Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq333413 149 2e-31 seq3043706 134 4e-27 seq3088057 127 6e-25 seq317828 80.6 7e-11 >seq333413 Length=629 Score = 149 bits (164), Expect = 2e-31 Identities = 307/453 (68%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 27265 GTGAGCAAAATCCATTGGCCGACGCGATGTGCCTGCGCCTGCGACGTGCACCCGAACGCA 27324 || ||||| ||||| ||||| ||| || || |||||||| || ||||| ||| || Sbjct 449 GTCAGCAACGCCCATTTGCCGATGCGCTGGGCTTGCGCCTGGGAGGTGCAACCGGTGGCG 390 Query 27325 GTAACCTGCGTCTTAATGACGCCGTAGCGCGCGATCCCGTCTTCGTCCGGCACGTATT-C 27383 | | || || | || ||||||||| ||||| || || |||| ||||||| | Sbjct 389 CTGATCTCGGTTTGCTGGATGCCGTAGCGGGCGATGCCTTCGGCGTCGTCGACGTATTGC 330 Query 27384 AACGGCTTGCTTGTACTGGTTCGCCGGGTCGTTATAGCTGACGAGCGCGACCGTGTACCG 27443 | | || || ||| | | |||||| || | ||||| || ||||| ||||| || Sbjct 329 ACCTTCTGGCG-GTAGAAATCGGTCGGGTCATTCCAACTGACCAGGGCGACGGTGTAGCG 271 Query 27444 CGTCTTACGCTCGCTGCCGACATACCGGAACGAGCCATCGATCACGTTCGCCGCCGTGTA 27503 ||||| | | |||| | || |||| ||| |||||||||| || | ||| Sbjct 270 GGTCTTTTTCGCCGAGCCGCCGTAGATGAACTGGCCGCCGATCACGTTGGCGTTGGAGTA 211 Query 27504 CACGTACACCGGATCTGACGGCATGTCCGCCGATGCGACGACAGCTCCCGGCCCCCAGTA 27563 ||| ||||| ||| ||||||||||||| || | || | || | ||||| || Sbjct 210 GGTGTAGACCGGGTCTTCCGGCATGTCCGCCACGGCCATTACCGAACCTGCGCCCCAATA 151 Query 27564 GGCGATGCCGCGGAACACGCTCGCGATGTCCTGCAACACCTTGAACGCGTCGGC---CGC 27620 || ||||| ||||| | |||| | ||| |||| ||| || ||||| ||||| | | Sbjct 150 GGACATGCCACGGAAAGTGGTCGCCAGGTCTTGCAGCACTTTCAACGCATCGGCACGCAC 91 Query 27621 CGACTGGATCACGCAGTTGCAGGCGAATCGCGGCTCGACGCCGCCTTTTCCGTCCGACAC 27680 |||| || || |||||||| ||| ||||| ||| |||||| || || |||||||| Sbjct 90 CGACAGGTACA---GGTTGCAGGTGAAGCGCGGTTCGGTGCCGCCCTTGCCATCCGACAC 34 Query 27681 CATCACATCGCAGTAGCGCGCGATTTCGTACAG 27713 | | |||||||| | |||| |||||| Sbjct 33 CGGCTGGTCGCAGTACTGGCCGATGCGGTACAG 1 >seq3043706 Length=1055 Score = 134 bits (148), Expect = 4e-27 Identities = 379/572 (66%), Gaps = 14/572 (2%) Strand=Plus/Minus Query 27660 GCCGCCTTTTCCGTCCGACACCATCACATCGCAGTAGCGCGCGATTTCGTACAGCCCCCA 27719 |||||| || || ||||||||| | |||||||| | |||| ||||||| |||| Sbjct 1055 GCCGCCCTTGCCATCCGACACCGGCTGGTCGCAGTACTGGCCGATGCGGTACAGCTCCCA 996 Query 27720 CTTGTCGATCATCGATG-CATCGACGGTCTTTCCGAGCCCGTAGCGCTCGTTCAACAGCA 27778 |||||| | | | | | | | || | ||||| || ||||||| || || ||||| Sbjct 995 CTTGTCCA-CTTGGCCGGCGTTGAGCAAGTGGCCGAGGCCATAGCGCTGGTGCAGCAGCA 937 Query 27779 GGTCGTAGAAGATCCACGCGGGATTGTTCGTCCATGCCGGTTTGAACGTGCCGTCCCACG 27838 |||||||| ||||||| || || |||| ||||| || | |||||| ||||| |||||| Sbjct 936 GGTCGTAGTAGATCCAGGCCGGGTTGTCGGTCCAGGCGGATTTGAAGGTGCCATCCCACA 877 Query 27839 TGCCCGAGTACGTGCGCGTCTCAGGATCGTAGTTCGACGGCACACGCACGATCAGACCTC 27898 ||| |||| || || | || |||||||| |||||| | ||| | || | Sbjct 876 CGCCGCTGTACACACGGGTTTGCGGGTCGTAGTTGCTCGGCACCTTGATGATGCGGCCGC 817 Query 27899 GAACGTGGTACGAGCGCACCGGGACCTGCGAGAACGAGCGC-GCGTCGAACGTCATACCC 27957 | | | | | |||||| | ||| || ||| |||| || ||||| || || Sbjct 816 GCAGTTCGAAGGAGCGCGAC-GGAATTGATTGAAATTGCGCTGCATCGAATTGCAGGCCG 758 Query 27958 ACGAGCGCAGTCATCGGATAGCGCAGCTTGCGGTCGATGATTTCGGT----GATCGCCTC 28013 | | ||| | || |||||||| ||| ||| || | |||||| ||| || | Sbjct 757 ATCAACGCCGAACCTGGGTAGCGCAGTTTGGCGTCAATCACTTCGGTAGAGGAT-TCCAC 699 Query 28014 GATGTTCACCGTGTCGGCGATCAGCGAGCTGTGCGCATTCGGCGTAATGCGCCGCACGCG 28073 | || | || ||||| ||| ||| | |||||||| || || |||||||| Sbjct 698 GGTGGT---GGTATCGGCAATCGCACCACTGGTGGAGTTCGGCGTGATCCGGCGCACGCG 642 Query 28074 CACCAGCCAGCCGGATTTCGCACTCGGCAGCTCGATCCGATGGGAACGCTCGTACAGCGA 28133 || ||||||| ||| || |||||| || | || || || |||||||| | Sbjct 641 CAGGGTCCAGCCGCTTTTTGCCGGCGGCAGGTCCACACGGTGCGAGCGCTCGTATTTGGT 582 Query 28134 CGTCGTCTTGCCG-TCAAAGGCGCCGCGCAGCACTTCCGCGTACGAGCCCCCGTCAACCG 28192 || || |||||| | || | ||||| |||||||| | || | | ||| ||||| | Sbjct 581 GGTGGTTTTGCCGCTGAACGCGGCCGC-CAGCACTTGCACGAAGGCGCCGCCGTCGGTGG 523 Query 28193 ACAGGTCAATCGCATACTCGACTCGGTAGCCG 28224 |||| || ||||| || | || ||||||| Sbjct 522 ACAGATCGATCGCGTATTGCACGGTGTAGCCG 491 >seq3088057 Length=7030 Score = 127 bits (140), Expect = 6e-25 Identities = 239/343 (70%), Gaps = 14/343 (4%) Strand=Plus/Minus Query 27507 GTACACCGGATCTGACGGCATGTCCGCCGATGCGACGAC-AGCTCCCGGCC--CCCAGTA 27563 |||||||||||| |||||| || || | || || || | || | ||| ||||||| Sbjct 5944 GTACACCGGATCGCCCGGCATATCGGC-GTTG--ACCACGATCTGGCTGCCGTCCCAGTA 5888 Query 27564 GGCGATGCCGCGGAACA-CGCTCGCGATGTCCTGCAACACCTTGAACGCGTCGGCCGCCG 27622 ||| | ||| | || | || | || | ||||||| |||| | | || |||||| | Sbjct 5887 GGCCAGACCGTGAAAGATCGAT-GCCAGATCCTGCAGCACCGCGTAGGCCTCGGCCTGCT 5829 Query 27623 ACTGGATCACGCA---GTTGCAGGCGAATCGCGGCTCGACGCCGCCTTTTCCGTCCGACA 27679 || || | | |||||||| || |||||||| | |||||||||||| |||| || Sbjct 5828 TTTG---CAGGTACAGGTTGCAGGTAAAGCGCGGCTCCATGCCGCCTTTTCCATCCGGCA 5772 Query 27680 CCATCACATCGCAGTAGCGCGCGATTTCGTACAGCCCCCACTTGTCGATCATCGATGCAT 27739 ||||| ||||||||| ||||||| || ||| ||| || | ||||| |||| Sbjct 5771 CCATCTGATCGCAGTATTGCGCGATGCGATAAAGCGACCAGCGATCAACCATCGTGGCAT 5712 Query 27740 CGACGGTCTTTCCGAGCCCGTAGCGCTCGTTCAACAGCAGGTCGTAGAAGATCCACGCGG 27799 ||| | | ||||| |||||| || || || |||||| || || | |||||| | Sbjct 5711 CGATGCGATCGCCGAGGCCGTAGTAAGGGTGCAGCACCAGGTCATAAAACACCCACGCAG 5652 Query 27800 GATTGTTCGTCCATGCCGGTTTGAACGTGCCGTCCCACGTGCC 27842 | ||||| || | ||| |||||| ||||||||||| |||| Sbjct 5651 GGTTGTTGGTGTAGGCCTCTTTGAAGGTGCCGTCCCAGATGCC 5609 >seq317828 Length=1905 Score = 80.6 bits (88), Expect = 7e-11 Identities = 155/219 (71%), Gaps = 11/219 (5%) Strand=Plus/Minus Query 26174 CATCGGTAGTCGGCTGCCCCTGCACGCCGGGACCGTCGGCCGGATACCATGGCCCGACGT 26233 |||| | | | | |||||| | ||||||| |||| | ||| |||| ||||||| | Sbjct 270 CATCTGAACTGGCCTGCCCGTTGACGCCGGCACCG---GTCGGCAACCACGGCCCGATAT 214 Query 26234 TTCCGG-ACGTGTCCACGAGGCGCGCCCAGAAGTAGAAC-ACCTGCCCGACCGCAAGCCC 26291 | |||| ||| |||||| ||||| ||||| || | | | || | |||| | ||||||| Sbjct 213 TGCCGGTACG-GTCCACCAGGCGTGCCCAAAAAAACAGCGACGTACCCGCGCCCAAGCCC 155 Query 26292 CTGATACGACGTGGACGCCTGCGGATACGCGAAATCCGAAAACTTCGTGGCGTCGTCGCG 26351 | | || | | | |||||||||||| ||||| ||||| || || | ||| Sbjct 154 ATCAG-CGTCACGTCAGTTTGCGGATACGCGTAATCCCCCAACTTGGTCGC--CAGCGCC 98 Query 26352 -GCTCGGC-GTCCGGCTGTACCAGATCTCGGTGCGCTGC 26388 ||||||| ||| || |||||||||||||| |||||| Sbjct 97 CGCTCGGCCGTCTTGCCATACCAGATCTCGGTACGCTGC 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138157606332076