Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq171071 141 1e-28 seq195088 105 7e-18 seq332822 96.9 4e-15 seq2658871 82.4 8e-11 seq190499 82.4 8e-11 >seq171071 Length=14313 Score = 141 bits (156), Expect = 1e-28 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || |||||||||| | ||||||| ||||||| ||||||||| ||||| | Sbjct 9486 AGCTCCTCCTCCGTTTCAAACTGAACAAGAACAGCTCCCAGTGAAGTACAGAATGTCTGA 9427 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| ||||| ||||| ||||| ||||| || ||||| || ||||||||| Sbjct 9426 CTGAATGTCCAATTCTTTGAGTCTTCCGAAAAATAAAAACACTTATACCCGAATCCAATC 9367 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| ||||||||||| ||||| Sbjct 9366 CATCCTTTTGGGCAAGTGACATA 9344 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 130412 TGAATTATTAGAAGGTATATAGATATTAGTATATGTTTTACTACAAATCCATTTTCTATT 130471 |||| || | | ||||| ||| |||| ||| ||| || || |||||||| |||||||| Sbjct 11795 TGAAGTACTTAAGGGTATGAAGACATTACTATTTGTCTTGCTGCAAATCCACTTTCTATT 11736 Query 130472 CGCATAAACTCTGGAGCTACTAATTCTGATGTCATTAAGATATGCACATTCTCCAGTTCC 130531 ||||| || ||||| ||||||||||||| ||||| || || ||| |||| |||||||| Sbjct 11735 TGCATATACCCTGGAACTACTAATTCTGACATCATTCAGGTAGGCATATTCCCCAGTTCC 11676 Query 130532 TGTAATAACAAAT 130544 ||| || |||||| Sbjct 11675 TGTGATGACAAAT 11663 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 130551 TTATAATTTGAATTATCTGCCCATTTCCAAGGATGATTTGAAGATTCTCTGTTAAGTCCG 130610 ||||| | || || |||| ||| ||||||||||||| ||| ||||||||| |||| || Sbjct 10187 TTATATGTAGAGTTGTCTGTCCACTTCCAAGGATGATGTGATGATTCTCTGCTAAGGCCA 10128 Query 130611 ATCCAATGATCTGAAGAATCTTTATATCTTTTTAAAAAATT 130651 |||||||| || ||||| ||||| |||||||| | ||| || Sbjct 10127 ATCCAATGGTCGGAAGAGTCTTTGTATCTTTTCAGAAAGTT 10087 >seq195088 Length=610 Score = 105 bits (116), Expect = 7e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724 ||||||| | | ||||| ||| | |||||||||| ||||| | | ||||||||| Sbjct 212 GTTTCAAACTGAGCAAGAACAGCTTCACATGAAGTACAGAATGTCTGACTGAATGTCCAA 153 Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784 || ||||| ||||||||||| ||||| || ||| ||||||||||||||||| | |||| Sbjct 152 TTCTTTGAGTCTTCAGAAAAATAAAAACACTTACGCCCAAATCCAATCCATCCTTCTGGG 93 Query 130785 CAAGTAACATA 130795 || | ||||| Sbjct 92 CAGGGGACATA 82 >seq332822 Length=31618 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| |||||||| | ||| ||||||||| ||| || ||||| | | | Sbjct 5271 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 5212 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 5211 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTT 5152 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||||||||||||| |||||||| | || ||| Sbjct 5151 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 5121 >seq2658871 Length=189 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | |||||| | ||||| || | ||||| || || || || || ||||| | Sbjct 83 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 142 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 | |||| ||| ||| ||||||||| |||||||||||||| Sbjct 143 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTC 182 >seq190499 Length=15819 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 130551 TTATAATTTGAATTATCTGCCCATTTCCAAGGATGATTTGAAGATTCTCTGTTAAGTCCG 130610 ||||| || || || ||||||||||||||| ||||| ||| |||||||| |||| || Sbjct 14983 TTATATTTAGAGTTGTCTGCCCATTTCCAAACATGATGTGATGATTCTCTACTAAGGCCA 15042 Query 130611 ATCCAATGATCTGAAGAATCTTTATATCTT 130640 |||||||| || |||| |||| |||||| Sbjct 15043 ATCCAATGGTCAGAAGGGCCTTTGTATCTT 15072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511366031603640