Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_008717.1 Length=36415 Score E Sequences producing significant alignments: (Bits) Value seq3088379 114 3e-21 seq156999 100 6e-17 >seq3088379 Length=10556 Score = 114 bits (126), Expect = 3e-21 Identities = 236/348 (68%), Gaps = 10/348 (3%) Strand=Plus/Plus Query 24430 GTGCAGGCCCGGCTGCTGGAGACGGCCAGCCGCACCTATCGGCCGCTGGCGGAAGCCCAA 24489 || || | ||| || || || || || | || ||||| || || || || ||||| ||| Sbjct 9658 GTTCAAGACCGCCTCCTTGACACAGCGAAGCGTACCTACCGCCCACTCGCTGAAGCACAA 9717 Query 24490 GAGTTGTACATCCGCACCGCCGACAGCCTGAAGTCGTTGCGGTACACCACCGAACAAGCG 24549 || ||||||||||||| | || ||||| || ||| || | |||| |||| || ||| Sbjct 9718 GAACTGTACATCCGCACATCGGATAGCCTTAAATCGATGGGCTACAACACCAGCCAGGCG 9777 Query 24550 CTGGACATCACCGATTCGTTTTC--CTTCTTGCTGGTAACCAACGCCGCGTCGGCGGACC 24607 ||||| | | || | |||| ||| | |||| |||||| |||| || || || Sbjct 9778 CTGGATGTGATGGA--CAGTTTCAGCTTTCTTTTGGTGACCAACTCCGCATCAGCAGA-- 9833 Query 24608 GTGCGGCGAG---CGCCATCGACGCCTACTCGAAATCGATCCAGACCGGCAAGGTCAGCT 24664 ||| || || ||||| |||||||||||| | |||| || |||||||| Sbjct 9834 -AAAGGCCAGTTCGGCAATCGATGCCTACTCGAAAGCACTCCAAACTGGCAAGGTTGAGG 9892 Query 24665 CTGACGCCTGGCAGTCGATCATGGCCGCCATGCCCAGCCTGGTGAACGCCCTGGCAGAGT 24724 |||| | |||||| | ||| | || |||||||| | | || || || | || | | Sbjct 9893 CTGATGGATGGCAGGCCATCCTTGCGGCCATGCCTACTGTTGTCGACACCATTGCCAAAT 9952 Query 24725 CCACCGGCAAGAGCACCGAGGAAATCCGCAAGCTAGGCATCGAGGGCA 24772 ||||||| |||| | || || ||||||| || || | |||||| Sbjct 9953 CCACCGGGAAGACTGCTGAAGAGATCCGCAGCCTTGGAGCCCAGGGCA 10000 >seq156999 Length=6365 Score = 100 bits (110), Expect = 6e-17 Identities = 174/248 (70%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 11033 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTCTGGTCGGCACGCAACAACT 11092 |||| |||||| | || ||| ||||||||||||||||| || || |||| | | Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992 Query 11093 GGCAGGGCCAGCTCCCGCACAACCCGAAGGTCGAGCCGCGTTTCGCCCGTTTCGATACCG 11152 |||| ||||||||| || | | ||| | | ||| ||| |||||||| || ||||| Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052 Query 11153 CACATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTATC-GCA-AGGTCCACGG 11210 | | ||||| ||||||||| ||| ||| ||||||||| ||| | ||| | | || || Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTACCAGCATAAG--CATGG 4110 Query 11211 CCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACACCCG 11270 ||| || || | | | ||| |||||||| || || |||||||||||| Sbjct 4111 GCTGAAGACGGTGAAGGCCATTATCAGCCGCTGGGCACCATCGGTAGAGAACGACACCGC 4170 Query 11271 CGCATATG 11278 ||| |||| Sbjct 4171 CGCCTATG 4178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112137070943414