Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_007805.1 Length=39199 Score E Sequences producing significant alignments: (Bits) Value seq277625 138 3e-28 seq361103 136 1e-27 seq2881747 123 6e-24 seq3079689 93.3 1e-14 seq2815396 84.2 5e-12 >seq277625 Length=52836 Score = 138 bits (152), Expect = 3e-28 Identities = 440/664 (66%), Gaps = 34/664 (5%) Strand=Plus/Minus Query 35369 TCTACCGCGACGTGATGCCGGCGATCGTTCGCGTCCTGGCGGCCGATGCCATCGACAACA 35428 ||||||| |||| ||| |||| ||||| || || ||||| ||||| ||||||||||| Sbjct 37724 TCTACCGAAACGTAATGTCGGCAATCGTCCGTGTACTGGCAGCCGACAACATCGACAACA 37665 Query 35429 CGGCGAAGCAGAGCTGGCAGAGGCTTATCGAC-CGAAAGGTCG--ATGGCGGCTTTCGGG 35485 | || || || ||||||| ||| |||||| || | || | ||||| || ||| Sbjct 37664 GCACTAAACAAAGTTGGCAGAAGCTGATCGACTCGGGACCGCGTAACGGCGGTTTCAGGG 37605 Query 35486 CACTGCTTTCTGCTCAGGACCAGTTCGAGTTCGACTGCATCCTGCACGCCCTACTGCACC 35545 | || || || || | |||||||| || | ||||||| ||| ||||| || || |||| Sbjct 37604 CGCTACTCTCGGCGCGTGACCAGTTTGATTACGACTGCTGCCTTCACGCACTGCTTCACC 37545 Query 35546 GGGAGCTTTCGCCGGCCGAGTGGGACGTGCTGCACGCTCGCTACTCGAC--GCACTTTGA 35603 ||||||| |||| | |||||| | ||| | | ||||| ||| | Sbjct 37544 GGGAGCTAAGTACGGCTCACTGGGACCTACTGGTTGGGAAGTTTTCGACTAGCAAAGGCA 37485 Query 35604 TCGGCGTGGGCAGGCCAT--CGAGCGAC--TGGCGAGCAGGGTGCATTCGCCTGCGCCTT 35659 | | || || ||| || | || ||| | || | | | || || |||||||| Sbjct 37484 ACAGGGTTGG--GGCTATATCCAG-GACCATCCCGCGTATCG-GC--TCTCCTGCGCCGG 37431 Query 35660 CTCGGTTTCTGGAGCGTGCTGTAGCGACCTGGGCTATCCCGATGATGAAGGGCAAGGACG 35719 | | || | | || || |||| ||||| | ||||||||||||| | | Sbjct 37430 CGCTCTTCATCTACAAGGCAACCACGGTCTGGTTCATCCCCAAGATGAAGGGCAAGCAGG 37371 Query 35720 GAAAGCGATCAACCGCTATCCTGATGCTCCCCAAGGAGTGGTACGACATGAACAACTGGG 35779 | |||||||| || | | | ||| ||||| | |||| |||||||| || | ||||| Sbjct 37370 GCAAGCGATCTACTGATGTGGCGATCCTCCCTGAAGAGTTCTACGACATAAATACCTGGG 37311 Query 35780 ATGAGGACGCGCGACCGGACTCAACTCGAAACCGCTGGCGCAGGGATATTCGGAAACAGC 35839 | || || || ||||| ||||| ||| |||||||| | ||||| ||| Sbjct 37310 ACACCGAGGCACGGCCGGATTCAACCCGAGGTCGCTGGCGGCTCGGTATTC----ACAAG 37255 Query 35840 TTGATCGTTTCGA-GGAAGAG---GCGTTGGTGCATGTAACCGAGATCCTTGACCGCGAG 35895 | | | | ||| ||||||| || |||||||||| || ||||| | || || || Sbjct 37254 TGCCTGGCTGCGATGGAAGAGGCCGCAGTGGTGCATGTCACAGAGATATTGGATCGTGAA 37195 Query 35896 AAGTTGCTCGAT---GCGGCTTGACGAATGTGATCGACTGAGCGTAACGTAACCA--CAT 35950 ||||||| ||| | ||||||| ||| ||| |||||| || | ||| ||| Sbjct 37194 CAGTTGCTGGATGAAGTCGCTTGACACTGGTGGGCGAATGAGCGAAA--TTGCCATGCAT 37137 Query 35951 CTGTTGATCCGTGCGCGCTAAGCCAGATCGACACCGAAACCCGGCCTA-CGCGCCGGGTT 36009 | |||||| |||||| ||| ||| || | ||||||||||| | | |||||||| Sbjct 37136 CATCTGATCCCTGCGCG-TAACGGGGATTGAAA--GAAACCCGGCCCAGTGAGCCGGGTT 37080 Query 36010 TTTT 36013 |||| Sbjct 37079 TTTT 37076 Score = 109 bits (120), Expect = 1e-19 Identities = 483/747 (65%), Gaps = 32/747 (4%) Strand=Plus/Minus Query 33245 GTGGCCGGCGAGCCGGGCAGCGGCAAGACCACGCTTGGCCTTGGGTTCGCCGAGCGGGTG 33304 || |||||| ||| || ||||| ||||||||||| ||||| | ||||| ||| | Sbjct 38727 GTCGCCGGCCTGCCCGGGAGCGGTAAGACCACGCTCGGCCTGCAGATCGCCCAGCACATC 38668 Query 33305 GCGTTGGCGTG-CAACGAGCCGGCGCTGGTGTTCAGCCTGGAGATGACCGATGTCGAACT 33363 || | || | | | | ||| |||||||| |||||||| |||| | || || Sbjct 38667 GCCTGCTCGGGTCTTGGCGTTGGCA-TGGTGTTCTCATTGGAGATGCCCGAGGAAGAGCT 38609 Query 33364 GGCCAACCGCGTGCTGTCATCGGTGGGCAGCGTTCCGCTCAAGCACATTGCCGAA---GG 33420 ||||||||||| ||| | || |||||||||| || ||| || ||| || Sbjct 38608 GGCCAACCGCGCACTGGCTTCCCTGGGCAGCGTAGATCT---GCAGGTTCTCGATAACGG 38552 Query 33421 CCACTCGATGGCCGATTCAGACTGGCCGGGCCTGACTGGGGCGGTGAACAAGCTCAACCA 33480 ||| | || || ||||||||| ||||||| ||| || |||||| || | | Sbjct 38551 CCAACTGCAGGATGAC---GACTGGCCGCGCCTGACCTCGGCAGTCAACAAGATCCTCGA 38495 Query 33481 TGCCCCGCTGATCCTCTGCGACGACGCCTCGCTGAC-GCTCCGGGACATCCGCCAGATCT 33539 | || ||| | || ||||| | | || || | | || | ||| | |||| Sbjct 38494 TAGGCCTCTGTACGTCAGCGACAAGTCGGGCCTTACCGTTGCGCGT-ATCAGGAGCATCT 38436 Query 33540 GCCGGACAGTGAAGCGTGAGCATGGACTGGGCTTGGTTGCCGTCGACTACATCGGCCTGA 33599 |||| || ||||| | || || || | | |||| | |||||||||||||||||| Sbjct 38435 GCCGCCAGGTCAAGCGCAAACACGGCCTCGACGTGGTGGTGATCGACTACATCGGCCTGA 38376 Query 33600 TCAAGGGCGAGCAGCGGAACGCG---AGCCGCTACGACGTGGTGACCGAGATCAGCAAGG 33656 || || || | | || ||| | |||| || || | | | |||| | | Sbjct 38375 TC--GGATCAGATG-GCAAGGCGTTCAACCGCACCGCCGAGCTCGGCAAGATATCGACCG 38319 Query 33657 GGCTGAAACGAC-TGGCCAAGGAACTCGGCGTACCTGTGGTGGTGCTGGCGCAGCTCAAC 33715 || | | || | ||||||||||| | || || ||| | || |||| ||||| ||| Sbjct 38318 GGATCGT-CAACATCGCCAAGGAACTGGAGGTGCCAGTGATCCTGTTGGCCCAGCTAAAC 38260 Query 33716 CGTG---GGCCGAAGGCGCGGGGCAACAAGCGTCCGACCAAGAGCGACCTGCGTGACTCC 33772 |||| | | ||| || |||||| || |||| | ||||||||| |||||| Sbjct 38259 CGTGACTCGACCAAGCGGCCGGGCAAGAA---ACCGATCGCTTCCGACCTGCGCGACTCC 38203 Query 33773 GGGCAGATCGAGGCCGATGCGGACGTGGTGGTGCTGGTCCACAGGGACCAGGAAAGCGAC 33832 || || |||||||| ||||| || | | || ||||| ||||| ||| ||| Sbjct 38202 GGACAAATCGAGGCTGATGCCCACTGCATCATCCTCGTCCATCGGGACATGGACGACGAG 38143 Query 33833 GCCGGCAAGGCTGGCATTACCGAACTGATCGTCGACAAGAACCGGCACGGGCAGGTGGGT 33892 ||| || || | ||||| |||||| | |||| | |||||| || ||||||| Sbjct 38142 CAGGGCCAGAACGGTGTCACCGAGCTGATCATGCCCAAGTGCAGGCACGCGCCGGTGGGT 38083 Query 33893 GTGGCGCA-CGTTCAGCACCAGGGCCAGTACCACCGTTTCGTGGAGATCATCGGCGGCTA 33951 | ||| ||| ||||| |||||| ||| | ||| ||||| | | | | ||| Sbjct 38082 -TCATGCATCGTCCAGCAGCAGGGCAAGTTCGCCCGCTTCGT---CAACTTTGCGGGCCG 38027 Query 33952 TCAGCCCAGCGAGGAAGAAGTCGAAAT 33978 | |||||| | ||||||| || || || Sbjct 38026 TGAGCCCACCCAGGAAGAGGTGGAGAT 38000 >seq361103 Length=1272 Score = 136 bits (150), Expect = 1e-27 Identities = 403/613 (66%), Gaps = 29/613 (5%) Strand=Plus/Plus Query 20987 CACGTCAGCCGGACGCTGGCCTGTCAAGTACGCGAGGTCCAT--CGTCACCCGCAGATCG 21044 |||||| || || |||||||| ||||| || || |||||||| |||||| |||| || Sbjct 621 CACGTCCGCTGGGCGCTGGCCGGTCAAATAGGCCAGGTCCATTGCGTCAC--GCAGCTCC 678 Query 21045 TCCGGCGCTTTCTCGTAGAGCGCCTTCCACACCTCGTCCGTGACGTACACATCGCGCGGC 21104 | ||| | | || | || |||| | ||| || || |||| | ||| |||||| Sbjct 679 GATGCCGCAACCGCATACACAGCGCTCCAAATCTCTTCGGTTGCGTAAAAATCTCGCGGC 738 Query 21105 TGCTCCTTGTTCTTCTTCACCCCG-CGACAGGG--GTTTTCCATGCTGGTGATGCCCCAC 21161 ||| |||||||| ||| ||| || ||||| |||||| ||||| |||||| Sbjct 739 GCCTCTTTGTTCTTGCGCACGCCGGCGGCAGGGTTGTTTTC------GGTGAGACCCCAC 792 Query 21162 TCCCTGGCCATGTTGTAGGCGAAGGAAAGCAGGGTGATCTCCCTATTCGCTCGAACCTTG 21221 || | || |||||||| || |||| | || |||| || || || ||||| Sbjct 793 TCGCGCGCGATGTTGTAAATATGTGACAGCAACGATATTTCCCGGTTGGCGCGTACCTTC 852 Query 21222 GCCGTCCTGGCGTCTCGGTACTGAGCGATGGTGCTCGGCGTAATGTCCTCTACCGGGGCT 21281 || || | | ||||||||||||| |||||| | |||||| | | || | || || Sbjct 853 GCTGTTCGGCCGTCTCGGTACTGGGCGATGATCTGCGGCGTCACCGCGTCGATGGGAGCA 912 Query 21282 TCGTCAAAGGC---GCCCAGCAGTT---GGCGGATCATCTTCGAATACTCTTTCTGGGTC 21335 || ||||| || |||| | | ||| || || | | || |||| ||| Sbjct 913 TCACTGAAGGCCTTGCGCAGCTGCTTCAGGCTGAGCA------AGTTATCGCTCTGCGTC 966 Query 21336 TTCGGCGCCTTCGTCGGAACCACGTCCCGCTCGAACCTG-CGCA-ACAGGTCGCCGACGG 21393 |||||||| || || | | ||||||||| ||| | || | || ||| | || | Sbjct 967 TTCGGCGCTTTGCCGGGGATGATCTCCCGCTCGTACCGGTCGAACACCTGTCCCAGAAGA 1026 Query 21394 TCCGAGTGGTTGGCGGCACGGCCTTTCTCTCCAGCTTCGCCCACTTCTCCCGAGCCTCAT 21453 | || || |||||| | ||| | || ||||| ||||| | || || || Sbjct 1027 GCATTCTGCTT--CGGCACCGGCTTGCAATCGAGCTTTGCCCATTCAGCCTTGGCGATAT 1084 Query 21454 CCAAGTCCGTGCCCAGCGGGATCTCCTTGCGCCTCCCCTCAGCATCCCGCCCGTCGTAGT 21513 ||||||| || |||||||| ||| ||| |||| || ||| || |||||||||| Sbjct 1085 CCAAGTCACCCCCGAGCGGGATTTCCACCCGCTTCCCGTCTTCATTCCTTCCGTCGTAGT 1144 Query 21514 AGTAACCGACCCAGACCTTTCCTGACTTCATCGTCCGGGTACGCTTGATCATCCTGGGTG 21573 ||||||| ||||| | || || |||| ||| || ||| ||||||| || | Sbjct 1145 AGTAACCAACCCACTCTTTACCGCCTTTCAGCGTACGCACCCGCCGAATCATCCGTGGCG 1204 Query 21574 GCAGTCCCCGGTT 21586 |||| ||| ||| Sbjct 1205 GCAGGTCCCTGTT 1217 >seq2881747 Length=304 Score = 123 bits (136), Expect = 6e-24 Identities = 216/310 (70%), Gaps = 16/310 (5%) Strand=Plus/Minus Query 3183 ACTTGGTTGCGCGATGGCGAAGGCTTGGCGCAGAAGTTGATGGGACGAGTCCCGAACTAC 3242 || ||| ||||||||||||| | | || |||||||| |||| || | |||| | Sbjct 304 ACCTGGCTGCGCGATGGCGAGGCGCTCGCCCAGAAGTTATTGGGCAAGGTGGCCAACTTC 245 Query 3243 ACG--TTTGCCACGTCGGTGCCTTTTGCCCTGGAGCTGCTGGAGCCCGACTACTTGCCCT 3300 | | | ||| || | | ||||| |||||||| ||||||| || |||||| |||||| Sbjct 244 AAGCATCTGC-ACAAAG-TACCTTTCACCCTGGAGTTGCTGGAACCGGACTACCTGCCCT 187 Query 3301 TCAGCTACAACAACCTGTCGAAAGGCATTGTCCAGGGTATCGAGCGTGACACCTGGCGCC 3360 ||||||||| || |||||||| ||| |||||| ||| ||||||| ||||||||| Sbjct 186 GGAGCTACAACGACGAATCGAAAGGGATTTGCCAGGGCATCACGCGTGACGCCTGGCGCC 127 Query 3361 GGAAAAGGGCCTATCACCTGCTCAAGGATCACCCCGGCAACCTGCAGACGCTGGGCGGCA 3420 || | | | ||||||| ||| ||||||||| | || | |||| || Sbjct 126 GGGTCACCGGTTTCAACCTGCTGAAGCGTCACCCCGGTA--GTG----CCTTGGGATTCA 73 Query 3421 GCCTGGCGGTG------AAGCGCGTCGAAGCGGAACGGATCATCCACATCGCCTACCGCA 3474 || || ||||| ||| || ||||| ||||| | |||||||| ||||||| Sbjct 72 GCATGTCGGTGGATACCAAGTTTGTGCCGGCGGACCGGATGTTGCACATCGCGTACCGCA 13 Query 3475 AGCGGATCGG 3484 ||||||| || Sbjct 12 AGCGGATTGG 3 >seq3079689 Length=2145 Score = 93.3 bits (102), Expect = 1e-14 Identities = 184/268 (69%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 20986 TCACGTCAGCCGGACGCTGGCCTGTCAAGTACGCGAGGTCCATCGTCACCCGCAGATCGT 21045 |||| || || || | |||||| |||| ||| || |||||||| | || || || Sbjct 1529 TCACATCGGCAGGTCTCTGGCCGGTCAGGTAGGCCAGGTCCATGGCTTCCTTGAGTTC-- 1472 Query 21046 CCGGC--GCTTTCTCGTAGAGCGCCTTCCACACCTCGTCCGTGACGTACACATCGCGCGG 21103 | ||| || | |||||| || | ||| ||| | | || |||| ||||| || Sbjct 1471 CGGGCCCGCCATACCGTAGACGGCGTCCCAAACCACCGCGTTGGCGTAATAGTCGCGTGG 1412 Query 21104 CTGCTCCTTGTTCTTCTTCACCCCGCGACAGGGGTTTTCCATGCTG-GTGATGCCCCACT 21162 | ||||||||||||| | || || |||| || |||||| |||| |||| ||||||| Sbjct 1411 CACCTCCTTGTTCTTCCTGACGCCTTGACAAGGATTTTCC-TGCTCAGTGAGACCCCACT 1353 Query 21163 CCCTGGCCATGTTGTAGGCGAAGGAAAGCAGGGTGATCTCCCTATTCGCTCGAACCTTGG 21222 | | ||||| ||| | || || || |||| ||| |||| || || | |||||||| Sbjct 1352 CGCGTGCCATATTGAACACGTGCGACAGAAGGGCGATTTCCCGGTTAGCCCTAACCTTGG 1293 Query 21223 CCGTCCTGGCGTCTCGGTACTGAGCGAT 21250 |||| | || || || ||| ||||| Sbjct 1292 CCGTGCGTGCATCGCGATACCCGGCGAT 1265 >seq2815396 Length=244 Score = 84.2 bits (92), Expect = 5e-12 Identities = 152/223 (68%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 33668 CTGGCCAAGGAACTCGGCGTACCTGTGGTGGTGCTGGCGCAGCTCAACCGTGGGCCGAAG 33727 |||||||||||| || | || ||||||| |||| |||||||||||||| | | | Sbjct 243 CTGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCGCAGCTCAACCGTTCCCTGGAA 184 Query 33728 GCGCGGGGCAACAAGCGTCCGACCAAGAGCGACCTGCGTGACTCCGGGCAGATCGAGGCC 33787 ||| ||||||||| ||| || ||||||||| || ||||| ||||||| Sbjct 183 CAGCGTCCCAACAAGCGCCCGGTGAACTCCGACCTGCGCGAATCCGGAGCGATCGAGCAG 124 Query 33788 GATGCGGACGTGGTGGTGCTGGTCCACAGGGACCAGGAAAGCGACGCCGGCAAGG----- 33842 ||||| |||||| | || | || || ||||| ||| | || ||| | || Sbjct 123 GATGCTGACGTGATCATGTTTGTGTACCGGGACGAGGTGTACCACCCCGAAACGGAACAT 64 Query 33843 -CTGGCATTACCGAACTGATCGTCGACAAGAACCGGCACGGGC 33884 |||||| |||| | ||| ||| |||| | ||| |||||| Sbjct 63 AAAGGCATTGCCGAGATCATCATCGGCAAGCAGCGGAACGGGC 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120719131187702