Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_006953.1
Length=37966
Score E
Sequences producing significant alignments: (Bits) Value
seq3087344 149 1e-31
seq3083971 149 1e-31
>seq3087344
Length=5003
Score = 149 bits (164), Expect = 1e-31
Identities = 555/860 (65%), Gaps = 15/860 (2%)
Strand=Plus/Minus
Query 10078 CCCAAGTAAGGA-ATT-AGCAAATGGCTACTACAGTAAACTCTGATTTAGTAATCTACAA 10135
|||||||||||| ||| | | |||||||| || || ||| || | | ||||||||
Sbjct 4297 CCCAAGTAAGGAGATTGACCCCATGGCTACAACCGTTAACAGCGACCTGATCATCTACAA 4238
Query 10136 CGATACAGCCCAGACTGCGTACCTAGAGCGCAACATGGACAACCTAGCTGTGTTCAACGA 10195
|||| || || || || ||||| ||||| | ||||||||| | |||||||||||
Sbjct 4237 CGATGAGGCGCAAACCGCATACCTGGAGCGTGTCCAGGACAACCTGGATGTGTTCAACGC 4178
Query 10196 AAACTCACGCGCTGCAATTGGCCTTAACTCTGAGCTAATCGAAGGCGACTTGAAGCTA-C 10254
| || || || || | || || ||||| |||||||||||||| || | |
Sbjct 4177 ATCGTCCAACGGCGCGATGGTGCTGGACAACGAGCTGATCGAAGGCGACTTCC-GCAAGC 4119
Query 10255 GTTCATTCTACAAAGTGGGCGGCGCTATCGCTGACCGTGATGTGAATTCA-ACGGCTACC 10313
| | ||||||| || ||||| || | | | || || || || || ||||| |
Sbjct 4118 GCGCGCTCTACAAGCTGAGCGGCTCTCTGGAGCATCGCGACGTCAACTCCGACGGCAAG- 4060
Query 10314 GTTGCAGGTACTAAGATTGCAGCGGATGAAATGGTATCAGTG--AAAGTGCCTTGGAAAT 10371
|| | | | ||||| ||||| | | | | || | | |||| || ||||| |
Sbjct 4059 GTAACTGCCAAGAAGAT--CAGCGCCGGCGAAGCTGTCGGCGTCAAAGCTCCCTGGAAGT 4002
Query 10372 ATGGCCCATACGAAACCACAGAAGAAGCATTCAAGCGTCGCGCACGCTCTCCTGAAGAGT 10431
| ||||| || | ||||| ||||| || |||||||| |||| || | || ||||
Sbjct 4001 ACGGCCCGTATCAGACCACCGAAGAGGCCTTCAAGCGCCGCGGTCGTCCGGTCGAGGAGT 3942
Query 10432 TCTCTATGCTAATCGGTCAAGATATGGCTGACGCAACTATGGCTGGCTGGATTGGCTACG 10491
|||| | | |||| || | ||||| || || ||| |||| || ||||
Sbjct 3941 TCTCCCAGATCGTCGGCGCCGACGTTGCTGATGCGACCTTGGAAGGCTTCATCCAGTACG 3882
Query 10492 CA-CTAAACGCACTGCAAGGTGCGATTGGCTCTAACGCTGGCATGAATGTGTCTGGTGAG 10550
|| || || || | | || || ||||| ||||||| |||| || || | |
Sbjct 3881 CAACTGCTGGC-CTCCGTGCCGCCATCGGCTCCAACGCTGACATGGTGGTTTCGGCCAAC 3823
Query 10551 CTTGCAACCGAAGGTAAGAAGGTTCTTACTAAAGGTTTGCGCACAATGGGCGACAAAG-C 10609
| | |||||| || |||||| || ||| ||| |||| | | |||||||| |
Sbjct 3822 ATCGAAACCGACGGCAAGAAGACGCTGACTCGCGGTATGCGAAAGTTCGGCGACAAGTTC 3763
Query 10610 GTCATCTATCGCTATTTGGGTGATGGATTCAACGTCTTACTTCGACATCGTTGATGAAGC 10669
| | ||| ||| | ||||| ||| | || | | |||||||||||||| || |||||
Sbjct 3762 GGCCG-TATTGCTCTGTGGGTCATGCACTCCAGCGCCTACTTCGACATCGTCGACGAAGC 3704
Query 10670 TATCGACAACAAGCTTTATGAAGAAGCTGGTGTTGTGGTTTACGGTGGCACACCNNNNNN 10729
||| ||||||| | || ||||||||||| |||||| | ||||| ||| ||
Sbjct 3703 CATCACCAACAAGATCTACGAAGAAGCTGGCGTTGTGATCTACGGCGGCCTGCCGGGCAC 3644
Query 10730 NNNNNNNNNNNNNGTGCTTGTTACTGACCAATGTCCAGCAACTAAGATTTTCGGTCTTGT 10789
|| || || || ||| || || | ||| ||||| || |
Sbjct 3643 TTTGGGCAAGCCTGTACTGGTGACCGACACCGCGCCGGCGGATGTGATCTTCGGCCTGCT 3584
Query 10790 GGCTGGCGCGGTAATGATTACTGAGTCCCAAGCACCTGGTATGCGTTCTTACCAAATCGA 10849
| | ||| |||| || || ||||| || || || || | ||||| ||| || | |
Sbjct 3583 GCCAAACGCCGTAA-CATCACCGAGTCGCAGGCGCCGGGCTTCCGTTCCTACGAAGTGAA 3525
Query 10850 CGACCAAGAAAACTTGGCTATTGGTTTCCGTGCTGAGGGTACGGCTAACGTTGAAGTTCT 10909
|||| |||||||| || || || | ||| || || || || | || | || || ||
Sbjct 3524 CGACGAAGAAAACCTGAGCATCGGCTACCGCGCGGAAGGCACCGTGAATATCGATGTGCT 3465
Query 10910 TGGTTACAAATGGAAAACCA 10929
||||||| |||||| |||
Sbjct 3464 GGGTTACAGCTGGAAAGCCA 3445
>seq3083971
Length=2830
Score = 149 bits (164), Expect = 1e-31
Identities = 446/677 (66%), Gaps = 15/677 (2%)
Strand=Plus/Minus
Query 10049 AGCATGGTCAGGCTGCATACTTAAAACTACCCAAGTAAGG--AATTAGCAAATGGCTACT 10106
|||| || || | ||||| | || | ||||||||||| || | | | |||| ||
Sbjct 2153 AGCACGGCCAAACCGCATATCTGCAATTGCCCAAGTAAGGGGAAACACCCA-TGGCGACA 2095
Query 10107 ACAGTAAACTCTGATTTAGTAATCTACAACGATACAGCCCAGACTGCGTACCTAGAGCGC 10166
|| || ||| || | | |||||||||||| || || || || ||||| || ||
Sbjct 2094 ACCGTCAACAGCGACCTGATCATCTACAACGATGAGGCGCAAACCGCATACCTGGAACGT 2035
Query 10167 AACATGGACAACCTAGCTGTGTTCAACGAAAACTCACGCGCTGCAATTGGCCT---TAAC 10223
||||||||| | ||| ||||| | | ||| || || || | ||| ||||
Sbjct 2034 GTTCAGGACAACCTGGATGTATTCAATGCATCCTCCAACGGCGCCATCGTCCTCGATAAC 1975
Query 10224 TCTGAGCTAATCGAAGGCGACTTGAAGCTA-CGTTCATTCTACAAAGTGGGCGGCGCTAT 10282
|| | ||||||||||| || || | || | ||||||||| | ||||||| |
Sbjct 1974 ---GAAATGATCGAAGGCGATTTCC-GCAAGCGCGCTTTCTACAAACTCGGCGGCGGCCT 1919
Query 10283 CGCTGACCGTGATGTGAATTCAACGGCTACCGTTGCAGGTACTAAGATTGCAGCGGATGA 10342
| | |||| || || || || || | || | | ||||| | || | ||
Sbjct 1918 GGATCACCGCGACGTCAACTCCGAAGCCAAAGTGGTTTCGAAGAAGATCGGCGCTGGCGA 1859
Query 10343 AATGGTATCAGTGAAAGTGCCTTGGAAATATGGCCCATACGAAACCACAGAAGAAGCATT 10402
| || ||||| | || |||||||||||||||||| ||||||| ||||| || ||
Sbjct 1858 AGCTGTTGGTGTGAAGGCTCCGTGGAAATATGGCCCATACCAAACCACCGAAGAGGCGTT 1799
Query 10403 CAAGCGTCGCGCACGCTCTCCTGAAGAGTTCTCTATGCTAATCGGTCAAGATATGGCTGA 10462
||||||||||| || | || |||||||| | ||||| || |||| ||
Sbjct 1798 CAAGCGTCGCGGCCGTCCGGTGGATGAGTTCTCCCAAATCATCGGCGTTGACGTGGCCGA 1739
Query 10463 CGCAACTATGGCTGGCTGGATTGGCTACG-CACTAAACGCACTGCAAGGTGCGATTGGCT 10521
||| || ||| |||| || ||||| ||| | || |||| | ||||| ||||
Sbjct 1738 CGCTACCCTGGAAGGCTTCATCCACTACGCCACCGCA-GCTCTGCGTGCCGCGATCGGCT 1680
Query 10522 CTAACGCTGGCATGAATGTGTCTGGTGAGCTTGCAACCGAAGGTAAGAAGGTTCTTACTA 10581
| |||||||||||| ||| || | | | | |||||| || |||||| || ||
Sbjct 1679 CCAACGCTGGCATGGTTGTCTCGGCCAACATCGAAACCGACGGCAAGAAGACCCTGACCC 1620
Query 10582 AAGGTTTGCGCACAATGGGCGACAAAGCGTCATC-TATCGCTATTTGGGTGATGGATTCA 10640
|| |||||| | | |||||| ||| || || || | ||||| ||| | |||
Sbjct 1619 GCGGCATGCGCAAATTCGGCGAC-AAGTTCGGTCGCATTGCCCTGTGGGTCATGCACTCA 1561
Query 10641 ACGTCTTACTTCGACATCGTTGATGAAGCTATCGACAACAAGCTTTATGAAGAAGCTGGT 10700
|| | || ||||||||||| || ||||| |||| |||||| | || || ||||| ||
Sbjct 1560 TCGGCCTATTTCGACATCGTGGACGAAGCGATCGCGAACAAGGTCTACGAGGAAGCCGGC 1501
Query 10701 GTTGTGGTTTACGGTGG 10717
|| || | ||||| ||
Sbjct 1500 GTAGTCATCTACGGCGG 1484
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 116918240282096
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |