Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2306809 111 2e-19 seq28392 104 3e-17 seq85459 100 3e-16 >seq2306809 Length=138 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 93404 TTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463 || ||||| ||||||||||| || |||||||| | ||||| || ||||| |||||||| Sbjct 3 TTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTTGG 62 Query 93464 GAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAAT 93523 |||| | ||| || | ||||||||| ||||| ||||| ||||||||| ||||||| Sbjct 63 CAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGC 122 Query 93524 ATATGCTTTATAAAAT 93539 | ||| ||||||| Sbjct 123 ACATGGGAAATAAAAT 138 >seq28392 Length=738 Score = 104 bits (114), Expect = 3e-17 Identities = 211/307 (69%), Gaps = 5/307 (2%) Strand=Plus/Plus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| |||||| || || || || |||||||| ||||||| || ||||| || | Sbjct 91 ATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCACTTCATCCCAATG 150 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| || || || || | ||| || | || || ||| || | | Sbjct 151 AGCTTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATT 210 Query 93038 ATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 |||||| ||||||| || || | ||||| || | | | ||| |||| | ||| || Sbjct 211 ATTTCTTTTACTCT-CTGTTCCGAAGGTTTGTGCAACAGGTGTTTGAACATAAGGCAGGC 269 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTG 93155 |||||| || ||||| || |||| || || || | || || || || | || | Sbjct 270 AAAGTCACAGTGCAAACCCTCATCTC-TGCTAATAAGTTCACTGGAAAACGTGAGGCCAG 328 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | ||||||||||||||||||||| ||||| || |||||| ||| ||||| || || | Sbjct 329 GCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGC 388 Query 93216 CTTCCAC 93222 ||||||| Sbjct 389 CTTCCAC 395 >seq85459 Length=10496 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| ||||| || | ||| ||||||||||||||| | || ||||| Sbjct 6862 GAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 6803 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||||| ||||| || ||||| |||||||| Sbjct 6802 GCAATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTCTTG 6753 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| || || | ||| || | |||||||||||||||||||| ||||| || ||| Sbjct 8936 TCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 8877 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||| ||||| || || |||||||| || ||||| || || | |||||| Sbjct 8876 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACCACACGTTC 8824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535362416171640