Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq171071 141 1e-28
seq195088 105 7e-18
seq332822 96.9 4e-15
seq2658871 82.4 8e-11
seq190499 82.4 8e-11
>seq171071
Length=14313
Score = 141 bits (156), Expect = 1e-28
Identities = 117/143 (82%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712
|| || || |||||||||| | ||||||| ||||||| ||||||||| ||||| |
Sbjct 9486 AGCTCCTCCTCCGTTTCAAACTGAACAAGAACAGCTCCCAGTGAAGTACAGAATGTCTGA 9427
Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772
| ||||||||||| ||||| ||||| ||||| ||||| || ||||| || |||||||||
Sbjct 9426 CTGAATGTCCAATTCTTTGAGTCTTCCGAAAAATAAAAACACTTATACCCGAATCCAATC 9367
Query 130773 CATCCCTTTGGGCAAGTAACATA 130795
||||| ||||||||||| |||||
Sbjct 9366 CATCCTTTTGGGCAAGTGACATA 9344
Score = 118 bits (130), Expect = 1e-21
Identities = 106/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 130412 TGAATTATTAGAAGGTATATAGATATTAGTATATGTTTTACTACAAATCCATTTTCTATT 130471
|||| || | | ||||| ||| |||| ||| ||| || || |||||||| ||||||||
Sbjct 11795 TGAAGTACTTAAGGGTATGAAGACATTACTATTTGTCTTGCTGCAAATCCACTTTCTATT 11736
Query 130472 CGCATAAACTCTGGAGCTACTAATTCTGATGTCATTAAGATATGCACATTCTCCAGTTCC 130531
||||| || ||||| ||||||||||||| ||||| || || ||| |||| ||||||||
Sbjct 11735 TGCATATACCCTGGAACTACTAATTCTGACATCATTCAGGTAGGCATATTCCCCAGTTCC 11676
Query 130532 TGTAATAACAAAT 130544
||| || ||||||
Sbjct 11675 TGTGATGACAAAT 11663
Score = 96.9 bits (106), Expect = 4e-15
Identities = 82/101 (81%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 130551 TTATAATTTGAATTATCTGCCCATTTCCAAGGATGATTTGAAGATTCTCTGTTAAGTCCG 130610
||||| | || || |||| ||| ||||||||||||| ||| ||||||||| |||| ||
Sbjct 10187 TTATATGTAGAGTTGTCTGTCCACTTCCAAGGATGATGTGATGATTCTCTGCTAAGGCCA 10128
Query 130611 ATCCAATGATCTGAAGAATCTTTATATCTTTTTAAAAAATT 130651
|||||||| || ||||| ||||| |||||||| | ||| ||
Sbjct 10127 ATCCAATGGTCGGAAGAGTCTTTGTATCTTTTCAGAAAGTT 10087
>seq195088
Length=610
Score = 105 bits (116), Expect = 7e-18
Identities = 102/131 (78%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724
||||||| | | ||||| ||| | |||||||||| ||||| | | |||||||||
Sbjct 212 GTTTCAAACTGAGCAAGAACAGCTTCACATGAAGTACAGAATGTCTGACTGAATGTCCAA 153
Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784
|| ||||| ||||||||||| ||||| || ||| ||||||||||||||||| | ||||
Sbjct 152 TTCTTTGAGTCTTCAGAAAAATAAAAACACTTACGCCCAAATCCAATCCATCCTTCTGGG 93
Query 130785 CAAGTAACATA 130795
|| | |||||
Sbjct 92 CAGGGGACATA 82
>seq332822
Length=31618
Score = 96.9 bits (106), Expect = 4e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| |||||||| | ||| ||||||||| ||| || ||||| | | |
Sbjct 5271 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 5212
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||| || ||||| ||| || || |||||||| || || || || || || ||
Sbjct 5211 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTT 5152
Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276
||||||||||||| |||||||| | || |||
Sbjct 5151 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 5121
>seq2658871
Length=189
Score = 82.4 bits (90), Expect = 8e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227
||||||| | |||||| | ||||| || | ||||| || || || || || ||||| |
Sbjct 83 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 142
Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267
| |||| ||| ||| ||||||||| ||||||||||||||
Sbjct 143 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTC 182
>seq190499
Length=15819
Score = 82.4 bits (90), Expect = 8e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 130551 TTATAATTTGAATTATCTGCCCATTTCCAAGGATGATTTGAAGATTCTCTGTTAAGTCCG 130610
||||| || || || ||||||||||||||| ||||| ||| |||||||| |||| ||
Sbjct 14983 TTATATTTAGAGTTGTCTGCCCATTTCCAAACATGATGTGATGATTCTCTACTAAGGCCA 15042
Query 130611 ATCCAATGATCTGAAGAATCTTTATATCTT 130640
|||||||| || |||| |||| ||||||
Sbjct 15043 ATCCAATGGTCAGAAGGGCCTTTGTATCTT 15072
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511366031603640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |