Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq155098 114 1e-20 seq185925 100 2e-16 seq2709013 89.7 4e-13 seq66256 84.2 2e-11 >seq155098 Length=7669 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| |||| ||| | || || || ||||||||| |||| || Sbjct 7210 ACCACCAAGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGA 7269 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || || ||||| ||||| Sbjct 7270 CAAAGTACGTTCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGG 7329 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || |||||| Sbjct 7330 AATTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGAC 7389 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || ||||| || || |||||||||||||| Sbjct 7390 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 7437 >seq185925 Length=7279 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| |||| ||| | || || || |||||||||||||| || Sbjct 289 ACCACCATGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 348 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||| | |||||| ||||| || ||||| |||| | | || ||||| ||||| Sbjct 349 CAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGG 408 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || || |||||| Sbjct 409 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGAC 468 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || ||||| || || | ||||||||||| Sbjct 469 CTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCATGAAAATCTGCAT 516 >seq2709013 Length=200 Score = 89.7 bits (98), Expect = 4e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| |||| ||| | | || || |||||||||||||| || Sbjct 4 ACCACCACGAAGTCTCAACACTAGATGAAGAGGGGACTCCTTTTGAATGTTGTAGTCAGA 63 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| ||| || | || ||||| ||||| Sbjct 64 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAATGATCAGTCTTTGCTGGTCAGGAGG 123 Query 114275 AATGCCTTCTTT 114286 ||| ||||| || Sbjct 124 AATTCCTTCCTT 135 >seq66256 Length=6617 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 ||||| || ||||||||||| | ||| || |||||| || || || | || || Sbjct 1607 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCTGGCAAAG 1548 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 ||||| | ||| ||||| || ||||||||||| || || ||||| || | | Sbjct 1547 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1488 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||| ||| || || |||| ||| | || ||||||||||| || || || Sbjct 1487 TCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 1428 Query 114372 AAAATCTGCAT 114382 || || ||||| Sbjct 1427 AAGATTTGCAT 1417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404320025337732