Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq300236 100 2e-16 >seq300236 Length=7644 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || ||||||||||| | || |||||| ||||||| | || |||||| | Sbjct 7411 ACAATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCC 7470 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||| || ||| | ||| || || || ||||| || || || || ||| Sbjct 7471 AGTGACACCATTGAGAATGTCAAGGGGAAGATACAAGAAAAAGAGGGCATCCCTCCAGAC 7530 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || ||||| | ||||||| ||||| | || ||| Sbjct 7531 CAGCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTTTCTGACTAC 7590 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||| ||||| || || | || || | || ||||| || Sbjct 7591 AACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 7640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417017002034465