Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq66256 172 1e-37
seq300236 156 7e-33
seq136426 123 4e-23
seq2409662 120 5e-22
seq2452699 109 1e-18
seq2340502 107 3e-18
seq1774339 95.1 2e-14
seq756647 89.7 9e-13
seq87282 89.7 9e-13
seq1715084 87.8 3e-12
seq317140 86.0 1e-11
seq210793 86.0 1e-11
seq1893300 84.2 4e-11
>seq66256
Length=6617
Score = 172 bits (190), Expect = 1e-37
Identities = 166/213 (78%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || || ||||||| |||||||| ||||| || || || | ||||||||
Sbjct 1625 ACCAGGTGCAGGGTCTACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1566
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| | ||| || ||||| || || ||||| || |||||||||||||| || ||
Sbjct 1565 AGCTGCTTGCTGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1506
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
||||| ||||| ||| |||||||||||| | ||||| |||| ||||||||| ||
Sbjct 1505 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTG 1446
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| || |||||||| ||||| || |||||| ||
Sbjct 1445 CCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 1413
>seq300236
Length=7644
Score = 156 bits (172), Expect = 7e-33
Identities = 166/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||| | |||| ||| || ||||||||||| |||||||| || || || || || | |
Sbjct 7631 AGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGC 7572
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | ||| ||||| || || || | || || ||||| || || ||||| ||
Sbjct 7571 CCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCCTCT 7512
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|| ||||| ||||| ||||||| ||| |||||||| | || || |||| |||
Sbjct 7511 TTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTG 7452
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|||||||| || ||||||||||| || || |||||||||
Sbjct 7451 ATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 7413
>seq136426
Length=23094
Score = 123 bits (136), Expect = 4e-23
Identities = 166/228 (73%), Gaps = 5/228 (2%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | | ||||| |||||||| || ||||||||||| |||||||| || || ||
Sbjct 21301 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 21242
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT-CGGGTGG 68353
|| || ||||||||| | ||| ||||| || || || | || || |||| |||||||
Sbjct 21241 AGGGTGTGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGGTGG 21182
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413
| | || ||||| ||||| |||||| | ||||||| |||| | || ||
Sbjct 21181 --GGGGTGCC--CTCTTGGATCTTGGCCTTGGCATTCTCGATGATGTCACTGGGCTCCAC 21126
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| ||||||||| || || || | |||||| | ||| ||||||||
Sbjct 21125 CTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCATGAAGATCTGCAT 21078
>seq2409662
Length=152
Score = 120 bits (132), Expect = 5e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || || |||||||| |||||||| ||||| || || || | ||||||||
Sbjct 19 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 78
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| ||||| || ||||| || || ||||| || |||||||||||||| || ||
Sbjct 79 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 138
Query 68373 ATCTTTGCCTTGAC 68386
||||| ||||| ||
Sbjct 139 ATCTTGGCCTTCAC 152
>seq2452699
Length=160
Score = 109 bits (120), Expect = 1e-18
Identities = 107/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 68324 GGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTT 68383
||| || ||||| || || ||||| || |||||||||||||| || || ||||| |||||
Sbjct 160 GGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTT 101
Query 68384 GACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGT 68443
|| |||||||||||| | || || |||| |||||||| || || || |||||
Sbjct 100 CACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGT 41
Query 68444 CTTGACGAATATCTGCAT 68461
||| ||||| ||||||||
Sbjct 40 CTTCACGAAGATCTGCAT 23
>seq2340502
Length=142
Score = 107 bits (118), Expect = 3e-18
Identities = 101/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 68273 TTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATAT 68332
||| |||||||| || || || || || | ||||||||| | ||| ||||| || || ||
Sbjct 142 TTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCTGCAAAGAT 83
Query 68333 GAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTC 68392
| || || ||||| ||||| ||||| || |||||||| ||||| |||||||| |||
Sbjct 82 CAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTC 23
Query 68393 GATGGTGTC 68401
|||||||||
Sbjct 22 GATGGTGTC 14
>seq1774339
Length=127
Score = 95.1 bits (104), Expect = 2e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411
|| ||||| || |||||||| ||||| |||||||| |||||||||||| | ||
Sbjct 126 GGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCC 67
Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||| ||||||||| || || || || ||||| ||||| ||||||||
Sbjct 66 ACTTCCAGGGTGATGGTCTTACCGGTCAGCGTCTTCACGAAGATCTGCAT 17
>seq756647
Length=108
Score = 89.7 bits (98), Expect = 9e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408
|| |||||||||||||| || || ||||| ||||| ||| |||||||||||| |
Sbjct 2 GGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGC 61
Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455
|| || |||| ||||||||| || || || |||||||| ||||| ||
Sbjct 62 TCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGAT 108
>seq87282
Length=9775
Score = 89.7 bits (98), Expect = 9e-13
Identities = 148/213 (69%), Gaps = 3/213 (1%)
Strand=Plus/Minus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
||| || | ||| || |||| ||| ||||| ||||| | || | || | || ||
Sbjct 2642 CAACACAAGGTGCAGAGTGGGCTCCTTTTGAATGTTGTG---GGTCAAAGTACATCCGTC 2586
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
||| | ||||| || || | || |||||||||||||| || ||| ||||| || ||
Sbjct 2585 TTCCAGTTGCTTGCCAGCATAGATCAGTCTTTGTTGGTCAGGAGGAGCTCCTTCTTTATC 2526
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
|| ||||| ||||| || || || || || | | ||||| || | ||||||||
Sbjct 2525 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGTGATGGT 2466
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || |||||||| | ||| ||||||||
Sbjct 2465 CTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 2433
>seq1715084
Length=127
Score = 87.8 bits (96), Expect = 3e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
|| || || || || | ||||||||| | ||| ||||| || || || | || || |||
Sbjct 126 TAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGG 67
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401
|| || || ||||| || |||||||| ||||| |||||||| ||||||||||||
Sbjct 66 TCCGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC 11
>seq317140
Length=4972
Score = 86.0 bits (94), Expect = 1e-11
Identities = 160/231 (69%), Gaps = 7/231 (3%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA- 68293
|| || || || || | |||| ||| || ||||||||||| ||||| || || || ||
Sbjct 4452 CCGCCTCGCAGACGAAGCACCATGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 4393
Query 68294 -GAGTGTCCTCCCATCTTCTAACTGCTTC--CCGGCGAATATGAGTCTTTGTTGGTCGGG 68350
|||||| |||| || | |||| | || |||| || || | ||||||| ||
Sbjct 4392 GGAGTGTAG--CCATGCTCCAGCTGCGTGTGCCCGCGACAATCAGCCGCGGTTGGTCAGG 4335
Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC 68410
|| ||||| ||||||||||| || || || ||||| ||| ||||||| |||
Sbjct 4334 CGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAGTGGTGTC-ACTGGGCT 4276
Query 68411 TACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| || | ||| || || || ||| | |||||||| || | ||||||||
Sbjct 4275 CCCCTCAAGGGTAATTGTCTTGCCCATCAGGGTCTTCACAGAGATCTGCAT 4225
>seq210793
Length=6993
Score = 86.0 bits (94), Expect = 1e-11
Identities = 109/149 (73%), Gaps = 1/149 (1%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
||||| || | || ||||||| |||||||| | || ||| || || ||||||||
Sbjct 734 ACCAAATGCATGGTCAACTCTTTCTGGATGTTGTGATAGGAAAGAGTGTAGCCATCTTCC 793
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
|||||||| || || | |||||||| || ||||| ||| |||||||||| || ||
Sbjct 794 AACTGCTTGCCTGCAGAAATGAGTCTCTGCTGGTCACAGGGA-TGCCTTCCTTATCCTGT 852
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTC 68401
| ||| ||||| || || |||| ||||
Sbjct 853 ACCTTGGCCTTCACATTCTTGATGATGTC 881
>seq1893300
Length=127
Score = 84.2 bits (92), Expect = 4e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 68366 GTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGAT 68425
|||||| ||||| |||||||| |||||||||||| | || || |||| ||||||
Sbjct 127 GTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 68
Query 68426 GGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || || || ||||| ||||| ||||||||
Sbjct 67 GGTTTTACCGGTCAGCGTCTTCACGAAGATCTGCAT 32
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 886041888496920
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