Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq358119 113 3e-20
seq155098 102 5e-17
seq1967911 98.7 6e-16
seq323673 98.7 6e-16
seq103144 98.7 6e-16
seq83505 98.7 6e-16
seq18103 98.7 6e-16
seq1738563 95.1 8e-15
seq295917 95.1 8e-15
seq203554 95.1 8e-15
seq1856707 93.3 3e-14
seq185925 93.3 3e-14
seq22191 93.3 3e-14
seq1264378 89.7 3e-13
seq375348 87.8 1e-12
seq290555 86.0 4e-12
seq132200 84.2 1e-11
>seq358119
Length=644
Score = 113 bits (124), Expect = 3e-20
Identities = 82/95 (86%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||| ||||||| |||||||| || || || ||||||||
Sbjct 339 AAGCCCGTTCCCTTGGCTGTGATTTCGCTGGATAGTAGGTACGGACAGTGGGAATCTCGT 398
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||| ||
Sbjct 399 TCATCCATTCATGCGCGTCACTAATTAGATGAGGA 433
>seq155098
Length=7669
Score = 102 bits (112), Expect = 5e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| |||||||||||| |||| ||||||||| |||||| ||
Sbjct 7225 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGTTCATC 7284
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||||| || || ||| || || | || | ||||| || ||
Sbjct 7285 TTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCCTTATC 7344
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | | ||||| ||| || || | || || ||
Sbjct 7345 CTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 7404
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| ||||||| ||| ||||| || |||||||| ||
Sbjct 7405 CTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 7440
>seq1967911
Length=127
Score = 98.7 bits (108), Expect = 6e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 27 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGCACTTGTTGACTATCGGTCTCGT 86
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 87 GCCGGTATTTAGCCTTA 103
>seq323673
Length=3831
Score = 98.7 bits (108), Expect = 6e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||| ||||||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct 1007 CTCTTTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACCATCGGTCTCGT 948
Query 20007 GGTAATATTTAGCCTTA 20023
| | ||||||||||||
Sbjct 947 GCTGGTATTTAGCCTTA 931
>seq103144
Length=1186
Score = 98.7 bits (108), Expect = 6e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||| |||||||||||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct 442 CTCTCCCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCCGTCTCGT 383
Query 20007 GGTAATATTTAGCCTTA 20023
| | ||||||||||||
Sbjct 382 GCCAGTATTTAGCCTTA 366
>seq83505
Length=405
Score = 98.7 bits (108), Expect = 6e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||
Sbjct 308 CTCTCTCTTCAAAGTTCTTATCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 367
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 368 GCCGGTATTTAGCCTTA 384
>seq18103
Length=1248
Score = 98.7 bits (108), Expect = 6e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| | |||||||||| |||| |||||||
Sbjct 858 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATTGGTCTCGT 917
Query 20007 GGTAATATTTAGCCTTA 20023
| | ||||||||||||
Sbjct 918 GCTGGTATTTAGCCTTA 934
>seq1738563
Length=127
Score = 95.1 bits (104), Expect = 8e-15
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
Sbjct 1 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGTGC 60
Query 20009 TAATATTTAGCCTTA 20023
|||||||||||
Sbjct 61 CGGGATTTAGCCTTA 75
>seq295917
Length=364
Score = 95.1 bits (104), Expect = 8e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 179 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACTGTACTTGTTGACTATCGGTCTCCT 238
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 239 GCCGGTATTTAGCCTTA 255
>seq203554
Length=2078
Score = 95.1 bits (104), Expect = 8e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||||| |||||||||||||||||| | |||||||||| ||||||||||||
Sbjct 632 CTCTCTCTTCAAAATTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCGGTCTCGT 691
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 692 GCCGGTATTTAGCCTTA 708
>seq1856707
Length=127
Score = 93.3 bits (102), Expect = 3e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 65 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCG 123
>seq185925
Length=7279
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| |||||||||||| ||||| ||||||||| | || | ||
Sbjct 304 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATC 363
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||| | || | | ||| || || | || | ||||| || ||
Sbjct 364 TTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 423
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | | ||||| ||| || || | || || ||
Sbjct 424 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAGTGATGGT 483
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| ||||||| ||| |||| ||| |||||||| ||
Sbjct 484 CTTCCCCGTCAGGGTCTTCATGAAAATCTGCATCTT 519
>seq22191
Length=678
Score = 93.3 bits (102), Expect = 3e-14
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTC-TCG 20005
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||
Sbjct 91 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTTCA 150
Query 20006 CGGTAATATTTAGCCTTA 20023
| | ||||||||| ||
Sbjct 151 TGCTGGTATTTAGCCGTA 168
>seq1264378
Length=120
Score = 89.7 bits (98), Expect = 3e-13
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 63 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCG 7
>seq375348
Length=31413
Score = 87.8 bits (96), Expect = 1e-12
Identities = 75/93 (81%), Gaps = 5/93 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| |||| |||||||||||||| | |||||||| ||| | || |||||| |
Sbjct 9385 AAGCCCATTCCATTGGCTGTGGTTTCCATGGATAGTAGGTAGAGACAGTGGGAATCTCTT 9444
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
| |||| |||||| | |||||||||||||||||
Sbjct 9445 TGATCCATTCATGAGAGTCACTAATTAGATGAC 9477
>seq290555
Length=1211
Score = 86.0 bits (94), Expect = 4e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||| ||||||||||||||||||||||||||| | |||||||||| |||||||||| |
Sbjct 446 CTCTTTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCGGTCTTGT 387
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||| |||
Sbjct 386 GCCGGTATTTAGCTTTA 370
>seq132200
Length=13726
Score = 84.2 bits (92), Expect = 1e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 19955 TCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATAT 20014
|||||||||||||||||||||||| |||||||||||| ||| ||||||| | | |||
Sbjct 8310 TCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTACTGGTCTCGTGCTGGTAT 8369
Query 20015 TTAGCCTTA 20023
|||||||||
Sbjct 8370 TTAGCCTTA 8378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322339376139641
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |