Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_006953.1 Length=37966 Score E Sequences producing significant alignments: (Bits) Value seq3087344 149 1e-31 seq3083971 149 1e-31 >seq3087344 Length=5003 Score = 149 bits (164), Expect = 1e-31 Identities = 555/860 (65%), Gaps = 15/860 (2%) Strand=Plus/Minus Query 10078 CCCAAGTAAGGA-ATT-AGCAAATGGCTACTACAGTAAACTCTGATTTAGTAATCTACAA 10135 |||||||||||| ||| | | |||||||| || || ||| || | | |||||||| Sbjct 4297 CCCAAGTAAGGAGATTGACCCCATGGCTACAACCGTTAACAGCGACCTGATCATCTACAA 4238 Query 10136 CGATACAGCCCAGACTGCGTACCTAGAGCGCAACATGGACAACCTAGCTGTGTTCAACGA 10195 |||| || || || || ||||| ||||| | ||||||||| | ||||||||||| Sbjct 4237 CGATGAGGCGCAAACCGCATACCTGGAGCGTGTCCAGGACAACCTGGATGTGTTCAACGC 4178 Query 10196 AAACTCACGCGCTGCAATTGGCCTTAACTCTGAGCTAATCGAAGGCGACTTGAAGCTA-C 10254 | || || || || | || || ||||| |||||||||||||| || | | Sbjct 4177 ATCGTCCAACGGCGCGATGGTGCTGGACAACGAGCTGATCGAAGGCGACTTCC-GCAAGC 4119 Query 10255 GTTCATTCTACAAAGTGGGCGGCGCTATCGCTGACCGTGATGTGAATTCA-ACGGCTACC 10313 | | ||||||| || ||||| || | | | || || || || || ||||| | Sbjct 4118 GCGCGCTCTACAAGCTGAGCGGCTCTCTGGAGCATCGCGACGTCAACTCCGACGGCAAG- 4060 Query 10314 GTTGCAGGTACTAAGATTGCAGCGGATGAAATGGTATCAGTG--AAAGTGCCTTGGAAAT 10371 || | | | ||||| ||||| | | | | || | | |||| || ||||| | Sbjct 4059 GTAACTGCCAAGAAGAT--CAGCGCCGGCGAAGCTGTCGGCGTCAAAGCTCCCTGGAAGT 4002 Query 10372 ATGGCCCATACGAAACCACAGAAGAAGCATTCAAGCGTCGCGCACGCTCTCCTGAAGAGT 10431 | ||||| || | ||||| ||||| || |||||||| |||| || | || |||| Sbjct 4001 ACGGCCCGTATCAGACCACCGAAGAGGCCTTCAAGCGCCGCGGTCGTCCGGTCGAGGAGT 3942 Query 10432 TCTCTATGCTAATCGGTCAAGATATGGCTGACGCAACTATGGCTGGCTGGATTGGCTACG 10491 |||| | | |||| || | ||||| || || ||| |||| || |||| Sbjct 3941 TCTCCCAGATCGTCGGCGCCGACGTTGCTGATGCGACCTTGGAAGGCTTCATCCAGTACG 3882 Query 10492 CA-CTAAACGCACTGCAAGGTGCGATTGGCTCTAACGCTGGCATGAATGTGTCTGGTGAG 10550 || || || || | | || || ||||| ||||||| |||| || || | | Sbjct 3881 CAACTGCTGGC-CTCCGTGCCGCCATCGGCTCCAACGCTGACATGGTGGTTTCGGCCAAC 3823 Query 10551 CTTGCAACCGAAGGTAAGAAGGTTCTTACTAAAGGTTTGCGCACAATGGGCGACAAAG-C 10609 | | |||||| || |||||| || ||| ||| |||| | | |||||||| | Sbjct 3822 ATCGAAACCGACGGCAAGAAGACGCTGACTCGCGGTATGCGAAAGTTCGGCGACAAGTTC 3763 Query 10610 GTCATCTATCGCTATTTGGGTGATGGATTCAACGTCTTACTTCGACATCGTTGATGAAGC 10669 | | ||| ||| | ||||| ||| | || | | |||||||||||||| || ||||| Sbjct 3762 GGCCG-TATTGCTCTGTGGGTCATGCACTCCAGCGCCTACTTCGACATCGTCGACGAAGC 3704 Query 10670 TATCGACAACAAGCTTTATGAAGAAGCTGGTGTTGTGGTTTACGGTGGCACACCNNNNNN 10729 ||| ||||||| | || ||||||||||| |||||| | ||||| ||| || Sbjct 3703 CATCACCAACAAGATCTACGAAGAAGCTGGCGTTGTGATCTACGGCGGCCTGCCGGGCAC 3644 Query 10730 NNNNNNNNNNNNNGTGCTTGTTACTGACCAATGTCCAGCAACTAAGATTTTCGGTCTTGT 10789 || || || || ||| || || | ||| ||||| || | Sbjct 3643 TTTGGGCAAGCCTGTACTGGTGACCGACACCGCGCCGGCGGATGTGATCTTCGGCCTGCT 3584 Query 10790 GGCTGGCGCGGTAATGATTACTGAGTCCCAAGCACCTGGTATGCGTTCTTACCAAATCGA 10849 | | ||| |||| || || ||||| || || || || | ||||| ||| || | | Sbjct 3583 GCCAAACGCCGTAA-CATCACCGAGTCGCAGGCGCCGGGCTTCCGTTCCTACGAAGTGAA 3525 Query 10850 CGACCAAGAAAACTTGGCTATTGGTTTCCGTGCTGAGGGTACGGCTAACGTTGAAGTTCT 10909 |||| |||||||| || || || | ||| || || || || | || | || || || Sbjct 3524 CGACGAAGAAAACCTGAGCATCGGCTACCGCGCGGAAGGCACCGTGAATATCGATGTGCT 3465 Query 10910 TGGTTACAAATGGAAAACCA 10929 ||||||| |||||| ||| Sbjct 3464 GGGTTACAGCTGGAAAGCCA 3445 >seq3083971 Length=2830 Score = 149 bits (164), Expect = 1e-31 Identities = 446/677 (66%), Gaps = 15/677 (2%) Strand=Plus/Minus Query 10049 AGCATGGTCAGGCTGCATACTTAAAACTACCCAAGTAAGG--AATTAGCAAATGGCTACT 10106 |||| || || | ||||| | || | ||||||||||| || | | | |||| || Sbjct 2153 AGCACGGCCAAACCGCATATCTGCAATTGCCCAAGTAAGGGGAAACACCCA-TGGCGACA 2095 Query 10107 ACAGTAAACTCTGATTTAGTAATCTACAACGATACAGCCCAGACTGCGTACCTAGAGCGC 10166 || || ||| || | | |||||||||||| || || || || ||||| || || Sbjct 2094 ACCGTCAACAGCGACCTGATCATCTACAACGATGAGGCGCAAACCGCATACCTGGAACGT 2035 Query 10167 AACATGGACAACCTAGCTGTGTTCAACGAAAACTCACGCGCTGCAATTGGCCT---TAAC 10223 ||||||||| | ||| ||||| | | ||| || || || | ||| |||| Sbjct 2034 GTTCAGGACAACCTGGATGTATTCAATGCATCCTCCAACGGCGCCATCGTCCTCGATAAC 1975 Query 10224 TCTGAGCTAATCGAAGGCGACTTGAAGCTA-CGTTCATTCTACAAAGTGGGCGGCGCTAT 10282 || | ||||||||||| || || | || | ||||||||| | ||||||| | Sbjct 1974 ---GAAATGATCGAAGGCGATTTCC-GCAAGCGCGCTTTCTACAAACTCGGCGGCGGCCT 1919 Query 10283 CGCTGACCGTGATGTGAATTCAACGGCTACCGTTGCAGGTACTAAGATTGCAGCGGATGA 10342 | | |||| || || || || || | || | | ||||| | || | || Sbjct 1918 GGATCACCGCGACGTCAACTCCGAAGCCAAAGTGGTTTCGAAGAAGATCGGCGCTGGCGA 1859 Query 10343 AATGGTATCAGTGAAAGTGCCTTGGAAATATGGCCCATACGAAACCACAGAAGAAGCATT 10402 | || ||||| | || |||||||||||||||||| ||||||| ||||| || || Sbjct 1858 AGCTGTTGGTGTGAAGGCTCCGTGGAAATATGGCCCATACCAAACCACCGAAGAGGCGTT 1799 Query 10403 CAAGCGTCGCGCACGCTCTCCTGAAGAGTTCTCTATGCTAATCGGTCAAGATATGGCTGA 10462 ||||||||||| || | || |||||||| | ||||| || |||| || Sbjct 1798 CAAGCGTCGCGGCCGTCCGGTGGATGAGTTCTCCCAAATCATCGGCGTTGACGTGGCCGA 1739 Query 10463 CGCAACTATGGCTGGCTGGATTGGCTACG-CACTAAACGCACTGCAAGGTGCGATTGGCT 10521 ||| || ||| |||| || ||||| ||| | || |||| | ||||| |||| Sbjct 1738 CGCTACCCTGGAAGGCTTCATCCACTACGCCACCGCA-GCTCTGCGTGCCGCGATCGGCT 1680 Query 10522 CTAACGCTGGCATGAATGTGTCTGGTGAGCTTGCAACCGAAGGTAAGAAGGTTCTTACTA 10581 | |||||||||||| ||| || | | | | |||||| || |||||| || || Sbjct 1679 CCAACGCTGGCATGGTTGTCTCGGCCAACATCGAAACCGACGGCAAGAAGACCCTGACCC 1620 Query 10582 AAGGTTTGCGCACAATGGGCGACAAAGCGTCATC-TATCGCTATTTGGGTGATGGATTCA 10640 || |||||| | | |||||| ||| || || || | ||||| ||| | ||| Sbjct 1619 GCGGCATGCGCAAATTCGGCGAC-AAGTTCGGTCGCATTGCCCTGTGGGTCATGCACTCA 1561 Query 10641 ACGTCTTACTTCGACATCGTTGATGAAGCTATCGACAACAAGCTTTATGAAGAAGCTGGT 10700 || | || ||||||||||| || ||||| |||| |||||| | || || ||||| || Sbjct 1560 TCGGCCTATTTCGACATCGTGGACGAAGCGATCGCGAACAAGGTCTACGAGGAAGCCGGC 1501 Query 10701 GTTGTGGTTTACGGTGG 10717 || || | ||||| || Sbjct 1500 GTAGTCATCTACGGCGG 1484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116918240282096