Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq28392 156 5e-33 seq58757 134 2e-26 seq141641 113 5e-20 seq85459 111 2e-19 seq2306809 109 7e-19 seq142543 107 2e-18 seq273157 96.9 4e-15 seq20229 96.9 4e-15 >seq28392 Length=738 Score = 156 bits (172), Expect = 5e-33 Identities = 272/396 (69%), Gaps = 0/396 (0%) Strand=Plus/Plus Query 32397 AAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACA 32456 || || ||||| || || || | ||| ||||||||||| || || |||||||| || Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60 Query 32457 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATAT 32516 | ||| || |||| |||| || || | ||||||||| || || || || || Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120 Query 32517 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 32576 ||||||| || ||||| || || || || || || || ||| | || || || Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180 Query 32577 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA 32636 || ||||| || || || | || || | ||||| | | ||| ||| Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTTTG 240 Query 32637 TACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTA 32696 | ||| | ||||| ||||| | || || || || ||||| | |||||| ||||| ||| Sbjct 241 TGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTA 300 Query 32697 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 32756 || | ||| ||||||||||||| || ||||| || || || || || ||||| ||||| Sbjct 301 ATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATC 360 Query 32757 GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 32792 |||||||| || || |||||||| || ||||| ||| Sbjct 361 GACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396 >seq58757 Length=22028 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | Sbjct 18135 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATT 18194 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 18195 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 18254 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 18255 CTGTTTCTTATACCATA 18271 >seq141641 Length=332 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 33045 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 ||||||||||| ||||| || ||||| |||||||| || |||| ||||| |||||| Sbjct 330 AAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAA 271 Query 33105 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 33164 | | | || || || | || | ||| | | || || || || | ||||| || Sbjct 270 TCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCC 211 Query 33165 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 33224 || |||||||||| || ||||| || || |||||||| | ||| || ||||| |||| | Sbjct 210 TCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTTA 151 Query 33225 ATTGGAAAAATAACAAA 33241 || ||||| || ||||| Sbjct 150 ATAGGAAAGATGACAAA 134 >seq85459 Length=10496 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 6860 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 6801 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || || ||||| |||| || ||||||||||| |||||| Sbjct 6800 AATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTCT 6755 Score = 105 bits (116), Expect = 8e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 32696 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 32755 ||| | ||| |||||||||||||| || |||||||| || || || || ||||| ||||| Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884 Query 32756 GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 || ||||| || || |||||||| || ||||| ||||| |||||||| Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 8836 >seq2306809 Length=138 Score = 109 bits (120), Expect = 7e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 32968 TGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTG 33027 ||||||| ||||| ||||| || || ||||| || | || ||||||||||| |||||| Sbjct 1 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTT 60 Query 33028 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087 ||||| || || | ||||||||||| ||||| || ||||| |||||||| || |||| Sbjct 61 GGCAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 120 Query 33088 ATACATGTTTTATAAAAT 33105 ||||| ||||||| Sbjct 121 GCACATGGGAAATAAAAT 138 >seq142543 Length=7870 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | || |||||||| |||||||||||||| || || | || || Sbjct 6769 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 6828 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 6829 AGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 6887 >seq273157 Length=43465 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || ||||||||||| | || || || || || || || || || | Sbjct 35133 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 35074 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 35073 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCA 35014 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 35013 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 34968 >seq20229 Length=11930 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||| ||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 8024 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 8083 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 8084 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 8143 Query 63187 CGGTTCCAAGTATATGGC 63204 ||||||| ||| || || Sbjct 8144 AGGTTCCAGGTAAATAGC 8161 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 1644 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 1703 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||||||||| ||||||| |||||| | || || || | || ||||| || | Sbjct 1704 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 1763 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 1764 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 1823 Query 62610 TCTTATTAGA 62619 ||||| || Sbjct 1824 GTTTATTCGA 1833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609169757475600