCGTGGAGGAGTCAAACGTATTTCCGGCCTCATCTACGAGGAGAC 9350
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || |||||| | || || ||| ||||| | || ||| || ||| || ||
Sbjct 9349 CCGAGGCGTGTTGAAGGTGTTTCTGGAGAATGTTATTCGGGACGCTGTCACCTACACGGA 9290
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 9289 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTAAAGCGGCAGGG 9230
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705
|| | | || || || ||| ||| | || ||
Sbjct 9229 ACGCACCCTGTACGGCTTCGGAGGTTGAACTGCT 9196
>seq2802187
Length=236
Score = 143 bits (158), Expect = 4e-30
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 16466 ATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT 16525
||||| || ||||||||||| || || || || ||||||||||| ||||| || |||||
Sbjct 1 ATCCAGGGCATCACCAAGCCTGCCATTCGCCGCCTGGCTCGTCGCGGTGGTGTGAAGCGC 60
Query 16526 GTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTT 16585
||||||| | ||||||| |||| || | || ||||| | ||||| ||| |||
Sbjct 61 ATCTCTGGGCTCATCTATGAGGAGACCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTG 120
Query 16586 ATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGAT 16645
|||| || || || ||| || |||||||| ||||| |||||||||||| |||||||
Sbjct 121 ATCCGCGACGCGGTCACCTACACGGAGCACGCCAAACGCAAGACTGTCACCGCCATGGAC 180
Query 16646 ATCGTCTATGCATTGAAACGTCAAGGCCG 16674
| ||||| || | || || || |||||
Sbjct 181 GTGGTCTACGCGCTCAAGCGCCAGGGCCG 209
>seq49630
Length=15172
Score = 132 bits (146), Expect = 7e-27
Identities = 175/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||| || || || | ||| || || ||||||||||| ||||| || || || ||
Sbjct 12030 CGCTAAACGCCACCGTAAGGTTCTGCGGGACAACATCCAAGGTATCACTAAACCGGCCAT 12089
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || |||| || ||||| ||||||||||| |||| || | |||| || ||||
Sbjct 12090 TCGCCGCTTGGCCCGCCGTGGAGGAGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 12149
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| || ||||| | ||||| ||| || |||| || || || ||| |||||
Sbjct 12150 CCGTGGGGTGCTGAAGGTGTTCCTGGAGAATGTGATCCGGGACGCGGTCACCTACACCGA 12209
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||||||||| ||||||| | ||||| || | || || |||||
Sbjct 12210 GCACGCCAAGCGCAAGACTGTCACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAAGG 12269
Query 16672 CCG 16674
||
Sbjct 12270 ACG 12272
>seq358160
Length=7670
Score = 129 bits (142), Expect = 9e-26
Identities = 185/261 (71%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| || | ||| || ||||| || ||||| || || ||||| || ||
Sbjct 4894 CGCGAAGCGTCACCGGAAGGTTCTGCGGGATAATATTCAAGGTATTACTAAGCCTGCGAT 4835
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||| |||||||||||||||| |||||||| |||| || | | ||||| || |
Sbjct 4834 CCGCCGTTTGGCTCGTCGTGGTGGGGTCAAGCGCATCTCAGGCCTCATTTATGAGGAAAC 4775
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || ||||| | ||| | | | ||| || | || || | ||| |||||
Sbjct 4774 TCGCGGGGTGTTGAAAGTGTTCTTGGAAAACGTGATTCGGGACGCAGTTACCTACACCGA 4715
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| || || || ||||| ||||| ||||||| ||||||| || |||| ||||| ||
Sbjct 4714 ACATGCCAAGCGAAAGACGGTCACTGCCATGGACGTCGTCTACGCCCTGAAGCGTCAGGG 4655
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | |||| || || ||
Sbjct 4654 ACGCACTCTTTACGGATTCGG 4634
>seq140002
Length=1114
Score = 127 bits (140), Expect = 3e-25
Identities = 157/213 (74%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||| |||| | | | |||| ||||||| || ||||| ||||| |||||
Sbjct 734 CGCTAAGCGTCACCGCAAAGTTTTGCGAGGCAACATCCTGGGCATCACTAAGCCCGCTAT 793
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || |||||||| |||| ||||||||||| |||| || | |||| || ||||
Sbjct 794 TCGCCGCCTGGCTCGGCGTG--GGAGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 851
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| | ||||| ||| | |||| ||||| || | | |||||
Sbjct 852 CCGCGGGGTGCTGAAGGTGTTCCTGGAGA--ATGATCCGGGATGCAGTCACCGACACCGA 909
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644
|||||| || || || ||||||||| |||||||
Sbjct 910 GCACGCCAAGCGCAAAACTGTCACCGCCATGGA 942
>seq388719
Length=5423
Score = 105 bits (116), Expect = 1e-18
Identities = 192/288 (67%), Gaps = 20/288 (7%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||| |||| | | || || || ||||| || ||||| ||||| || ||
Sbjct 2058 CGCTAAGCGTCACCGCAAGGTTTTGCGCGACAATATCCAGGGCATCACAAAGCCGGCCAT 1999
Query 16492 CCGTCGTCTGGCTCGTCGTGG--------------------TGGAGTCAAGCGTGTCTCT 16531
||| || ||||| || ||||| |||||| ||||
Sbjct 1998 CCGCCGCCTGGCCCGCCGTGGANNNNNNNNNNNNNNNNNNNNNNNNNCAAGCGCATCTCC 1939
Query 16532 GGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCAT 16591
|| | |||| || |||| || | || ||||| | ||||| ||| ||| ||||
Sbjct 1938 GGGCTCATCTACGAGGAGACCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGG 1879
Query 16592 GATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTC 16651
|| || || ||| ||||||||||| || || |||||||||||| ||||||| | |||
Sbjct 1878 GACGCGGTCACCTACACCGAGCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTC 1819
Query 16652 TATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| || | || ||||| ||||| | | ||||| ||||| |||||
Sbjct 1818 TACGCGCTCAAGCGTCAGGGCCGCACTCTCTATGGATTTGGTGGTTAA 1771
>seq322117
Length=3667
Score = 87.8 bits (96), Expect = 3e-13
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| | ||||| ||||||||||| || ||||||||||| || ||
Sbjct 97 CGCCAAGCGCCACCGCAAAGTCCTTCGTGATAACATCCAGGGCATCACCAAGCCTGCCAT 38
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCG 16524
|| || ||||||||||| ||||| || |||||
Sbjct 37 TCGCCGCCTGGCTCGTCGCGGTGGTGTGAAGCG 5
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 76251352773123
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