Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq358119 113 3e-20 seq155098 102 5e-17 seq1967911 98.7 6e-16 seq323673 98.7 6e-16 seq103144 98.7 6e-16 seq83505 98.7 6e-16 seq18103 98.7 6e-16 seq1738563 95.1 8e-15 seq295917 95.1 8e-15 seq203554 95.1 8e-15 seq1856707 93.3 3e-14 seq185925 93.3 3e-14 seq22191 93.3 3e-14 seq1264378 89.7 3e-13 seq375348 87.8 1e-12 seq290555 86.0 4e-12 seq132200 84.2 1e-11 >seq358119 Length=644 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| ||||||| |||||||| || || || |||||||| Sbjct 339 AAGCCCGTTCCCTTGGCTGTGATTTCGCTGGATAGTAGGTACGGACAGTGGGAATCTCGT 398 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||||||||||||||| || Sbjct 399 TCATCCATTCATGCGCGTCACTAATTAGATGAGGA 433 >seq155098 Length=7669 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| |||| ||||||||| |||||| || Sbjct 7225 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGTTCATC 7284 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || ||| || || | || | ||||| || || Sbjct 7285 TTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCCTTATC 7344 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| ||| || || | || || || Sbjct 7345 CTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 7404 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||||| ||| ||||| || |||||||| || Sbjct 7405 CTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 7440 >seq1967911 Length=127 Score = 98.7 bits (108), Expect = 6e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| Sbjct 27 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGCACTTGTTGACTATCGGTCTCGT 86 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 87 GCCGGTATTTAGCCTTA 103 >seq323673 Length=3831 Score = 98.7 bits (108), Expect = 6e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| ||||||||||||||||||||||||||| |||||||||||| | |||||||||| Sbjct 1007 CTCTTTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACCATCGGTCTCGT 948 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 947 GCTGGTATTTAGCCTTA 931 >seq103144 Length=1186 Score = 98.7 bits (108), Expect = 6e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||| |||||||||||||||||||||||||| |||||||||||| ||||| |||||| Sbjct 442 CTCTCCCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCCGTCTCGT 383 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 382 GCCAGTATTTAGCCTTA 366 >seq83505 Length=405 Score = 98.7 bits (108), Expect = 6e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||| Sbjct 308 CTCTCTCTTCAAAGTTCTTATCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 367 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 368 GCCGGTATTTAGCCTTA 384 >seq18103 Length=1248 Score = 98.7 bits (108), Expect = 6e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||| ||||||| Sbjct 858 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATTGGTCTCGT 917 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 918 GCTGGTATTTAGCCTTA 934 >seq1738563 Length=127 Score = 95.1 bits (104), Expect = 8e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| | Sbjct 1 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGTGC 60 Query 20009 TAATATTTAGCCTTA 20023 ||||||||||| Sbjct 61 CGGGATTTAGCCTTA 75 >seq295917 Length=364 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| Sbjct 179 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACTGTACTTGTTGACTATCGGTCTCCT 238 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 239 GCCGGTATTTAGCCTTA 255 >seq203554 Length=2078 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||| |||||||||||||||||| | |||||||||| |||||||||||| Sbjct 632 CTCTCTCTTCAAAATTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCGGTCTCGT 691 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 692 GCCGGTATTTAGCCTTA 708 >seq1856707 Length=127 Score = 93.3 bits (102), Expect = 3e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 65 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCG 123 >seq185925 Length=7279 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| | || | || Sbjct 304 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATC 363 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||| | || | | ||| || || | || | ||||| || || Sbjct 364 TTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 423 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| ||| || || | || || || Sbjct 424 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAGTGATGGT 483 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||||| ||| |||| ||| |||||||| || Sbjct 484 CTTCCCCGTCAGGGTCTTCATGAAAATCTGCATCTT 519 >seq22191 Length=678 Score = 93.3 bits (102), Expect = 3e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTC-TCG 20005 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||| || Sbjct 91 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTTCA 150 Query 20006 CGGTAATATTTAGCCTTA 20023 | | ||||||||| || Sbjct 151 TGCTGGTATTTAGCCGTA 168 >seq1264378 Length=120 Score = 89.7 bits (98), Expect = 3e-13 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 63 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCG 7 >seq375348 Length=31413 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||| |||||||||||||| | |||||||| ||| | || |||||| | Sbjct 9385 AAGCCCATTCCATTGGCTGTGGTTTCCATGGATAGTAGGTAGAGACAGTGGGAATCTCTT 9444 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||| | ||||||||||||||||| Sbjct 9445 TGATCCATTCATGAGAGTCACTAATTAGATGAC 9477 >seq290555 Length=1211 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| ||||||||||||||||||||||||||| | |||||||||| |||||||||| | Sbjct 446 CTCTTTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCGGTCTTGT 387 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||| ||| Sbjct 386 GCCGGTATTTAGCTTTA 370 >seq132200 Length=13726 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 19955 TCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATAT 20014 |||||||||||||||||||||||| |||||||||||| ||| ||||||| | | ||| Sbjct 8310 TCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTACTGGTCTCGTGCTGGTAT 8369 Query 20015 TTAGCCTTA 20023 ||||||||| Sbjct 8370 TTAGCCTTA 8378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322339376139641