Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_007497.1
Length=44856
Score E
Sequences producing significant alignments: (Bits) Value
seq333413 149 2e-31
seq3043706 134 4e-27
seq3088057 127 6e-25
seq317828 80.6 7e-11
>seq333413
Length=629
Score = 149 bits (164), Expect = 2e-31
Identities = 307/453 (68%), Gaps = 8/453 (2%)
Strand=Plus/Minus
Query 27265 GTGAGCAAAATCCATTGGCCGACGCGATGTGCCTGCGCCTGCGACGTGCACCCGAACGCA 27324
|| ||||| ||||| ||||| ||| || || |||||||| || ||||| ||| ||
Sbjct 449 GTCAGCAACGCCCATTTGCCGATGCGCTGGGCTTGCGCCTGGGAGGTGCAACCGGTGGCG 390
Query 27325 GTAACCTGCGTCTTAATGACGCCGTAGCGCGCGATCCCGTCTTCGTCCGGCACGTATT-C 27383
| | || || | || ||||||||| ||||| || || |||| ||||||| |
Sbjct 389 CTGATCTCGGTTTGCTGGATGCCGTAGCGGGCGATGCCTTCGGCGTCGTCGACGTATTGC 330
Query 27384 AACGGCTTGCTTGTACTGGTTCGCCGGGTCGTTATAGCTGACGAGCGCGACCGTGTACCG 27443
| | || || ||| | | |||||| || | ||||| || ||||| ||||| ||
Sbjct 329 ACCTTCTGGCG-GTAGAAATCGGTCGGGTCATTCCAACTGACCAGGGCGACGGTGTAGCG 271
Query 27444 CGTCTTACGCTCGCTGCCGACATACCGGAACGAGCCATCGATCACGTTCGCCGCCGTGTA 27503
||||| | | |||| | || |||| ||| |||||||||| || | |||
Sbjct 270 GGTCTTTTTCGCCGAGCCGCCGTAGATGAACTGGCCGCCGATCACGTTGGCGTTGGAGTA 211
Query 27504 CACGTACACCGGATCTGACGGCATGTCCGCCGATGCGACGACAGCTCCCGGCCCCCAGTA 27563
||| ||||| ||| ||||||||||||| || | || | || | ||||| ||
Sbjct 210 GGTGTAGACCGGGTCTTCCGGCATGTCCGCCACGGCCATTACCGAACCTGCGCCCCAATA 151
Query 27564 GGCGATGCCGCGGAACACGCTCGCGATGTCCTGCAACACCTTGAACGCGTCGGC---CGC 27620
|| ||||| ||||| | |||| | ||| |||| ||| || ||||| ||||| | |
Sbjct 150 GGACATGCCACGGAAAGTGGTCGCCAGGTCTTGCAGCACTTTCAACGCATCGGCACGCAC 91
Query 27621 CGACTGGATCACGCAGTTGCAGGCGAATCGCGGCTCGACGCCGCCTTTTCCGTCCGACAC 27680
|||| || || |||||||| ||| ||||| ||| |||||| || || ||||||||
Sbjct 90 CGACAGGTACA---GGTTGCAGGTGAAGCGCGGTTCGGTGCCGCCCTTGCCATCCGACAC 34
Query 27681 CATCACATCGCAGTAGCGCGCGATTTCGTACAG 27713
| | |||||||| | |||| ||||||
Sbjct 33 CGGCTGGTCGCAGTACTGGCCGATGCGGTACAG 1
>seq3043706
Length=1055
Score = 134 bits (148), Expect = 4e-27
Identities = 379/572 (66%), Gaps = 14/572 (2%)
Strand=Plus/Minus
Query 27660 GCCGCCTTTTCCGTCCGACACCATCACATCGCAGTAGCGCGCGATTTCGTACAGCCCCCA 27719
|||||| || || ||||||||| | |||||||| | |||| ||||||| ||||
Sbjct 1055 GCCGCCCTTGCCATCCGACACCGGCTGGTCGCAGTACTGGCCGATGCGGTACAGCTCCCA 996
Query 27720 CTTGTCGATCATCGATG-CATCGACGGTCTTTCCGAGCCCGTAGCGCTCGTTCAACAGCA 27778
|||||| | | | | | | | || | ||||| || ||||||| || || |||||
Sbjct 995 CTTGTCCA-CTTGGCCGGCGTTGAGCAAGTGGCCGAGGCCATAGCGCTGGTGCAGCAGCA 937
Query 27779 GGTCGTAGAAGATCCACGCGGGATTGTTCGTCCATGCCGGTTTGAACGTGCCGTCCCACG 27838
|||||||| ||||||| || || |||| ||||| || | |||||| ||||| ||||||
Sbjct 936 GGTCGTAGTAGATCCAGGCCGGGTTGTCGGTCCAGGCGGATTTGAAGGTGCCATCCCACA 877
Query 27839 TGCCCGAGTACGTGCGCGTCTCAGGATCGTAGTTCGACGGCACACGCACGATCAGACCTC 27898
||| |||| || || | || |||||||| |||||| | ||| | || |
Sbjct 876 CGCCGCTGTACACACGGGTTTGCGGGTCGTAGTTGCTCGGCACCTTGATGATGCGGCCGC 817
Query 27899 GAACGTGGTACGAGCGCACCGGGACCTGCGAGAACGAGCGC-GCGTCGAACGTCATACCC 27957
| | | | | |||||| | ||| || ||| |||| || ||||| || ||
Sbjct 816 GCAGTTCGAAGGAGCGCGAC-GGAATTGATTGAAATTGCGCTGCATCGAATTGCAGGCCG 758
Query 27958 ACGAGCGCAGTCATCGGATAGCGCAGCTTGCGGTCGATGATTTCGGT----GATCGCCTC 28013
| | ||| | || |||||||| ||| ||| || | |||||| ||| || |
Sbjct 757 ATCAACGCCGAACCTGGGTAGCGCAGTTTGGCGTCAATCACTTCGGTAGAGGAT-TCCAC 699
Query 28014 GATGTTCACCGTGTCGGCGATCAGCGAGCTGTGCGCATTCGGCGTAATGCGCCGCACGCG 28073
| || | || ||||| ||| ||| | |||||||| || || ||||||||
Sbjct 698 GGTGGT---GGTATCGGCAATCGCACCACTGGTGGAGTTCGGCGTGATCCGGCGCACGCG 642
Query 28074 CACCAGCCAGCCGGATTTCGCACTCGGCAGCTCGATCCGATGGGAACGCTCGTACAGCGA 28133
|| ||||||| ||| || |||||| || | || || || |||||||| |
Sbjct 641 CAGGGTCCAGCCGCTTTTTGCCGGCGGCAGGTCCACACGGTGCGAGCGCTCGTATTTGGT 582
Query 28134 CGTCGTCTTGCCG-TCAAAGGCGCCGCGCAGCACTTCCGCGTACGAGCCCCCGTCAACCG 28192
|| || |||||| | || | ||||| |||||||| | || | | ||| ||||| |
Sbjct 581 GGTGGTTTTGCCGCTGAACGCGGCCGC-CAGCACTTGCACGAAGGCGCCGCCGTCGGTGG 523
Query 28193 ACAGGTCAATCGCATACTCGACTCGGTAGCCG 28224
|||| || ||||| || | || |||||||
Sbjct 522 ACAGATCGATCGCGTATTGCACGGTGTAGCCG 491
>seq3088057
Length=7030
Score = 127 bits (140), Expect = 6e-25
Identities = 239/343 (70%), Gaps = 14/343 (4%)
Strand=Plus/Minus
Query 27507 GTACACCGGATCTGACGGCATGTCCGCCGATGCGACGAC-AGCTCCCGGCC--CCCAGTA 27563
|||||||||||| |||||| || || | || || || | || | ||| |||||||
Sbjct 5944 GTACACCGGATCGCCCGGCATATCGGC-GTTG--ACCACGATCTGGCTGCCGTCCCAGTA 5888
Query 27564 GGCGATGCCGCGGAACA-CGCTCGCGATGTCCTGCAACACCTTGAACGCGTCGGCCGCCG 27622
||| | ||| | || | || | || | ||||||| |||| | | || |||||| |
Sbjct 5887 GGCCAGACCGTGAAAGATCGAT-GCCAGATCCTGCAGCACCGCGTAGGCCTCGGCCTGCT 5829
Query 27623 ACTGGATCACGCA---GTTGCAGGCGAATCGCGGCTCGACGCCGCCTTTTCCGTCCGACA 27679
|| || | | |||||||| || |||||||| | |||||||||||| |||| ||
Sbjct 5828 TTTG---CAGGTACAGGTTGCAGGTAAAGCGCGGCTCCATGCCGCCTTTTCCATCCGGCA 5772
Query 27680 CCATCACATCGCAGTAGCGCGCGATTTCGTACAGCCCCCACTTGTCGATCATCGATGCAT 27739
||||| ||||||||| ||||||| || ||| ||| || | ||||| ||||
Sbjct 5771 CCATCTGATCGCAGTATTGCGCGATGCGATAAAGCGACCAGCGATCAACCATCGTGGCAT 5712
Query 27740 CGACGGTCTTTCCGAGCCCGTAGCGCTCGTTCAACAGCAGGTCGTAGAAGATCCACGCGG 27799
||| | | ||||| |||||| || || || |||||| || || | |||||| |
Sbjct 5711 CGATGCGATCGCCGAGGCCGTAGTAAGGGTGCAGCACCAGGTCATAAAACACCCACGCAG 5652
Query 27800 GATTGTTCGTCCATGCCGGTTTGAACGTGCCGTCCCACGTGCC 27842
| ||||| || | ||| |||||| ||||||||||| ||||
Sbjct 5651 GGTTGTTGGTGTAGGCCTCTTTGAAGGTGCCGTCCCAGATGCC 5609
>seq317828
Length=1905
Score = 80.6 bits (88), Expect = 7e-11
Identities = 155/219 (71%), Gaps = 11/219 (5%)
Strand=Plus/Minus
Query 26174 CATCGGTAGTCGGCTGCCCCTGCACGCCGGGACCGTCGGCCGGATACCATGGCCCGACGT 26233
|||| | | | | |||||| | ||||||| |||| | ||| |||| ||||||| |
Sbjct 270 CATCTGAACTGGCCTGCCCGTTGACGCCGGCACCG---GTCGGCAACCACGGCCCGATAT 214
Query 26234 TTCCGG-ACGTGTCCACGAGGCGCGCCCAGAAGTAGAAC-ACCTGCCCGACCGCAAGCCC 26291
| |||| ||| |||||| ||||| ||||| || | | | || | |||| | |||||||
Sbjct 213 TGCCGGTACG-GTCCACCAGGCGTGCCCAAAAAAACAGCGACGTACCCGCGCCCAAGCCC 155
Query 26292 CTGATACGACGTGGACGCCTGCGGATACGCGAAATCCGAAAACTTCGTGGCGTCGTCGCG 26351
| | || | | | |||||||||||| ||||| ||||| || || | |||
Sbjct 154 ATCAG-CGTCACGTCAGTTTGCGGATACGCGTAATCCCCCAACTTGGTCGC--CAGCGCC 98
Query 26352 -GCTCGGC-GTCCGGCTGTACCAGATCTCGGTGCGCTGC 26388
||||||| ||| || |||||||||||||| ||||||
Sbjct 97 CGCTCGGCCGTCTTGCCATACCAGATCTCGGTACGCTGC 59
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138157606332076
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |