Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq2306809 111 2e-19
seq28392 104 3e-17
seq85459 100 3e-16
>seq2306809
Length=138
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 93404 TTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463
|| ||||| ||||||||||| || |||||||| | ||||| || ||||| ||||||||
Sbjct 3 TTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTTGG 62
Query 93464 GAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAAT 93523
|||| | ||| || | ||||||||| ||||| ||||| ||||||||| |||||||
Sbjct 63 CAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGC 122
Query 93524 ATATGCTTTATAAAAT 93539
| ||| |||||||
Sbjct 123 ACATGGGAAATAAAAT 138
>seq28392
Length=738
Score = 104 bits (114), Expect = 3e-17
Identities = 211/307 (69%), Gaps = 5/307 (2%)
Strand=Plus/Plus
Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977
|||| |||||| || || || || |||||||| ||||||| || ||||| || |
Sbjct 91 ATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCACTTCATCCCAATG 150
Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037
|| ||||| || || || || | ||| || | || || ||| || | |
Sbjct 151 AGCTTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATT 210
Query 93038 ATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096
|||||| ||||||| || || | ||||| || | | | ||| |||| | ||| ||
Sbjct 211 ATTTCTTTTACTCT-CTGTTCCGAAGGTTTGTGCAACAGGTGTTTGAACATAAGGCAGGC 269
Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTG 93155
|||||| || ||||| || |||| || || || | || || || || | || |
Sbjct 270 AAAGTCACAGTGCAAACCCTCATCTC-TGCTAATAAGTTCACTGGAAAACGTGAGGCCAG 328
Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215
| | ||||||||||||||||||||| ||||| || |||||| ||| ||||| || || |
Sbjct 329 GCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGC 388
Query 93216 CTTCCAC 93222
|||||||
Sbjct 389 CTTCCAC 395
>seq85459
Length=10496
Score = 100 bits (110), Expect = 3e-16
Identities = 88/110 (80%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412
|||||| ||||| ||||| || | ||| ||||||||||||||| | || |||||
Sbjct 6862 GAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 6803
Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462
||||||||||| || |||||||||| ||||| || ||||| ||||||||
Sbjct 6802 GCAATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTCTTG 6753
Score = 91.5 bits (100), Expect = 2e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193
|||||| || || | ||| || | |||||||||||||||||||| ||||| || |||
Sbjct 8936 TCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 8877
Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246
||| ||| ||||| || || |||||||| || ||||| || || | ||||||
Sbjct 8876 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACCACACGTTC 8824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 535362416171640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |