Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_007710.1 Length=46643 Score E Sequences producing significant alignments: (Bits) Value seq331658 113 1e-20 seq3036489 100 8e-17 seq178508 93.3 1e-14 >seq331658 Length=687 Score = 113 bits (124), Expect = 1e-20 Identities = 305/457 (67%), Gaps = 16/457 (4%) Strand=Plus/Plus Query 35441 TTGCAGGTGAAGTTGCTCGACCCGCGTTTCGGCGATCTGTGGCCGTTGCCGGCCTATGCC 35500 ||||| | ||| | |||||||| || ||||| | | || |||||||||||||| Sbjct 41 TTGCAAGCCAAGATCCTCGACCCCCGCATCGGCAACGAATTTCCTCTGCCGGCCTATGCC 100 Query 35501 ACCGAAGCCAGTGCAGGCATGGACCTGCGTGCC--GCACTGG--AGGCGCCGATGACGTT 35556 || | | || ||| |||||||||| ||| || | | || | ||| || || Sbjct 101 ACTCCGGGCTCCGCCGGCCTGGACCTGCGCGCCATGCTCAAGCAAGACACCG-TGC--TT 157 Query 35557 GCAGCCGGGCGATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCTGGCCGACCCGCA 35616 | |||||||| | | |||||||| | |||| | ||||| | | | |||||| Sbjct 158 G-AGCCGGGCCAGACAATCCTGATTCCTACCGGCCTGTCGATCTACGTCGGCGACCCAGG 216 Query 35617 GCTGTGCGCGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGG 35676 ||| || |||||||||||||||| || || ||||| ||||||||||| || || Sbjct 217 CCTGGCGGCATTGATCCTGCCGCGCTCCGGCCTGGGCCACAAACACGGCATCGTGCTGGG 276 Query 35677 CAAC--GGTACCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGG 35734 |||| ||| ||||| |||||| |||| || ||||| ||| || | |||| Sbjct 277 CAACCTCGTA--GGCCTGATCGATTCGGACTATCAGGGTGAATTGATGGTGTCGTGCTGG 334 Query 35735 AATCGCGGCCGCGAGGCCTTCACCATCGAGCCGGGCGACCGGATTGCGCAGCTGGTGATC 35794 || || ||| | || |||| ||||| ||||| || ||||| ||| ||||| | Sbjct 335 AACCGTGGCAACACCGCATTCAACATCGCTGTCGGCGAACGTATTGCTCAGTTGGTGCTG 394 Query 35795 CTGCCGGTCGTGC--GCGTAGGCTTGCGAGTGGTGGACACTTTCGTCGACAGCGCGCGCG 35852 | ||||| || | ||| | ||| | ||||| | |||| ||| | ||||| Sbjct 395 GTACCGGTGGTACAGGCGCA--CTTCGAACTGGTGCAGGAGTTCGACGAAACTCAGCGCG 452 Query 35853 GCGCGGGTGGATTCGGTCACACCGGCGTGCGCTGACT 35889 |||| ||||| || || || ||||| | |||||| Sbjct 453 GCGCAGGTGGTTTTGGGCATTCCGGCAGCCACTGACT 489 >seq3036489 Length=965 Score = 100 bits (110), Expect = 8e-17 Identities = 300/456 (66%), Gaps = 14/456 (3%) Strand=Plus/Plus Query 35441 TTGCAGGTGAAGTTGCTCGACCCGCGTTTCGGCGATCTGTGGCCGTTGCCGGCCTATGCC 35500 ||||| | ||| | |||||||| || |||| | | || | |||||||| ||| Sbjct 136 TTGCAAGCCAAGATCCTCGACCCACGCATCGGAAACGAATTCCCACTTCCGGCCTACGCC 195 Query 35501 ACCGAAGCCAGTGCAGGCATGGACCTGCGTGCCGCACTGGAGGCGCCGATGACGTTGC-- 35558 ||| || || ||| |||||||||| ||| || || | || ||| | | Sbjct 196 ACCCCAGGTTCCGCCGGCCTGGACCTGCGCGCCATGCTCAAGCAG--GAC-ACGGTCCTC 252 Query 35559 -AGCCGGGCGATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCTGGCCGACCCGCAG 35617 ||||||| | || ||||| |||| |||| | ||||| | | | ||||||| Sbjct 253 GAGCCGGGGCAGACGATCCTGATCCCCACCGGCCTGTCGATCTACGTCGGCGACCCGGGC 312 Query 35618 CTGTGCGCGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGGC 35677 ||| || |||||||||||||||| || || ||||| ||||||||||| || ||| Sbjct 313 CTGGCGGCCCTGATCCTGCCGCGCTCCGGCCTGGGCCACAAACACGGCATCGTGCTGGGC 372 Query 35678 AA--CGGTACCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGGA 35735 || ||| ||||| ||||| | || |||||||| ||| || | ||||| Sbjct 373 AATCTGGT--GGGCCTGATCGACTCCGACTACCAGGGCGAATTGATGGTGTCGTGCTGGA 430 Query 35736 ATCGCGGCCGCGAGGCCTTCACCATCGAGCCGGGCGACCGGATTGCGCAGCTGGTGATCC 35795 | ||||||| || |||| |||| | ||||| || || || || |||||| | Sbjct 431 ACCGCGGCCAGACCGCATTCAATATCGCGGTCGGCGAGCGCATCGCCCAACTGGTGCTGG 490 Query 35796 TGCCGGTCGTGC--GCGTAGGCTTGCGAGTGGTGGACACTTTCGTCGACAGCGCGCGCGG 35853 ||||||| || | ||| || || | ||||| | |||| ||| | | ||| || Sbjct 491 TGCCGGTGGTCCAGGCGCAG--TTCGAACTGGTGCAGGAATTCGACGAAACCCAGCGTGG 548 Query 35854 CGCGGGTGGATTCGGTCACACCGGCGTGCGCTGACT 35889 ||| ||||| || || || ||||| | |||||| Sbjct 549 CGCAGGTGGTTTTGGGCATTCCGGCAGTCACTGACT 584 >seq178508 Length=400 Score = 93.3 bits (102), Expect = 1e-14 Identities = 162/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 35576 CTGATTCCCAGCGGCATCGCGATCCATCTGGCCGACCCGCAGCTGTGCGCGGTGATCCTG 35635 ||||| || | |||| | |||| | | | ||| ||| ||| ||| |||||||| Sbjct 324 CTGATCCCTACCGGCCTGTCGATTTACGTTGGCGATCCGGGCCTGGCCGCACTGATCCTG 265 Query 35636 CCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGGCAAC--GGTACCGGCCTCA 35693 |||||||| || || ||||| ||||||||||| || |||||| ||| |||||| | Sbjct 264 CCGCGCTCCGGCCTGGGCCACAAACACGGCATCGTGCTGGGCAACCTGGT--CGGCCTGA 207 Query 35694 TCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGGAATCGCGGCCGCGAGGCCT 35753 |||| | || |||||||| | | || | |||||| ||||||| |||| Sbjct 206 TCGACTCCGACTACCAGGGCGAGCTAATGGTGTCGTGCTGGAACCGCGGCCAGACCGCCT 147 Query 35754 TCACCATCGAGCCGGGCGACCGGATTGCGCAGCTGGTGATCCTGCCGGTCGTGC 35807 ||| ||| | ||||| || || ||||| |||||| | ||||||| |||| Sbjct 146 TCAACATTGCTGTTGGCGAGCGTATCGCGCAACTGGTGCTGGTGCCGGTGGTGC 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143666277904110