Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_007710.1
Length=46643
Score E
Sequences producing significant alignments: (Bits) Value
seq331658 113 1e-20
seq3036489 100 8e-17
seq178508 93.3 1e-14
>seq331658
Length=687
Score = 113 bits (124), Expect = 1e-20
Identities = 305/457 (67%), Gaps = 16/457 (4%)
Strand=Plus/Plus
Query 35441 TTGCAGGTGAAGTTGCTCGACCCGCGTTTCGGCGATCTGTGGCCGTTGCCGGCCTATGCC 35500
||||| | ||| | |||||||| || ||||| | | || ||||||||||||||
Sbjct 41 TTGCAAGCCAAGATCCTCGACCCCCGCATCGGCAACGAATTTCCTCTGCCGGCCTATGCC 100
Query 35501 ACCGAAGCCAGTGCAGGCATGGACCTGCGTGCC--GCACTGG--AGGCGCCGATGACGTT 35556
|| | | || ||| |||||||||| ||| || | | || | ||| || ||
Sbjct 101 ACTCCGGGCTCCGCCGGCCTGGACCTGCGCGCCATGCTCAAGCAAGACACCG-TGC--TT 157
Query 35557 GCAGCCGGGCGATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCTGGCCGACCCGCA 35616
| |||||||| | | |||||||| | |||| | ||||| | | | ||||||
Sbjct 158 G-AGCCGGGCCAGACAATCCTGATTCCTACCGGCCTGTCGATCTACGTCGGCGACCCAGG 216
Query 35617 GCTGTGCGCGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGG 35676
||| || |||||||||||||||| || || ||||| ||||||||||| || ||
Sbjct 217 CCTGGCGGCATTGATCCTGCCGCGCTCCGGCCTGGGCCACAAACACGGCATCGTGCTGGG 276
Query 35677 CAAC--GGTACCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGG 35734
|||| ||| ||||| |||||| |||| || ||||| ||| || | ||||
Sbjct 277 CAACCTCGTA--GGCCTGATCGATTCGGACTATCAGGGTGAATTGATGGTGTCGTGCTGG 334
Query 35735 AATCGCGGCCGCGAGGCCTTCACCATCGAGCCGGGCGACCGGATTGCGCAGCTGGTGATC 35794
|| || ||| | || |||| ||||| ||||| || ||||| ||| ||||| |
Sbjct 335 AACCGTGGCAACACCGCATTCAACATCGCTGTCGGCGAACGTATTGCTCAGTTGGTGCTG 394
Query 35795 CTGCCGGTCGTGC--GCGTAGGCTTGCGAGTGGTGGACACTTTCGTCGACAGCGCGCGCG 35852
| ||||| || | ||| | ||| | ||||| | |||| ||| | |||||
Sbjct 395 GTACCGGTGGTACAGGCGCA--CTTCGAACTGGTGCAGGAGTTCGACGAAACTCAGCGCG 452
Query 35853 GCGCGGGTGGATTCGGTCACACCGGCGTGCGCTGACT 35889
|||| ||||| || || || ||||| | ||||||
Sbjct 453 GCGCAGGTGGTTTTGGGCATTCCGGCAGCCACTGACT 489
>seq3036489
Length=965
Score = 100 bits (110), Expect = 8e-17
Identities = 300/456 (66%), Gaps = 14/456 (3%)
Strand=Plus/Plus
Query 35441 TTGCAGGTGAAGTTGCTCGACCCGCGTTTCGGCGATCTGTGGCCGTTGCCGGCCTATGCC 35500
||||| | ||| | |||||||| || |||| | | || | |||||||| |||
Sbjct 136 TTGCAAGCCAAGATCCTCGACCCACGCATCGGAAACGAATTCCCACTTCCGGCCTACGCC 195
Query 35501 ACCGAAGCCAGTGCAGGCATGGACCTGCGTGCCGCACTGGAGGCGCCGATGACGTTGC-- 35558
||| || || ||| |||||||||| ||| || || | || ||| | |
Sbjct 196 ACCCCAGGTTCCGCCGGCCTGGACCTGCGCGCCATGCTCAAGCAG--GAC-ACGGTCCTC 252
Query 35559 -AGCCGGGCGATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCTGGCCGACCCGCAG 35617
||||||| | || ||||| |||| |||| | ||||| | | | |||||||
Sbjct 253 GAGCCGGGGCAGACGATCCTGATCCCCACCGGCCTGTCGATCTACGTCGGCGACCCGGGC 312
Query 35618 CTGTGCGCGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGGC 35677
||| || |||||||||||||||| || || ||||| ||||||||||| || |||
Sbjct 313 CTGGCGGCCCTGATCCTGCCGCGCTCCGGCCTGGGCCACAAACACGGCATCGTGCTGGGC 372
Query 35678 AA--CGGTACCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGGA 35735
|| ||| ||||| ||||| | || |||||||| ||| || | |||||
Sbjct 373 AATCTGGT--GGGCCTGATCGACTCCGACTACCAGGGCGAATTGATGGTGTCGTGCTGGA 430
Query 35736 ATCGCGGCCGCGAGGCCTTCACCATCGAGCCGGGCGACCGGATTGCGCAGCTGGTGATCC 35795
| ||||||| || |||| |||| | ||||| || || || || |||||| |
Sbjct 431 ACCGCGGCCAGACCGCATTCAATATCGCGGTCGGCGAGCGCATCGCCCAACTGGTGCTGG 490
Query 35796 TGCCGGTCGTGC--GCGTAGGCTTGCGAGTGGTGGACACTTTCGTCGACAGCGCGCGCGG 35853
||||||| || | ||| || || | ||||| | |||| ||| | | ||| ||
Sbjct 491 TGCCGGTGGTCCAGGCGCAG--TTCGAACTGGTGCAGGAATTCGACGAAACCCAGCGTGG 548
Query 35854 CGCGGGTGGATTCGGTCACACCGGCGTGCGCTGACT 35889
||| ||||| || || || ||||| | ||||||
Sbjct 549 CGCAGGTGGTTTTGGGCATTCCGGCAGTCACTGACT 584
>seq178508
Length=400
Score = 93.3 bits (102), Expect = 1e-14
Identities = 162/234 (69%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 35576 CTGATTCCCAGCGGCATCGCGATCCATCTGGCCGACCCGCAGCTGTGCGCGGTGATCCTG 35635
||||| || | |||| | |||| | | | ||| ||| ||| ||| ||||||||
Sbjct 324 CTGATCCCTACCGGCCTGTCGATTTACGTTGGCGATCCGGGCCTGGCCGCACTGATCCTG 265
Query 35636 CCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGGCAAC--GGTACCGGCCTCA 35693
|||||||| || || ||||| ||||||||||| || |||||| ||| |||||| |
Sbjct 264 CCGCGCTCCGGCCTGGGCCACAAACACGGCATCGTGCTGGGCAACCTGGT--CGGCCTGA 207
Query 35694 TCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGGAATCGCGGCCGCGAGGCCT 35753
|||| | || |||||||| | | || | |||||| ||||||| ||||
Sbjct 206 TCGACTCCGACTACCAGGGCGAGCTAATGGTGTCGTGCTGGAACCGCGGCCAGACCGCCT 147
Query 35754 TCACCATCGAGCCGGGCGACCGGATTGCGCAGCTGGTGATCCTGCCGGTCGTGC 35807
||| ||| | ||||| || || ||||| |||||| | ||||||| ||||
Sbjct 146 TCAACATTGCTGTTGGCGAGCGTATCGCGCAACTGGTGCTGGTGCCGGTGGTGC 93
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143666277904110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |