Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_008717.1
Length=36415
Score E
Sequences producing significant alignments: (Bits) Value
seq3088379 114 3e-21
seq156999 100 6e-17
>seq3088379
Length=10556
Score = 114 bits (126), Expect = 3e-21
Identities = 236/348 (68%), Gaps = 10/348 (3%)
Strand=Plus/Plus
Query 24430 GTGCAGGCCCGGCTGCTGGAGACGGCCAGCCGCACCTATCGGCCGCTGGCGGAAGCCCAA 24489
|| || | ||| || || || || || | || ||||| || || || || ||||| |||
Sbjct 9658 GTTCAAGACCGCCTCCTTGACACAGCGAAGCGTACCTACCGCCCACTCGCTGAAGCACAA 9717
Query 24490 GAGTTGTACATCCGCACCGCCGACAGCCTGAAGTCGTTGCGGTACACCACCGAACAAGCG 24549
|| ||||||||||||| | || ||||| || ||| || | |||| |||| || |||
Sbjct 9718 GAACTGTACATCCGCACATCGGATAGCCTTAAATCGATGGGCTACAACACCAGCCAGGCG 9777
Query 24550 CTGGACATCACCGATTCGTTTTC--CTTCTTGCTGGTAACCAACGCCGCGTCGGCGGACC 24607
||||| | | || | |||| ||| | |||| |||||| |||| || || ||
Sbjct 9778 CTGGATGTGATGGA--CAGTTTCAGCTTTCTTTTGGTGACCAACTCCGCATCAGCAGA-- 9833
Query 24608 GTGCGGCGAG---CGCCATCGACGCCTACTCGAAATCGATCCAGACCGGCAAGGTCAGCT 24664
||| || || ||||| |||||||||||| | |||| || ||||||||
Sbjct 9834 -AAAGGCCAGTTCGGCAATCGATGCCTACTCGAAAGCACTCCAAACTGGCAAGGTTGAGG 9892
Query 24665 CTGACGCCTGGCAGTCGATCATGGCCGCCATGCCCAGCCTGGTGAACGCCCTGGCAGAGT 24724
|||| | |||||| | ||| | || |||||||| | | || || || | || | |
Sbjct 9893 CTGATGGATGGCAGGCCATCCTTGCGGCCATGCCTACTGTTGTCGACACCATTGCCAAAT 9952
Query 24725 CCACCGGCAAGAGCACCGAGGAAATCCGCAAGCTAGGCATCGAGGGCA 24772
||||||| |||| | || || ||||||| || || | ||||||
Sbjct 9953 CCACCGGGAAGACTGCTGAAGAGATCCGCAGCCTTGGAGCCCAGGGCA 10000
>seq156999
Length=6365
Score = 100 bits (110), Expect = 6e-17
Identities = 174/248 (70%), Gaps = 5/248 (2%)
Strand=Plus/Plus
Query 11033 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTCTGGTCGGCACGCAACAACT 11092
|||| |||||| | || ||| ||||||||||||||||| || || |||| | |
Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992
Query 11093 GGCAGGGCCAGCTCCCGCACAACCCGAAGGTCGAGCCGCGTTTCGCCCGTTTCGATACCG 11152
|||| ||||||||| || | | ||| | | ||| ||| |||||||| || |||||
Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052
Query 11153 CACATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTATC-GCA-AGGTCCACGG 11210
| | ||||| ||||||||| ||| ||| ||||||||| ||| | ||| | | || ||
Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTACCAGCATAAG--CATGG 4110
Query 11211 CCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACACCCG 11270
||| || || | | | ||| |||||||| || || ||||||||||||
Sbjct 4111 GCTGAAGACGGTGAAGGCCATTATCAGCCGCTGGGCACCATCGGTAGAGAACGACACCGC 4170
Query 11271 CGCATATG 11278
||| ||||
Sbjct 4171 CGCCTATG 4178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 112137070943414
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |