Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_008201.1 Length=34525 Score E Sequences producing significant alignments: (Bits) Value seq3088503 131 4e-26 >seq3088503 Length=21467 Score = 131 bits (144), Expect = 4e-26 Identities = 379/579 (65%), Gaps = 11/579 (2%) Strand=Plus/Minus Query 2378 TAGGCGGAATGGGTAATGCTCGAAGGGGTAGAAAAATAAGTAATCCGATATTGTTTTTGG 2437 ||||| ||||| ||||| || || || || || || || | || | | || || Sbjct 10648 TAGGCCTCATGGGCCATGCTGGACGGCGTCGAGAAGTAGGTTTTGCGCCACTTCTTGTGC 10589 Query 2438 CTCGCCATACCCGCTGCCACTTTGCGGATTTCCTCAAAGCGGTTTACCCAAAAGATTTCA 2497 | ||||| |||| || || ||| | ||||||||| | ||| |||| ||| Sbjct 10588 ATGGCCATGCCCGAAGCGACCTTGTTCAGTTCCTCAAACTTGAACGTCCAGAAGAATTCG 10529 Query 2498 TCAAAATAGAGATTGCCGTGGTAAGACTGTGCCGTTTTCGAGTTTGTACCCAAGAAAATT 2557 || || |||| |||||||||||| ||| || || || || ||||| | ||||| Sbjct 10528 TCGAAGTAGAAATTGCCGTGGTAGCCCTGGGCGGTACGCGCATTGGTACCGAGGAAAAAC 10469 Query 2558 AGTTGAGACTCGTTCGGCAAGGTAATGGTTTCGCCTTTTAGCTCCACATCGGCAACCCGT 2617 || | | |||| ||||| |||| || || | ||||| ||| || |||| Sbjct 10468 AGCTCGGCGCCGTTGGGCAATACGATGGGATCCCCCGTCAGCTCGACACCGATAACCTCA 10409 Query 2618 TTGGCGTATGCCACAATATAGGCTCTAAATTGCAATGCCTGTTTTTTCGAGGCGGAAATA 2677 ||| ||||| || || | | ||| | | || || |||||||| ||||| | Sbjct 10408 CGGGCAAATGCCTGGATGTACCCGCGAAACAGATAGGCTTGGTTTTTCGATGCGGACAGG 10349 Query 2678 AAAATCTGATTTCTACCGGTTACTAACGCATCAACTAACGCCTCGTGAGCAAAATAATAA 2737 || |||||||| | |||||| | | |||||||| ||||||||| | ||||| ||||| Sbjct 10348 AAGATCTGATTGCGCCCGGTTTCCAGCGCATCAAGAAACGCCTCGCGGGCAAAGTAATAG 10289 Query 2738 GTCGCTCCAATTTGACGACTTTTAAGAATATTGCGGATTCGATGAGTCAGCCCAGCTTCG 2797 ||||| || || || || ||||| || || ||| | || ||| | ||||| | Sbjct 10288 GTCGCGCCGATCTGCCGGCTTTTGAGGATGACGCGAGTCCGTTGATT---GCCAGCCCGG 10232 Query 2798 TGCCATTTTTTCTGATAATGGAACATTCCGTCTAAAAAGCCGTTTATCAACAGTTCGGCT 2857 | ||| | |||||| || | ||| ||||| | ||| | | |||||| ||| Sbjct 10231 TACCAGTCTTTCTGGTAGTCGAAACAGCCGTCGATAAACGCTTCACGCAACAGCTCGATC 10172 Query 2858 TGCTCTTCG--GAAATGGCATTTTGCTCGGGCTTTT--TGCGGTCGCCTTTATTACGGTT 2913 ||||||||| || || | ||||| || ||||| | ||| || | || || || Sbjct 10171 TGCTCTTCGCTGATATCGTTTTTTG--GGGTCTTTTTCTTCGG--ACCCTCGTTGCGTTT 10116 Query 2914 TTTAATATTTGGGTTGAGGTCGGCTTCATTACCTCCGCC 2952 | || |||||||| |||| ||| |||| ||||| Sbjct 10115 AGCCAGGTTAGGGTTGAGCTCGGTTTCGGTACCGCCGCC 10077 Score = 105 bits (116), Expect = 1e-18 Identities = 259/390 (66%), Gaps = 2/390 (1%) Strand=Plus/Minus Query 567 CCAAAACCGCCGGTGTTATTTGGGATAATCCCCATCAGTTGTGGTGGCACACGGTGAGCA 626 ||||| || || | ||| | || | ||| |||||||| || ||||| | ||| ||| Sbjct 12423 CCAAAGCCCCCCGCGTTCTGCGGCACAATGCCCATCAGCTGCGGTGGAATACGCA-AGCT 12365 Query 627 G-CTAACACATCATCACGGCTCACGTTCTTGATATTAAAAAACTCATCTTTTGCCGACAC 685 | ||| |||||| |||||| | ||| ||||| || ||||| || |||| ||| Sbjct 12364 GGCTAGCACATCGTCACGGGTTTGGTTTTTGATCGAGTTGAATTCATCCTTGGCCGCCAC 12305 Query 686 ATCAGCAATCGGAATAATCTGTATTCCATCTTTCTTGCCGTTTGGTGCGTGGACGAACAA 745 ||| | ||| || | |||||| || || ||||||||| | || | | || ||||| Sbjct 12304 CTCACTGACCGGGATCAGCTGTATCCCGTCCTTCTTGCCGGTGGGCGAATACACAAACAA 12245 Query 746 GTTTTTAAAATTCCCCACCCCTTTTGACTGCTTGAGCTGCTGGCGAATATTTTCAACATC 805 ||| |||||| || ||| || || | |||||| || ||| | | || | ||| Sbjct 12244 GTTGCGAAAATTGCCTGGCCCCTTGGAGTCCTTGAGAGCCTTGCGCAAAGCGTCGATATC 12185 Query 806 TTCTTGTTTTTGTGACGCATCGCTCATATAAAACACAAAGCCGGCGTGAGCTCCATTTAA 865 || | |||| |||||| |||| || | | |||||||||||| ||||| Sbjct 12184 GGTTTCAGTCTGTGCGGCATCGGTCATGTAGAGAATGAAGCCGGCGTGACTGCCATTCTC 12125 Query 866 AAAATACTTACGGCGAAACAGAGTAGCACTCTCATTTAACCACGCAGATTGCAGGGCCGA 925 | ||||| ||||| |||| || || || || | | |||| || |||| ||| Sbjct 12124 GTAGTACTTGCGGCGGAACAACGTGGCCGATTCGTTGAGCAACGCCGACTGCAAGGCACT 12065 Query 926 AAGATATTGTGGCAAGCCGTAAATATCTTG 955 || | | |||||||| ||||| || || Sbjct 12064 AATCCACTCCGGCAAGCCATAAATCTCCTG 12035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106310887803434