Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 98.7 2e-15
seq142543 84.2 4e-11
>seq28392
Length=738
Score = 98.7 bits (108), Expect = 2e-15
Identities = 170/244 (70%), Gaps = 5/244 (2%)
Strand=Plus/Minus
Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGT 42781
|| || ||||||||||| || || | || || || || |||||||||||| | |||
Sbjct 395 GTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGGCTCAAGAAACGAGGA 336
Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841
| |||||| || ||||| || || | ||||| || ||||| || ||||| |||| |
Sbjct 335 CT-GATGCCTGGCCTCACGTTTTCCAGTGAACTTATTAGCAGAGATGAGGGTTTGCACTG 277
Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901
|||||||||||||| ||||| | ||||| |||||| || ||| | || | ||
Sbjct 276 TGACTTTGCCTGCCTTATGTTC---AAACACCTGTTGCACAAACCTTCGGAACAGAGAGT 220
Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961
| || ||| | || || ||| || |||||||||||||| || | |||||
Sbjct 219 AAAAGAAATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCTGCC 160
Query 42962 CGTG 42965
|||
Sbjct 159 TGTG 156
>seq142543
Length=7870
Score = 84.2 bits (92), Expect = 4e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|| || ||| |||| |||||| | || || || || || |||||||| || | || ||
Sbjct 6902 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCCGGATCTTTTGCT 6843
Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814
| || |||||||| ||| | | ||| || |||||||||||||| || || || || ||
Sbjct 6842 GCTATATTCTGGCTAAAGAAAAGAGGACTC-ATGCCCGGACTCACTTTTTCCAATGAGCT 6784
Query 42815 CATCAGCAGGGACGA 42829
||||||||| || ||
Sbjct 6783 CATCAGCAGAGATGA 6769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 907881674913360
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |