Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq268701 84.2 6e-12 >seq268701 Length=8118 Score = 84.2 bits (92), Expect = 6e-12 Identities = 137/196 (70%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 32899 GCCACCAAGCATTTGCATGGTTCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATT 32958 ||| || |||| ||||||||| || | | | || | || |||||| ||| | || || Sbjct 7904 GCCGCCGAGCAGTTGCATGGTGCCTTGCATGTCGACCACGATTTCGGTGGTGTAACGCTT 7963 Query 32959 C-TGTCCACTTTGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAG 33017 || | |||| | ||| | | || ||| ||||||||||| ||||||| | Sbjct 7964 GATGCCGTCTTTT----TCCCACTCGCGGGTTTGCAGTTTGCCTTCAATGTAAACCTGCG 8019 Query 33018 AGCCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGT 33077 | ||||| ||||| || || | ||| |||||||||| || ||| |||| |||||||| Sbjct 8020 AACCTTTGCGCAGGTATTCACCGGCGATTTCTGCCACCTTGCCGAACATCGACACACGGT 8079 Query 33078 GCCACTCCGTCTGCTC 33093 |||| || || | ||| Sbjct 8080 GCCATTCGGTTTTCTC 8095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144458515505684