Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 165 1e-35
seq58757 134 2e-26
seq2306809 118 1e-21
seq142543 111 2e-19
seq85459 111 2e-19
seq141641 98.7 1e-15
seq20229 96.9 4e-15
seq194669 82.4 9e-11
>seq28392
Length=738
Score = 165 bits (182), Expect = 1e-35
Identities = 274/396 (69%), Gaps = 0/396 (0%)
Strand=Plus/Plus
Query 33040 AAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACA 33099
|| || ||||| || || |||| ||| ||||||||||| || ||||| ||||| ||
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60
Query 33100 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATAT 33159
| ||| || |||| |||| || || | |||||| || ||||| || || ||
Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120
Query 33160 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAAT 33219
||||||| || ||||| || || || || || || || ||| | || || ||
Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180
Query 33220 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGA 33279
|| ||||| || || |||| || || | | || | | ||| |||
Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTTTG 240
Query 33280 TGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTA 33339
||||| | ||||| ||||| | || || || || ||||||| |||||| ||||| |||
Sbjct 241 TGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTA 300
Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399
|| ||||| ||||||||||||| || ||||| || || || || || ||||| |||||
Sbjct 301 ATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATC 360
Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACT 33435
|| || || || || ||||||||||| ||||| |||
Sbjct 361 GACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396
>seq58757
Length=22028
Score = 134 bits (148), Expect = 2e-26
Identities = 112/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| |
Sbjct 18135 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATT 18194
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
||||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 18195 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 18254
Query 62457 CTATTTCTAAGACCGTA 62473
|| ||||| | ||| ||
Sbjct 18255 CTGTTTCTTATACCATA 18271
>seq2306809
Length=138
Score = 118 bits (130), Expect = 1e-21
Identities = 109/138 (79%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 33611 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 33670
||||||| ||||| || || || || |||||||| | || ||||||||||| ||||||
Sbjct 1 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTT 60
Query 33671 TACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33730
||||| || ||| ||||||||||||| ||||| || ||||| |||||||| || ||||
Sbjct 61 GGCAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 120
Query 33731 ATACATGTTTTATAAAAT 33748
||||| |||||||
Sbjct 121 GCACATGGGAAATAAAAT 138
>seq142543
Length=7870
Score = 111 bits (122), Expect = 2e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387
|| ||||| || || || || |||||||| |||||||||||||| || || | || ||
Sbjct 6769 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 6828
Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446
||||| ||||| | ||| || ||||| || ||||| ||||||||||| |||||||||||
Sbjct 6829 AGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 6887
>seq85459
Length=10496
Score = 111 bits (122), Expect = 2e-19
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623
|||||||| |||||||| || | |||||||||||||| ||||| |||||||| |||||
Sbjct 6860 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 6801
Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683
|| || || || |||||||||| || ||||||||||| |||||| | ||| || ||
Sbjct 6800 AATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTCTTGGCTAAACCGCTC 6741
Query 33684 CGCC 33687
| ||
Sbjct 6740 CACC 6737
Score = 109 bits (120), Expect = 7e-19
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 33339 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33398
||| ||||| |||||||||||||| || |||||||| || || || || ||||| |||||
Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884
Query 33399 GGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446
|| || || || || ||||||||||| ||||| ||||| ||||||||
Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 8836
>seq141641
Length=332
Score = 98.7 bits (108), Expect = 1e-15
Identities = 141/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745
||||||||||||| ||||| || ||||| |||||||| || |||| ||||| ||||
Sbjct 332 CCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAA 273
Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTT 33805
||| | | || || || | || | ||| | | || || || || | || || |
Sbjct 272 AATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCT 213
Query 33806 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATT 33865
| || |||||||||| || ||||| || || |||||||| | ||| || |||| ||||
Sbjct 212 CCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATT 153
Query 33866 GGATTGGGAAAATAACAAA 33884
|| || || || |||||
Sbjct 152 TAATAGGAAAGATGACAAA 134
>seq20229
Length=11930
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| |||||| ||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 8024 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 8083
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
|| || || |||||||| ||||| || | ||| |||||| | | || || |||||||
Sbjct 8084 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 8143
Query 63332 CGGTTCCAAGTATATGGC 63349
||||||| ||| || ||
Sbjct 8144 AGGTTCCAGGTAAATAGC 8161
Score = 91.5 bits (100), Expect = 2e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634
|||| || || ||||| || | || || || || ||||| || || || || || || |
Sbjct 1644 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 1703
Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694
||||||||||||| ||||||| |||||| | || || || | || ||||| || |
Sbjct 1704 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 1763
Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754
| | | |||||||| || || || | ||||| || ||||| || || || | ||| |
Sbjct 1764 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 1823
Query 62755 TCTTATTAGA 62764
||||| ||
Sbjct 1824 GTTTATTCGA 1833
>seq194669
Length=4388
Score = 82.4 bits (90), Expect = 9e-11
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745
|||||||||||||||| ||||| ||||||||||||||||| || || | || ||||
Sbjct 1254 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAAATAA 1195
Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 33803
|||| || || |||| | | || || ||||| | | | ||| || |||| ||| ||
Sbjct 1194 AATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 1137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 598897459004760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |