Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_007805.1
Length=39199
Score E
Sequences producing significant alignments: (Bits) Value
seq277625 138 3e-28
seq361103 136 1e-27
seq2881747 123 6e-24
seq3079689 93.3 1e-14
seq2815396 84.2 5e-12
>seq277625
Length=52836
Score = 138 bits (152), Expect = 3e-28
Identities = 440/664 (66%), Gaps = 34/664 (5%)
Strand=Plus/Minus
Query 35369 TCTACCGCGACGTGATGCCGGCGATCGTTCGCGTCCTGGCGGCCGATGCCATCGACAACA 35428
||||||| |||| ||| |||| ||||| || || ||||| ||||| |||||||||||
Sbjct 37724 TCTACCGAAACGTAATGTCGGCAATCGTCCGTGTACTGGCAGCCGACAACATCGACAACA 37665
Query 35429 CGGCGAAGCAGAGCTGGCAGAGGCTTATCGAC-CGAAAGGTCG--ATGGCGGCTTTCGGG 35485
| || || || ||||||| ||| |||||| || | || | ||||| || |||
Sbjct 37664 GCACTAAACAAAGTTGGCAGAAGCTGATCGACTCGGGACCGCGTAACGGCGGTTTCAGGG 37605
Query 35486 CACTGCTTTCTGCTCAGGACCAGTTCGAGTTCGACTGCATCCTGCACGCCCTACTGCACC 35545
| || || || || | |||||||| || | ||||||| ||| ||||| || || ||||
Sbjct 37604 CGCTACTCTCGGCGCGTGACCAGTTTGATTACGACTGCTGCCTTCACGCACTGCTTCACC 37545
Query 35546 GGGAGCTTTCGCCGGCCGAGTGGGACGTGCTGCACGCTCGCTACTCGAC--GCACTTTGA 35603
||||||| |||| | |||||| | ||| | | ||||| ||| |
Sbjct 37544 GGGAGCTAAGTACGGCTCACTGGGACCTACTGGTTGGGAAGTTTTCGACTAGCAAAGGCA 37485
Query 35604 TCGGCGTGGGCAGGCCAT--CGAGCGAC--TGGCGAGCAGGGTGCATTCGCCTGCGCCTT 35659
| | || || ||| || | || ||| | || | | | || || ||||||||
Sbjct 37484 ACAGGGTTGG--GGCTATATCCAG-GACCATCCCGCGTATCG-GC--TCTCCTGCGCCGG 37431
Query 35660 CTCGGTTTCTGGAGCGTGCTGTAGCGACCTGGGCTATCCCGATGATGAAGGGCAAGGACG 35719
| | || | | || || |||| ||||| | ||||||||||||| | |
Sbjct 37430 CGCTCTTCATCTACAAGGCAACCACGGTCTGGTTCATCCCCAAGATGAAGGGCAAGCAGG 37371
Query 35720 GAAAGCGATCAACCGCTATCCTGATGCTCCCCAAGGAGTGGTACGACATGAACAACTGGG 35779
| |||||||| || | | | ||| ||||| | |||| |||||||| || | |||||
Sbjct 37370 GCAAGCGATCTACTGATGTGGCGATCCTCCCTGAAGAGTTCTACGACATAAATACCTGGG 37311
Query 35780 ATGAGGACGCGCGACCGGACTCAACTCGAAACCGCTGGCGCAGGGATATTCGGAAACAGC 35839
| || || || ||||| ||||| ||| |||||||| | ||||| |||
Sbjct 37310 ACACCGAGGCACGGCCGGATTCAACCCGAGGTCGCTGGCGGCTCGGTATTC----ACAAG 37255
Query 35840 TTGATCGTTTCGA-GGAAGAG---GCGTTGGTGCATGTAACCGAGATCCTTGACCGCGAG 35895
| | | | ||| ||||||| || |||||||||| || ||||| | || || ||
Sbjct 37254 TGCCTGGCTGCGATGGAAGAGGCCGCAGTGGTGCATGTCACAGAGATATTGGATCGTGAA 37195
Query 35896 AAGTTGCTCGAT---GCGGCTTGACGAATGTGATCGACTGAGCGTAACGTAACCA--CAT 35950
||||||| ||| | ||||||| ||| ||| |||||| || | ||| |||
Sbjct 37194 CAGTTGCTGGATGAAGTCGCTTGACACTGGTGGGCGAATGAGCGAAA--TTGCCATGCAT 37137
Query 35951 CTGTTGATCCGTGCGCGCTAAGCCAGATCGACACCGAAACCCGGCCTA-CGCGCCGGGTT 36009
| |||||| |||||| ||| ||| || | ||||||||||| | | ||||||||
Sbjct 37136 CATCTGATCCCTGCGCG-TAACGGGGATTGAAA--GAAACCCGGCCCAGTGAGCCGGGTT 37080
Query 36010 TTTT 36013
||||
Sbjct 37079 TTTT 37076
Score = 109 bits (120), Expect = 1e-19
Identities = 483/747 (65%), Gaps = 32/747 (4%)
Strand=Plus/Minus
Query 33245 GTGGCCGGCGAGCCGGGCAGCGGCAAGACCACGCTTGGCCTTGGGTTCGCCGAGCGGGTG 33304
|| |||||| ||| || ||||| ||||||||||| ||||| | ||||| ||| |
Sbjct 38727 GTCGCCGGCCTGCCCGGGAGCGGTAAGACCACGCTCGGCCTGCAGATCGCCCAGCACATC 38668
Query 33305 GCGTTGGCGTG-CAACGAGCCGGCGCTGGTGTTCAGCCTGGAGATGACCGATGTCGAACT 33363
|| | || | | | | ||| |||||||| |||||||| |||| | || ||
Sbjct 38667 GCCTGCTCGGGTCTTGGCGTTGGCA-TGGTGTTCTCATTGGAGATGCCCGAGGAAGAGCT 38609
Query 33364 GGCCAACCGCGTGCTGTCATCGGTGGGCAGCGTTCCGCTCAAGCACATTGCCGAA---GG 33420
||||||||||| ||| | || |||||||||| || ||| || ||| ||
Sbjct 38608 GGCCAACCGCGCACTGGCTTCCCTGGGCAGCGTAGATCT---GCAGGTTCTCGATAACGG 38552
Query 33421 CCACTCGATGGCCGATTCAGACTGGCCGGGCCTGACTGGGGCGGTGAACAAGCTCAACCA 33480
||| | || || ||||||||| ||||||| ||| || |||||| || | |
Sbjct 38551 CCAACTGCAGGATGAC---GACTGGCCGCGCCTGACCTCGGCAGTCAACAAGATCCTCGA 38495
Query 33481 TGCCCCGCTGATCCTCTGCGACGACGCCTCGCTGAC-GCTCCGGGACATCCGCCAGATCT 33539
| || ||| | || ||||| | | || || | | || | ||| | ||||
Sbjct 38494 TAGGCCTCTGTACGTCAGCGACAAGTCGGGCCTTACCGTTGCGCGT-ATCAGGAGCATCT 38436
Query 33540 GCCGGACAGTGAAGCGTGAGCATGGACTGGGCTTGGTTGCCGTCGACTACATCGGCCTGA 33599
|||| || ||||| | || || || | | |||| | ||||||||||||||||||
Sbjct 38435 GCCGCCAGGTCAAGCGCAAACACGGCCTCGACGTGGTGGTGATCGACTACATCGGCCTGA 38376
Query 33600 TCAAGGGCGAGCAGCGGAACGCG---AGCCGCTACGACGTGGTGACCGAGATCAGCAAGG 33656
|| || || | | || ||| | |||| || || | | | |||| | |
Sbjct 38375 TC--GGATCAGATG-GCAAGGCGTTCAACCGCACCGCCGAGCTCGGCAAGATATCGACCG 38319
Query 33657 GGCTGAAACGAC-TGGCCAAGGAACTCGGCGTACCTGTGGTGGTGCTGGCGCAGCTCAAC 33715
|| | | || | ||||||||||| | || || ||| | || |||| ||||| |||
Sbjct 38318 GGATCGT-CAACATCGCCAAGGAACTGGAGGTGCCAGTGATCCTGTTGGCCCAGCTAAAC 38260
Query 33716 CGTG---GGCCGAAGGCGCGGGGCAACAAGCGTCCGACCAAGAGCGACCTGCGTGACTCC 33772
|||| | | ||| || |||||| || |||| | ||||||||| ||||||
Sbjct 38259 CGTGACTCGACCAAGCGGCCGGGCAAGAA---ACCGATCGCTTCCGACCTGCGCGACTCC 38203
Query 33773 GGGCAGATCGAGGCCGATGCGGACGTGGTGGTGCTGGTCCACAGGGACCAGGAAAGCGAC 33832
|| || |||||||| ||||| || | | || ||||| ||||| ||| |||
Sbjct 38202 GGACAAATCGAGGCTGATGCCCACTGCATCATCCTCGTCCATCGGGACATGGACGACGAG 38143
Query 33833 GCCGGCAAGGCTGGCATTACCGAACTGATCGTCGACAAGAACCGGCACGGGCAGGTGGGT 33892
||| || || | ||||| |||||| | |||| | |||||| || |||||||
Sbjct 38142 CAGGGCCAGAACGGTGTCACCGAGCTGATCATGCCCAAGTGCAGGCACGCGCCGGTGGGT 38083
Query 33893 GTGGCGCA-CGTTCAGCACCAGGGCCAGTACCACCGTTTCGTGGAGATCATCGGCGGCTA 33951
| ||| ||| ||||| |||||| ||| | ||| ||||| | | | | |||
Sbjct 38082 -TCATGCATCGTCCAGCAGCAGGGCAAGTTCGCCCGCTTCGT---CAACTTTGCGGGCCG 38027
Query 33952 TCAGCCCAGCGAGGAAGAAGTCGAAAT 33978
| |||||| | ||||||| || || ||
Sbjct 38026 TGAGCCCACCCAGGAAGAGGTGGAGAT 38000
>seq361103
Length=1272
Score = 136 bits (150), Expect = 1e-27
Identities = 403/613 (66%), Gaps = 29/613 (5%)
Strand=Plus/Plus
Query 20987 CACGTCAGCCGGACGCTGGCCTGTCAAGTACGCGAGGTCCAT--CGTCACCCGCAGATCG 21044
|||||| || || |||||||| ||||| || || |||||||| |||||| |||| ||
Sbjct 621 CACGTCCGCTGGGCGCTGGCCGGTCAAATAGGCCAGGTCCATTGCGTCAC--GCAGCTCC 678
Query 21045 TCCGGCGCTTTCTCGTAGAGCGCCTTCCACACCTCGTCCGTGACGTACACATCGCGCGGC 21104
| ||| | | || | || |||| | ||| || || |||| | ||| ||||||
Sbjct 679 GATGCCGCAACCGCATACACAGCGCTCCAAATCTCTTCGGTTGCGTAAAAATCTCGCGGC 738
Query 21105 TGCTCCTTGTTCTTCTTCACCCCG-CGACAGGG--GTTTTCCATGCTGGTGATGCCCCAC 21161
||| |||||||| ||| ||| || ||||| |||||| ||||| ||||||
Sbjct 739 GCCTCTTTGTTCTTGCGCACGCCGGCGGCAGGGTTGTTTTC------GGTGAGACCCCAC 792
Query 21162 TCCCTGGCCATGTTGTAGGCGAAGGAAAGCAGGGTGATCTCCCTATTCGCTCGAACCTTG 21221
|| | || |||||||| || |||| | || |||| || || || |||||
Sbjct 793 TCGCGCGCGATGTTGTAAATATGTGACAGCAACGATATTTCCCGGTTGGCGCGTACCTTC 852
Query 21222 GCCGTCCTGGCGTCTCGGTACTGAGCGATGGTGCTCGGCGTAATGTCCTCTACCGGGGCT 21281
|| || | | ||||||||||||| |||||| | |||||| | | || | || ||
Sbjct 853 GCTGTTCGGCCGTCTCGGTACTGGGCGATGATCTGCGGCGTCACCGCGTCGATGGGAGCA 912
Query 21282 TCGTCAAAGGC---GCCCAGCAGTT---GGCGGATCATCTTCGAATACTCTTTCTGGGTC 21335
|| ||||| || |||| | | ||| || || | | || |||| |||
Sbjct 913 TCACTGAAGGCCTTGCGCAGCTGCTTCAGGCTGAGCA------AGTTATCGCTCTGCGTC 966
Query 21336 TTCGGCGCCTTCGTCGGAACCACGTCCCGCTCGAACCTG-CGCA-ACAGGTCGCCGACGG 21393
|||||||| || || | | ||||||||| ||| | || | || ||| | || |
Sbjct 967 TTCGGCGCTTTGCCGGGGATGATCTCCCGCTCGTACCGGTCGAACACCTGTCCCAGAAGA 1026
Query 21394 TCCGAGTGGTTGGCGGCACGGCCTTTCTCTCCAGCTTCGCCCACTTCTCCCGAGCCTCAT 21453
| || || |||||| | ||| | || ||||| ||||| | || || ||
Sbjct 1027 GCATTCTGCTT--CGGCACCGGCTTGCAATCGAGCTTTGCCCATTCAGCCTTGGCGATAT 1084
Query 21454 CCAAGTCCGTGCCCAGCGGGATCTCCTTGCGCCTCCCCTCAGCATCCCGCCCGTCGTAGT 21513
||||||| || |||||||| ||| ||| |||| || ||| || ||||||||||
Sbjct 1085 CCAAGTCACCCCCGAGCGGGATTTCCACCCGCTTCCCGTCTTCATTCCTTCCGTCGTAGT 1144
Query 21514 AGTAACCGACCCAGACCTTTCCTGACTTCATCGTCCGGGTACGCTTGATCATCCTGGGTG 21573
||||||| ||||| | || || |||| ||| || ||| ||||||| || |
Sbjct 1145 AGTAACCAACCCACTCTTTACCGCCTTTCAGCGTACGCACCCGCCGAATCATCCGTGGCG 1204
Query 21574 GCAGTCCCCGGTT 21586
|||| ||| |||
Sbjct 1205 GCAGGTCCCTGTT 1217
>seq2881747
Length=304
Score = 123 bits (136), Expect = 6e-24
Identities = 216/310 (70%), Gaps = 16/310 (5%)
Strand=Plus/Minus
Query 3183 ACTTGGTTGCGCGATGGCGAAGGCTTGGCGCAGAAGTTGATGGGACGAGTCCCGAACTAC 3242
|| ||| ||||||||||||| | | || |||||||| |||| || | |||| |
Sbjct 304 ACCTGGCTGCGCGATGGCGAGGCGCTCGCCCAGAAGTTATTGGGCAAGGTGGCCAACTTC 245
Query 3243 ACG--TTTGCCACGTCGGTGCCTTTTGCCCTGGAGCTGCTGGAGCCCGACTACTTGCCCT 3300
| | | ||| || | | ||||| |||||||| ||||||| || |||||| ||||||
Sbjct 244 AAGCATCTGC-ACAAAG-TACCTTTCACCCTGGAGTTGCTGGAACCGGACTACCTGCCCT 187
Query 3301 TCAGCTACAACAACCTGTCGAAAGGCATTGTCCAGGGTATCGAGCGTGACACCTGGCGCC 3360
||||||||| || |||||||| ||| |||||| ||| ||||||| |||||||||
Sbjct 186 GGAGCTACAACGACGAATCGAAAGGGATTTGCCAGGGCATCACGCGTGACGCCTGGCGCC 127
Query 3361 GGAAAAGGGCCTATCACCTGCTCAAGGATCACCCCGGCAACCTGCAGACGCTGGGCGGCA 3420
|| | | | ||||||| ||| ||||||||| | || | |||| ||
Sbjct 126 GGGTCACCGGTTTCAACCTGCTGAAGCGTCACCCCGGTA--GTG----CCTTGGGATTCA 73
Query 3421 GCCTGGCGGTG------AAGCGCGTCGAAGCGGAACGGATCATCCACATCGCCTACCGCA 3474
|| || ||||| ||| || ||||| ||||| | |||||||| |||||||
Sbjct 72 GCATGTCGGTGGATACCAAGTTTGTGCCGGCGGACCGGATGTTGCACATCGCGTACCGCA 13
Query 3475 AGCGGATCGG 3484
||||||| ||
Sbjct 12 AGCGGATTGG 3
>seq3079689
Length=2145
Score = 93.3 bits (102), Expect = 1e-14
Identities = 184/268 (69%), Gaps = 6/268 (2%)
Strand=Plus/Minus
Query 20986 TCACGTCAGCCGGACGCTGGCCTGTCAAGTACGCGAGGTCCATCGTCACCCGCAGATCGT 21045
|||| || || || | |||||| |||| ||| || |||||||| | || || ||
Sbjct 1529 TCACATCGGCAGGTCTCTGGCCGGTCAGGTAGGCCAGGTCCATGGCTTCCTTGAGTTC-- 1472
Query 21046 CCGGC--GCTTTCTCGTAGAGCGCCTTCCACACCTCGTCCGTGACGTACACATCGCGCGG 21103
| ||| || | |||||| || | ||| ||| | | || |||| ||||| ||
Sbjct 1471 CGGGCCCGCCATACCGTAGACGGCGTCCCAAACCACCGCGTTGGCGTAATAGTCGCGTGG 1412
Query 21104 CTGCTCCTTGTTCTTCTTCACCCCGCGACAGGGGTTTTCCATGCTG-GTGATGCCCCACT 21162
| ||||||||||||| | || || |||| || |||||| |||| |||| |||||||
Sbjct 1411 CACCTCCTTGTTCTTCCTGACGCCTTGACAAGGATTTTCC-TGCTCAGTGAGACCCCACT 1353
Query 21163 CCCTGGCCATGTTGTAGGCGAAGGAAAGCAGGGTGATCTCCCTATTCGCTCGAACCTTGG 21222
| | ||||| ||| | || || || |||| ||| |||| || || | ||||||||
Sbjct 1352 CGCGTGCCATATTGAACACGTGCGACAGAAGGGCGATTTCCCGGTTAGCCCTAACCTTGG 1293
Query 21223 CCGTCCTGGCGTCTCGGTACTGAGCGAT 21250
|||| | || || || ||| |||||
Sbjct 1292 CCGTGCGTGCATCGCGATACCCGGCGAT 1265
>seq2815396
Length=244
Score = 84.2 bits (92), Expect = 5e-12
Identities = 152/223 (68%), Gaps = 6/223 (3%)
Strand=Plus/Minus
Query 33668 CTGGCCAAGGAACTCGGCGTACCTGTGGTGGTGCTGGCGCAGCTCAACCGTGGGCCGAAG 33727
|||||||||||| || | || ||||||| |||| |||||||||||||| | | |
Sbjct 243 CTGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCGCAGCTCAACCGTTCCCTGGAA 184
Query 33728 GCGCGGGGCAACAAGCGTCCGACCAAGAGCGACCTGCGTGACTCCGGGCAGATCGAGGCC 33787
||| ||||||||| ||| || ||||||||| || ||||| |||||||
Sbjct 183 CAGCGTCCCAACAAGCGCCCGGTGAACTCCGACCTGCGCGAATCCGGAGCGATCGAGCAG 124
Query 33788 GATGCGGACGTGGTGGTGCTGGTCCACAGGGACCAGGAAAGCGACGCCGGCAAGG----- 33842
||||| |||||| | || | || || ||||| ||| | || ||| | ||
Sbjct 123 GATGCTGACGTGATCATGTTTGTGTACCGGGACGAGGTGTACCACCCCGAAACGGAACAT 64
Query 33843 -CTGGCATTACCGAACTGATCGTCGACAAGAACCGGCACGGGC 33884
|||||| |||| | ||| ||| |||| | ||| ||||||
Sbjct 63 AAAGGCATTGCCGAGATCATCATCGGCAAGCAGCGGAACGGGC 21
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 120719131187702
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