Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq66256 172 1e-37 seq300236 156 7e-33 seq136426 123 4e-23 seq2409662 120 5e-22 seq2452699 109 1e-18 seq2340502 107 3e-18 seq1774339 95.1 2e-14 seq756647 89.7 9e-13 seq87282 89.7 9e-13 seq1715084 87.8 3e-12 seq317140 86.0 1e-11 seq210793 86.0 1e-11 seq1893300 84.2 4e-11 >seq66256 Length=6617 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || ||||||| |||||||| ||||| || || || | |||||||| Sbjct 1625 ACCAGGTGCAGGGTCTACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1566 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| | ||| || ||||| || || ||||| || |||||||||||||| || || Sbjct 1565 AGCTGCTTGCTGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1506 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| |||||||||||| | ||||| |||| ||||||||| || Sbjct 1505 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTG 1446 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || |||||||| ||||| || |||||| || Sbjct 1445 CCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 1413 >seq300236 Length=7644 Score = 156 bits (172), Expect = 7e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || ||||||||||| |||||||| || || || || || | | Sbjct 7631 AGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGC 7572 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| ||||| || || || | || || ||||| || || ||||| || Sbjct 7571 CCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCCTCT 7512 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || ||||| ||||| ||||||| ||| |||||||| | || || |||| ||| Sbjct 7511 TTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTG 7452 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||| || ||||||||||| || || ||||||||| Sbjct 7451 ATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 7413 >seq136426 Length=23094 Score = 123 bits (136), Expect = 4e-23 Identities = 166/228 (73%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||||||| || ||||||||||| |||||||| || || || Sbjct 21301 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 21242 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT-CGGGTGG 68353 || || ||||||||| | ||| ||||| || || || | || || |||| ||||||| Sbjct 21241 AGGGTGTGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGGTGG 21182 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 | | || ||||| ||||| |||||| | ||||||| |||| | || || Sbjct 21181 --GGGGTGCC--CTCTTGGATCTTGGCCTTGGCATTCTCGATGATGTCACTGGGCTCCAC 21126 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || || | |||||| | ||| |||||||| Sbjct 21125 CTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCATGAAGATCTGCAT 21078 >seq2409662 Length=152 Score = 120 bits (132), Expect = 5e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 19 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 78 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || ||||| || || ||||| || |||||||||||||| || || Sbjct 79 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 138 Query 68373 ATCTTTGCCTTGAC 68386 ||||| ||||| || Sbjct 139 ATCTTGGCCTTCAC 152 >seq2452699 Length=160 Score = 109 bits (120), Expect = 1e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 68324 GGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTT 68383 ||| || ||||| || || ||||| || |||||||||||||| || || ||||| ||||| Sbjct 160 GGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTT 101 Query 68384 GACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGT 68443 || |||||||||||| | || || |||| |||||||| || || || ||||| Sbjct 100 CACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGT 41 Query 68444 CTTGACGAATATCTGCAT 68461 ||| ||||| |||||||| Sbjct 40 CTTCACGAAGATCTGCAT 23 >seq2340502 Length=142 Score = 107 bits (118), Expect = 3e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 68273 TTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATAT 68332 ||| |||||||| || || || || || | ||||||||| | ||| ||||| || || || Sbjct 142 TTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCTGCAAAGAT 83 Query 68333 GAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTC 68392 | || || ||||| ||||| ||||| || |||||||| ||||| |||||||| ||| Sbjct 82 CAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTC 23 Query 68393 GATGGTGTC 68401 ||||||||| Sbjct 22 GATGGTGTC 14 >seq1774339 Length=127 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 || ||||| || |||||||| ||||| |||||||| |||||||||||| | || Sbjct 126 GGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCC 67 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| ||||||||| || || || || ||||| ||||| |||||||| Sbjct 66 ACTTCCAGGGTGATGGTCTTACCGGTCAGCGTCTTCACGAAGATCTGCAT 17 >seq756647 Length=108 Score = 89.7 bits (98), Expect = 9e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || |||||||||||||| || || ||||| ||||| ||| |||||||||||| | Sbjct 2 GGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGC 61 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455 || || |||| ||||||||| || || || |||||||| ||||| || Sbjct 62 TCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGAT 108 >seq87282 Length=9775 Score = 89.7 bits (98), Expect = 9e-13 Identities = 148/213 (69%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| || | ||| || |||| ||| ||||| ||||| | || | || | || || Sbjct 2642 CAACACAAGGTGCAGAGTGGGCTCCTTTTGAATGTTGTG---GGTCAAAGTACATCCGTC 2586 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| | ||||| || || | || |||||||||||||| || ||| ||||| || || Sbjct 2585 TTCCAGTTGCTTGCCAGCATAGATCAGTCTTTGTTGGTCAGGAGGAGCTCCTTCTTTATC 2526 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 || ||||| ||||| || || || || || | | ||||| || | |||||||| Sbjct 2525 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGTGATGGT 2466 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || |||||||| | ||| |||||||| Sbjct 2465 CTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 2433 >seq1715084 Length=127 Score = 87.8 bits (96), Expect = 3e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || || || || | ||||||||| | ||| ||||| || || || | || || ||| Sbjct 126 TAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGG 67 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 || || || ||||| || |||||||| ||||| |||||||| |||||||||||| Sbjct 66 TCCGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC 11 >seq317140 Length=4972 Score = 86.0 bits (94), Expect = 1e-11 Identities = 160/231 (69%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA- 68293 || || || || || | |||| ||| || ||||||||||| ||||| || || || || Sbjct 4452 CCGCCTCGCAGACGAAGCACCATGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 4393 Query 68294 -GAGTGTCCTCCCATCTTCTAACTGCTTC--CCGGCGAATATGAGTCTTTGTTGGTCGGG 68350 |||||| |||| || | |||| | || |||| || || | ||||||| || Sbjct 4392 GGAGTGTAG--CCATGCTCCAGCTGCGTGTGCCCGCGACAATCAGCCGCGGTTGGTCAGG 4335 Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC 68410 || ||||| ||||||||||| || || || ||||| ||| ||||||| ||| Sbjct 4334 CGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAGTGGTGTC-ACTGGGCT 4276 Query 68411 TACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | ||| || || || ||| | |||||||| || | |||||||| Sbjct 4275 CCCCTCAAGGGTAATTGTCTTGCCCATCAGGGTCTTCACAGAGATCTGCAT 4225 >seq210793 Length=6993 Score = 86.0 bits (94), Expect = 1e-11 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || | || ||||||| |||||||| | || ||| || || |||||||| Sbjct 734 ACCAAATGCATGGTCAACTCTTTCTGGATGTTGTGATAGGAAAGAGTGTAGCCATCTTCC 793 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || || | |||||||| || ||||| ||| |||||||||| || || Sbjct 794 AACTGCTTGCCTGCAGAAATGAGTCTCTGCTGGTCACAGGGA-TGCCTTCCTTATCCTGT 852 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 | ||| ||||| || || |||| |||| Sbjct 853 ACCTTGGCCTTCACATTCTTGATGATGTC 881 >seq1893300 Length=127 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 68366 GTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGAT 68425 |||||| ||||| |||||||| |||||||||||| | || || |||| |||||| Sbjct 127 GTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 68 Query 68426 GGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || ||||| ||||| |||||||| Sbjct 67 GGTTTTACCGGTCAGCGTCTTCACGAAGATCTGCAT 32 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 886041888496920