Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq3088503 491 1e-134 seq3088488 387 3e-103 seq3063309 80.6 6e-11 >seq3088503 Length=21467 Score = 491 bits (544), Expect = 1e-134 Identities = 1028/1531 (67%), Gaps = 14/1531 (1%) Strand=Plus/Plus Query 2878 CGTCGAGCGCATCGAGGCATCGCTCGAAGTGCGCATGATGGTGTTGATCGCGAAGGAGAA 2937 |||||||||||||| | |||| |||| ||| || || | ||||| ||||| | Sbjct 9938 CGTCGAGCGCATCGGCGGGGCGCTGGAAGCGCGGTTGGTGCAGCTGATCCTCAAGGAAAG 9997 Query 2938 GAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGCCAAGTCGAGCGGCTCGC 2997 ||| ||||| ||||| ||||||||| || ||||| ||||||| | || || | || Sbjct 9998 CAAGAGCGGCGGGGACTTCAAGGAAATTGATCTGCTGCACCGCCAATTGGAACGCCAGGC 10057 Query 2998 GCGCGTGC-GCAAGTACGACGAGACGGGGAAGGAATCGGACCTGAACCCGAAGATTGCGT 3056 | | | || | | | | ||| | ||| | || || ||||| || | || Sbjct 10058 CAGAATTCAGCGCTTTCAGGGCGGCGGT-ACCGAAACCGAGCTCAACCCTAACCTGGCTA 10116 Query 3057 CGCGCAACGCCGGCCCGAAACGCCGTGCGCCCCGTAACGAAATCAGCGACGAACAGCACA 3116 ||||||| || ||||| | || ||||| |||||||| || ||| | Sbjct 10117 AACGCAACGAGGGTCCGAAGAAAAAGACCCCAAAAAACGATATCAGCGAAGAGCAGATCG 10176 Query 3117 AGCGCATCATCGAAGCGTTCCGCGATTCGCTGTT-CGACTATCAGAAAGTCTGGTATCGG 3175 ||| | |||||||| ||| |||||| |||||| ||||||| |||||| ||| Sbjct 10177 AGCTGTTGCGTGAAGCGTTTATCGACG-GCTGTTTCGACTACCAGAAAGACTGGTACCGG 10235 Query 3176 AACGGCGATCAGCGCACGCGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTAC 3235 ||| |||| || || ||| |||||| ||| ||||||||||| ||||| | ||| Sbjct 10236 GCTGGCAATCAACGGACTCGCGTCATCCTCAAAAGCCGGCAGATCGGCGCGACCTATTAC 10295 Query 3236 TTCGCGCGCGAGGCGCTCGTCGACGCGCTCGACACCGACCGCAATCAGATCTTCCTATCG 3295 || || ||||||||| | | || ||||| || |||| ||||||||||||||||| || Sbjct 10296 TTTGCCCGCGAGGCGTTTCTTGATGCGCTGGAAACCGGGCGCAATCAGATCTTCCTGTCC 10355 Query 3296 GCCAGCAAGGCGCAGGCGCACGTCTTCAAGCAATACATC-ACGCAGTTCGCGCGCGATGC 3354 || || || || | | || |||||| | ||| || || || || | Sbjct 10356 GCATCGAAAAACCAAGCCTATCTGTTTCGCGGGTACATCCAGGCATTT-GCCCGTGAGGT 10414 Query 3355 CGCCGACGTCGAGCTCACGGGCGACCCGATCATCTTGCCGAGCGGTGCGACGCTGTACTT 3414 || |||||||| ||||| || || ||| | ||||| | ||| || ||||| || Sbjct 10415 TATCGGTGTCGAGCTGACGGGGGATCCCATCGTATTGCCCAACGGCGCCGAGCTGTTTTT 10474 Query 3415 CCTGGGGACGAACGCGCGTACCGCGCAGTCGTATCACGGCAACTTCTATTTCGACGAATA 3474 ||| || || || ||||||||||| ||| || |||||||| ||||| |||||||||| Sbjct 10475 CCTCGGTACCAATGCGCGTACCGCCCAGGGCTACCACGGCAATTTCTACTTCGACGAATT 10534 Query 3475 CTTTTGG--GTTCCGAAGTTCCGCGAGTTGAACAAGGTTGCGTCGGGCATGGCGATGCAC 3532 ||| ||| |||| ||||| || |||||||||| || ||||||||||| |||||| Sbjct 10535 CTTCTGGACGTTC--AAGTTTGAGGAACTGAACAAGGTCGCTTCGGGCATGGCCATGCAC 10592 Query 3533 AAGCGCTGGCGCAAGACCTACTTCAGCACGCCGTCGAGTGTCACGCACGAGGCGTTCGCG 3592 ||| |||||||| ||||||||| |||||||| || | | || ||||| | | | Sbjct 10593 AAGAAGTGGCGCAAAACCTACTTCTCGACGCCGTCCAGCATGGCCCATGAGGCCTACACC 10652 Query 3593 TTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGATCGAC 3652 ||||||| ||||| || | ||| || | |||| | | || | || ||||| Sbjct 10653 TTCTGGACCGGCGAGCGCTTCAACAAGGGTAAGCCAGCGGCGCAACACACCAAGGTCGAC 10712 Query 3653 ACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATC 3712 ||||| ||||||| | || ||| ||||||||| | ||||||||||||| Sbjct 10713 GTTTCCCACGGGGCGCTCCAACAGGGGCGGTTCTGCGAGGACCGGTTGTGGCGGCAGATC 10772 Query 3713 GTGACCGTGCTCGACGCGATGGCGGGCGGCTGCAACCTGTTCGACATCGACGAGCTGCGC 3772 || ||| | || ||||| | |||||||| | ||||||||||| || ||| |||| Sbjct 10773 GTCACCATCCTGGACGCAGAGCACGGCGGCTGTGATCTGTTCGACATTGAGGAGTTGCGT 10832 Query 3773 CGCGAATACAGCGCCGAGGAATTCGCGAACCTGCTGATGTGCCACTTCATCGACGATTCG 3832 || || |||||| | |||| ||||| |||||| ||||||| | || | |||||| | Sbjct 10833 CGGGAGTACAGCCCTGAGGCGTTCGCCAACCTGTTGATGTGTGAGTTTGTTGACGAT--G 10890 Query 3833 CTGTCGG--TGTTCAAGCTGTCGGACCTGCAACGCTGCATGGTCGACTCGTGGGAGGAAT 3890 | | | | || | || || ||||| |||||||||||||| |||| |||| Sbjct 10891 GAGCCAGCATCTTTCCGTTGGCGTTGCTGCAGAGCTGCATGGTCGACAGTTGGGTTGAAT 10950 Query 3891 GGGCGGACGACTTTTCGCCGCTGCTGCTGCGTCCGTTCGGTCATCGCGAGGTGTGGGTCG 3950 |||| || |||| ||| | |||| ||||||||| | || |||| ||| ||| Sbjct 10951 GGGCAGAGGACTACAAGCCATTCGCCATGCGGCCGTTCGGTGACCGTCAGGTATGGATCG 11010 Query 3951 GCTACGATCCGGCGCTCACGGGCGACTCGGCGGGGCTCGNNNNNNNNNNNNNNNNNNNNN 4010 ||||||| || ||| || || || | | ||||| | Sbjct 11011 GCTACGACCCAGCGGAAACCGGTGATTGCTCCGGGCTGGTGGTGGTTGCGCCGCCGCTGG 11070 Query 4011 NNNNNNNNNNNNCCTTCCGCGTGCTCGAACGTCACCAGTTCCGCGGCAACGACTTTGAGG 4070 |||||||| || || || ||||| ||||| |||| ||||||| || Sbjct 11071 TACCGGGCGGCAAATTCCGCGTCCTGGAGCGGCACCAATTCCGGGGCATGGACTTTGCGG 11130 Query 4071 AACAGGCCGCGGCAATCGAGGCGATCACGCAGCGCTACAACGTCGGCTACATCGCGATCG 4130 ||||| || ||| | || | |||||| || ||| |||| ||| | Sbjct 11131 CCCAGGCGGCATTTATCAAAAACGTCTGCGACCGCTACTGGGTGACCTATATCGGGATTG 11190 Query 4131 ACACCACGGGCATGGGGCAAGGCGTCTACCAGCTCGTGCGCAAGTTCTTCCCGGCCGCCG 4190 | ||| || |||| ||||| ||||| |||||| ||||||||||||| | Sbjct 11191 ATGTCACCGGGCTGGGTAGCGGCGTGGCGCAGCTGGTGCGCCAGTTCTTCCCGGCTGTGA 11250 Query 4191 TCGCGCTGAACTACTCGCCCGAGGTGAAAACCCGCCTCGTGCTCAAGGGCCAGTCCGTCG 4250 | | | | ||| |||||||| || ||||| ||||| ||||| |||| | | ||| Sbjct 11251 CCACCTTCAGCTATTCGCCCGAAGTCAAAACACGCCTGGTGCTGAAGGCCTATGACGTGA 11310 Query 4251 TCCGGAACGGCCGCCTGCAATTCGACGCGGGCTGGACCGATCTGGCGGCGGCGTTCATGG 4310 ||| |||||||| ||| | |||||||| || |||||||| ||||| | || | |||| Sbjct 11311 TCCATAACGGCCGGCTGGAGTTCGACGCCGGGTGGACCGACATGGCGCAGTCGATGATGG 11370 Query 4311 CGATCAAACAGACGATGACGGCGAGCGGCCGCCAGGCGACCTACACCGCCGGCCGTACCG 4370 ||||| ||||| | || || |||| |||||| ||||||||||| || || | || Sbjct 11371 CGATCCGCAAGACGGTCACCGCAGGCGGTCGCCAGTACACCTACACCGCAGGGCGCAACG 11430 Query 4371 AGGAAACCGGCCACGCCGATCTGGCGTGGGC 4401 | | |||||||| ||||| ||||| ||||| Sbjct 11431 ACAACACCGGCCATGCCGACCTGGCCTGGGC 11461 Score = 297 bits (328), Expect = 4e-76 Identities = 513/727 (71%), Gaps = 24/727 (3%) Strand=Plus/Plus Query 721 GCCAGTTCGATGTTTTCGGCCACGCAGCCGCAGCCGAAGTCTTCGACCACGTAGGCGTCG 780 ||||||||||||||||| || | || | || | | |||||| | ||||| ||||| Sbjct 7747 GCCAGTTCGATGTTTTCAGCGAGCGAGGCACATTCCAGGTCTTCAATGACGTATGCGTCA 7806 Query 781 TTCGACGATTCGTAGTTCTCGATGCGGTCGCGTTCCGGCACTTCCTTCAGCG-TGCGCCG 839 || ||| |||||||| ||||||||||| || | |||| | | | || |||| || Sbjct 7807 TTGACCGACTCGTAGTTTTCGATGCGGTCACGCTT-GGCATTGTCGACGACGGTGCGGCG 7865 Query 840 GCGCGCGCCTTCCTGGTAGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCG 899 ||| ||||||||| ||||||||||||| ||| |||||| ||||||| || | |||| Sbjct 7866 GCGGCTGCCTTCCTGCCAGTAGATCGACAGGTTTTCCAGCTTGGTGACCAGCAACCCGCG 7925 Query 900 CTTCGGGAAGAACGGCACGCGCACGGCCGGCAGATTGCCGATGCGCTTCTGGCTCACGAT 959 | ||||||| | |||||||||||||| |||| |||||| | |||||| || || || Sbjct 7926 CGGCGGGAAGTAAGGCACGCGCACGGCTGGCAAATTGCCCAAGCGCTTTTGACTGGTGAC 7985 Query 960 CAGATCGGCCGCGAGCCGCTCGGTCGGCGCCTGCGTC-GCGTTGACGATCGGGAAATACT 1018 | |||||| || ||| || |||||||| | ||| ||||| |||||||||||||| Sbjct 7986 GATATCGGCGGCCAGCATTTCAGTCGGCGCGT-TGTCTTTGTTGATGATCGGGAAATACT 8044 Query 1019 TGTCGTGCAGCAGCTCGCGGCCGCAGATCGCGACGAGGCCCGTGTCTTCCTGGAACCACG 1078 ||||| |||||| | ||| ||||||||| | || || | | |||||||||| |||||| Sbjct 8045 TGTCGGCCAGCAGTTGGCGACCGCAGATCACCACCAGATCAGGGTCTTCCTGGTACCACG 8104 Query 1079 GGTCGATCATCGACGACACGATATCCATCACGAGCGCGTCGAGGTTCTCGTAATC--GCC 1136 | | || | | ||| || | || || ||||||||||| | | || | Sbjct 8105 GCGCAATGAACTCTTCCACCATGCTGAATACCAGGGCGTCGAGGTTGGTGAAGTCTTTAC 8164 Query 1137 CGCCTTGCCGACGAGCACCTTGCCGGCCTGCTTCG-CGCCTTCGTGCAGCACGCGCTGTG 1195 || | |||| | | ||||||| ||||| | |||| | || |||| | | Sbjct 8165 CGGC--ACCGATGGTGATTTTGCCGG-AGCCTTCGACCACTTCCTTCATGACGC---GGG 8218 Query 1196 CCGCGCGCT---CGCGGTACTGTTGCAGCCAACCGATGTTCACGTCCTGCAACAGCGGGT 1252 | ||| | |||| || ||||||||||| ||||| |||||||| || || | Sbjct 8219 CGGCGTTTTCGGCGCGCATCTTCTGCAGCCAACCAATGTTGACGTCCTGGCGAAGTGGAT 8278 Query 1253 T--TGCCTGACGGTCAGTCGTCGCGGC-CGCCTTCACGCCGTTCCAGCCGATCATGATGC 1309 | || ||| ||| | ||||||||| || | | ||||||||||| ||||||| ||||| Sbjct 8279 TGGTGGCTG--GGTTGGACGTCGCGGCGCGAC-TGACGCCGTTCCAACCGATCAGGATGC 8335 Query 1310 GATCGAGCGCCCCCTGGTTGAGGATCACGTCGCGGATGCGCTGTTGGAAGTCGGCGAACT 1369 | || |||||| | || ||||| |||| || || || |||||||||| ||||| Sbjct 8336 GGTCCAGCGCCTGGCGTTTCAGGATGGCGTCACGAATACGGGCCTGGAAGTCGGGGAACT 8395 Query 1370 TCGCCCATGCGTCGAGCTTGC-GATACGGAATCGCCGTGTCGTAGTCGGTCTTCTCGCAG 1428 | ||||| || || | ||||| | ||||| | || ||| ||| ||||| | |||| Sbjct 8396 TGGCCCACGCATCCAACTTGCTGTAACGGAGGTG-GGTATCGAAGTTGGTCTGCGAGCAG 8454 Query 1429 CGGTAGC 1435 ||||| Sbjct 8455 AAGTAGC 8461 Score = 138 bits (152), Expect = 2e-28 Identities = 161/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 4927 GTGAACGGCTGGCAGGAGCGGCACGAGTTCGAGCCCGACAGCGTGTTCCAGCT-CGTGCG 4985 ||| | |||||| |||| ||| |||| ||||| | || | || || || || | Sbjct 11963 GTGCAAGGCTGGAAGGATGAACACCAGTTTGAGCCGGGAAGTATTTTTCATCTGCGAGAA 12022 Query 4986 GCCGGACATCAATCAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCGGC 5045 || ||| | | |||||| | |||||| |||| |||| | || | |||| ||||| Sbjct 12023 GC-GGATTTGCACCAGGAGATTTATGGCTTGCCGGAGTGGATTAGTGCCTTGCAGTCGGC 12081 Query 5046 CTGGCTGAACGAATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCACGC 5105 | ||| ||||||||| | ||| ||||||| |||||||| |||||||| ||||| ||||| Sbjct 12082 GTTGCTCAACGAATCGGCCACGTTGTTCCGCCGCAAGTACTACGAGAATGGCAGTCACGC 12141 Query 5106 CGGCTTCATCCTGTACATGACCGACGCCGCGCAGA 5140 ||||||||| || ||||||||||| ||||| |||| Sbjct 12142 CGGCTTCATTCTCTACATGACCGATGCCGCACAGA 12176 Score = 95.1 bits (104), Expect = 3e-15 Identities = 89/112 (79%), Gaps = 6/112 (5%) Strand=Plus/Plus Query 34808 CGGCAGCACCACGCCGAGCTCGGCGAGGCCGGGGTTCGCTTCGAGCACGGCTTC---AAC 34864 |||||| | | |||| | ||||| ||||||||||| ||||| |||||||| || ||| Sbjct 6331 CGGCAGGATCGGGCCGTGGTCGGCCAGGCCGGGGTTGGCTTCAAGCACGGCCTCGGTAAC 6390 Query 34865 CGTGCCCGCCGTGCTGCCGTAGTGCCGCCAGCACAGCGCGTCGAGCGTCTCG 34916 ||| || |||| |||||||||||||||||| |||||||||| || ||| Sbjct 6391 ---GCCGGCAGTGCGGCCGTAGTGCCGCCAGCAAAGCGCGTCGACGGTGTCG 6439 Score = 87.8 bits (96), Expect = 4e-13 Identities = 234/352 (66%), Gaps = 12/352 (3%) Strand=Plus/Plus Query 33328 TACGCGCGGTCGAGCTTCACGTCATACAGGTTGATCGCGAAT--TCCGGGCCGTTGTAGC 33385 || ||||| | |||||| ||| || || || |||| || ||||| ||||||||| Sbjct 4799 TAGGCGCGCTGGAGCTTGGTGTCGTAGAGATT--TCGCAGATAGTCCGGCCCGTTGTAGA 4856 Query 33386 CTTCCGCGAACGTCGCCCACTTCCGGGCACGAAGCGCCGCTAGCAGCTTCTTGTCGGCCG 33445 | |||||| ||||| || |||| || ||| ||||| | ||||| Sbjct 4857 GCTTGGCGAACTGAGCCCATTTGCGGGTTTTCAGGGCCTTGTGCAGCACCGGGTCGGTTT 4916 Query 33446 CGACGTACCGCACGAACGCGTCGAGGTGCTCGGCTTCGCCCA-GCTCCATACGGGACACG 33504 ||| | | || ||| || ||||| || | | ||| || |||| | | | ||| Sbjct 4917 CGATGAAGCGGGTGAAGGCCTCGAGCTGTTGCGATTCACCGGCGCTCATTGCCGC-CACA 4975 Query 33505 AATTCGTCGACGCTCGCGTAACCCAGGCGTTTCCAGTGATACGCCATGATCTGGAACGCG 33564 ||||| | ||||| | ||| || || || ||||| ||| | |||| |||||||| ||| Sbjct 4976 AATTCCTGCACGCTTGTGTATCCGAGACGATTCCAATGAAAGCCCATAATCTGGAAAGCG 5035 Query 33565 CCCCAGCTCGCGGACTCGTAAGCGGATGCCGCATCGAT---GCGCGCCGCGGTGTCGAGC 33621 |||||| || ||||| | |||| | ||||||| ||| ||| | | || Sbjct 5036 CCCCAGGAAGCCGACTCCAAGGCGGCGGTGTCATCGATCAGGCGGGCCATAG---CTAGT 5092 Query 33622 CGCACGTATTCGGCGGCGCCGCCCTGGTAGCCGCCGCGCTTCGGGTTGACGA 33673 || || |||||||| |||||| ||| || ||| | ||||||||||||| Sbjct 5093 CGTTGGTGTTCGGCGGTGCCGCCGATGTATCCACCGGGTTTCGGGTTGACGA 5144 >seq3088488 Length=17142 Score = 387 bits (428), Expect = 3e-103 Identities = 1474/2275 (65%), Gaps = 119/2275 (5%) Strand=Plus/Plus Query 22282 CTACGTATCCGGGCGCGCTCGCGCCAGTCCATCAATTCGGCCAGGGAGAAGGCGGCCATA 22341 || |||| || |||||| |||||||||||||||| || |||| || ||||| Sbjct 14392 CTCCGTACCCTGGCGCGTTCGCGCCAGTCCATCAGGTCTTGCAGGCCCAACTGATCCATA 14451 Query 22342 TCGCGCGGCGTCCAGCCAAACACCGTCGCGATATCGGCCATCGCGTCTTCTACGCGGGCC 22401 || ||| | |||| ||| ||| || | ||||||||| ||||| |||||||| Sbjct 14452 TCAGCCGGTGCCCAGTGAAAAACCACAGCCAGATCGGCCATGGCGTCCTCTACGCGACGA 14511 Query 22402 GGGATTCCATGCTCGCTTTCAGCGCCTTCGGCATCAAAAAACCGGCGAAGATACCCCCCA 22461 ||||| | || | | ||| || |||| ||| ||||||||||| || | | | || Sbjct 14512 GGGATGC-ATCC--GTCTTCGCCGACTTCTGCAACAAAAAACCGGAGATTTTGCTGCTCA 14568 Query 22462 ACGCCACGAGGTCGGCCGGGTCCATGCCGGCCACGTCGAACTCGGTCAGCGTCGGCGTGC 22521 |||| ||||||||||||||||||||||| || |||| |||| || | ||||||| Sbjct 14569 GGGCCAGTAGGTCGGCCGGGTCCATGCCGGCGACTTCGACGACGGTGAGGCTTGGCGTGC 14628 Query 22522 TGATGCGCGGCAACACCTTGCGCAGCGCGTCGACATCGAGATTCACGAGTGCGGCGAGCG 22581 |||| ||||||| |||||| ||| | ||||||| | | || || | | || Sbjct 14629 TGATACGCGGCAGAACCTTGATCAGGCTGGCGACATCCATCTGCAGCAGCTCTACCAGGC 14688 Query 22582 ACGTGCCGCGCAGCGCGCCCGCGGCCGGCTTGCGCAACGTCAC-CTGCGTGATGGTC-TG 22639 | |||||| | | |||| | | |||||||||| || | ||| ||||| | || Sbjct 14689 TCACGCCGCGTAACTCGCCGGAGTTGGGCTTGCGCAGTGTGATGCTGT-TGATGCTGGTG 14747 Query 22640 CCCTTCGCGCTCGATCGGTGTGTCGAGCGTGTGCGTGTTCTCGTCGGGC-GCGGCGTG-- 22696 | |||| ||||||||| ||||| || ||||||||||||| | || || || Sbjct 14748 GTCC-CGCGACGGATCGGTGTATCGAGAATGACGGTGTTCTCGTCGGCCAGCTGC-TGCA 14805 Query 22697 -GCCAGCCGTTTCGATATGAGCGGTGTCGATGGTCGTCATGGTGTT---TCCTGGGTTGG 22752 | ||| |||| | ||| ||| | | |||| | || |||||| | Sbjct 14806 CGTCAGGTTGTTCGGT------GGTTTCGTT---CTTCATTGGATTCGCTCCTGGT---G 14853 Query 22753 ATGTGAAATTGGAATGGCCCGCGCTCGACGCGGGCGTCGATTACAGGCCCATCGCGCGGC 22812 || ||| | ||| | | |||| | | ||| | | | | |||||| || || Sbjct 14854 ATT--AAAGGGTGATGATC---GATCGAGG-GTGCG--GGTCAGATGCCCATGCCGTTGC 14905 Query 22813 GAAGGTCCGACGCGAGGTCCATGCCGTTGATCTTCTCGACCGCGTTCACGAAGTCGAGCT 22872 | | | | | | ||||| ||||||| ||||||||| ||| | | |||| || Sbjct 14906 GGTGCTTCTCCAGCATGTCCACACCGTTGACCTTCTCGACAAAGTTGAGCAGATCGATCT 14965 Query 22873 CGATGAGGTCGCGCCCGTTCACGGTCAGCTTGTAGTAGCTGGCGTTGGTCGTGATCTTGA 22932 |||||| || || | ||||||||||||||||||||| | |||| || || | Sbjct 14966 CGATGATTTCTTCGCCATCTACGGTCAGCTTGTAGTAGCTGCAGGTGGTGGTCATGGAGT 15025 Query 22933 ATTTAGTGTCTTCCTTCGCCTTCGCGGTGCCCATGTCGATCTCTTCGTGGCGGCCCTTCA 22992 || |||||| || | || || |||||| ||||| |||||| ||||| || Sbjct 15026 GTTCAGTGTCCTCGCCGGGCTGGGCATCGCCCATCTCGATGGTTTCGTGACGGCCACGCA 15085 Query 22993 CTACCACTTCGATCTGGTCGTGCTTCT--TGCTGTCCTCGCGACGATAGCCGCCGGCGAA 23050 | |||||||| | | | | |||| || |||| || | | || ||| | ||| Sbjct 15086 CAACCACTTCCACATTGCTGA-CTTCGCCTG-TGTCGTCTTGCTGGTAAGGGCCAGAGAA 15143 Query 23051 GCGCAGCAGCACGCCGTCGTGCTGCACGGCGCCGTACTGTTCGAGC-ACTTC-GACCATG 23108 ||||| ||| | | | | || |||||| |||| || | || || | | Sbjct 15144 TCGCAGGGCCACACTGGAGGCGTTGACCGCGCCGAACTGACGCAGAGAGATCAGATC--G 15201 Query 23109 AAGCCGCCGCACGTCCACTCGAGCTGGA-GC--TCTTCGC---TGCCGTAGTCGATTTTC 23162 | ||| ||| | |||| |||| ||||| || || ||| |||| ||| ||| Sbjct 15202 AGGCCACCGGTCTTCCATTCGAACTGGATGCCGTCGTCGGACATGCCCAGGTCAGCTTTG 15261 Query 23163 ACGGGGCCGGTCATGCCGCTGCCCTGCCACGCTTCCATCTTGCGCTTGAGCTTCGGAAGA 23222 || ||||| ||||||||| ||| | |||||||||||||||| ||| || || Sbjct 15262 ACCGGGCCATTCATGCCGCCGCCGCGATACGCTTCCATCTTGCGGCCGAGGGAGGGCAGG 15321 Query 23223 TTGAGCT-CTTCGACTTCGCCGACGAAGTTCGCGCCGTTGTGAAAGACGTTGAAGCCCTT 23281 |||| |||| || ||||| || | ||||| | || | ||||| | || Sbjct 15322 GTGAGGGACTTC-ACCAAGCCGAGATAGCTGTTGCCGTCATTGAACAGGTTGAGGTTTTT 15380 Query 23282 CAGTTTTCGAGGCATACCCATTGCATTTGACTCC--------TGTT-------AGCCCGC 23326 || || |||||||| |||| || | |||| |||| | | | | Sbjct 15381 GAGCTTGCGAGGCATTGCCATGGCGGTGTTCTCCGGGATACGTGTTCAGGGTGAACTCCC 15440 Query 23327 CACGCGCG-----CCGG----------------------GAAATCGGCGAGGAAGCGGTC 23359 | |||| | |||| ||| ||| ||| | ||||| Sbjct 15441 CTCGCGGGGAGACCCGGTTTAGCTGCTGATGCCCTTGGCGAAGTCGATCAGGTAACGGTC 15500 Query 23360 GGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGAACCGGCGTGTAGTCATAATC 23419 |||||| |||||||| | || | ||| || ||||| || || |||||||| ||||| Sbjct 15501 GGTGATTCGCTGGCGGAAGGTGAGGTCTTCAAGTGGCGGCACGGGGGTGTAGTCGTAATC 15560 Query 23420 GATGTACGCCTTGCCGGACGCGAGAATGTCGGCCGTGTTC--GGC-TCCGGATCGATCCA 23476 | | |||||||| | ||| |||| ||||| | | ||||| | |||| Sbjct 15561 AAGCCAGAGCTTGCCGGCCTTGAGGGTGTCTTTGGTGTTGATGTCGTCCGGGT---TCCA 15617 Query 23477 CGCGCTACCGCCGATCAGGTAGCCGTTCGCGACCTGCTGCCGAAACCAGCCGTTGATGCT 23536 || ||||||||||||||||| | | | || || | | | || | | || Sbjct 15618 GCAACTGCCGCCGATCAGGTAGCCCTGGGATTTCAACTCGCGCATCTTGGCGCTTACGCC 15677 Query 23537 TTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCGTCGACGACGGGCATCTGCGC 23596 ||| || | |||||| | || || | | || |||| ||| || | ||| ||||| Sbjct 15678 TTCGACCAGGTCGCGTACCAGGGAGGCGTGCATAGGGCGGTCAACTGCCCACATGTGCGC 15737 Query 23597 TTCGGCGATCGAATCGGCGGCCACCTGAGCGGTGCGCGTGTAGTTCTCGAACGCGAACTT 23656 |||| | || | || ||| | ||| |||||||| |||||||| ||||| |||||| Sbjct 15738 TTCGCCCATGGTGTCCGCGAGGATCTGCGCGGTGCGGGTGTAGTTTTCGAAGGCGAACAA 15797 Query 23657 CGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACCGGAAGCCGTTGCGGTTCACGAGCGT 23716 ||| || || ||| ||||| |||||||| || || |||||| ||| | || || Sbjct 15798 CGGGTCATCACTGCAGGTGCGGCTACCCCAGAAGCGAAAACCGTTGGCGTTGATCAGGGT 15857 Query 23717 CGTCACTTCGT-GCTCGTTCAGGTAGCCCGCATCGGTCGCCGGGTCCTGCAAATCCCACG 23775 || || |||| ||| ||| |||||| || ||||| || |||| |||| |||||| Sbjct 15858 GGTGACGTCGTTGCT-GTTGAGGTAGTTGGCGTCGGTGGCTGGGTTTTGCAGATCCCAGA 15916 Query 23776 ACACGTCGGCGCTGATGCCGGACACGCCGTTCACGACGACATTCGAAATCGTCTTGTGCC 23835 |||||||||||||||| |||| |||||| ||||| | || || || | || || |||| Sbjct 15917 ACACGTCGGCGCTGATACCGGTCACGCCACTCACGGCCACGTTGGACAGGGTTTTATGCC 15976 Query 23836 AGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCCGGCGGCGATCGCCGGCGCCGGGATGA 23895 | || | || | ||||||||| ||||| | |||| |||| ||| |||| | Sbjct 15977 AACCCGTCTCTTGGTCGATCTTGGCGCGAAGGCCGAGGGCGCGGGCCACGGCCGAAGCGC 16036 Query 23896 CGGCCGTCGAGTTCGTCGTGTCGTCCCAGCCGAGCCAGTCCGGCCAGATCACCATGATTT 23955 ||| ||| ||| || ||||||| || |||||||||| |||||||| |||| Sbjct 16037 TGGCGGTCTTGTTGGTGACAGTGTCCCAGTTCAGGAAGTCCGGCCAAATCACCATCATTT 16096 Query 23956 CGCGTTGGCCGAACTGCCTGCGGTACGCGGCGGCTTCTTCCTTCGTCTTGCAG--CCGGA 24013 |||| ||||| | | ||||||||| | | |||||||| || |||||| || | Sbjct 16097 CGCGGGCACCGAAGTTCTCGCGGTACGCCACTACCTCTTCCTTGGTTTTGCAGTTCCAGG 16156 Query 24014 CGCCGACACATAGGCCATCGCGCGCAGCGACTGCGCGGTCGCCGCGAGCGCGGCCGCGAC 24073 ||| || || || | |||||||| | ||| | || |||| |||| || || Sbjct 16157 CGC--TTACGTATGCAAAGGCGCGCAGGTCTTTGGCGATGGCGCCGAGGGCGGTGGCTAC 16214 Query 24074 CGGCTGCGTATCGAGGCCGGGCGCGGCGAGAATGCGCGGCTTCACGCCGA-GCGCACCCT 24132 ||| | |||||||| ||| || | || || ||||| ||| ||| | ||| | Sbjct 16215 TGGCAAACTGTCGAGGCCTGGCACGCCAAGGATACGCGGAGTCATGCCCACGCGTGATTT 16274 Query 24133 GCGCGGCGAGCAGCGCCTTGATGCCCGTGTACTTGCCGTCCGGCGTCACGGTGCCGAT-- 24190 | || |||||||| || || ||||| ||||| | ||| || || ||| || Sbjct 16275 G-GCTGCGAGCAGAGCTTTCATGCCGGTGTATTGACCGGTTGGTGTTGTACCGCCAATCA 16333 Query 24191 -GACGTTCGAGGTCGTCTCGTCGGCGTCCTTGCCTTCGGCGACGCGCACGACG--ACGGT 24247 | || ||| |||||| | | |||| |||||| ||| || || ||| | || Sbjct 16334 GGGCGCTCGTAGTCGTCGCTT---CGTCAGCGCCTTCTTTGACCCGTACCACGATAACGT 16390 Query 24248 CAGCGGCTTCGTCTGCTTGCCGATCGCGT-CGAGCGTGCGGCGCAGCGTGCCTTTCTTGC 24306 | ||||| ||||| | | |||| | | | || || || ||| ||||| || || Sbjct 16391 AA--GGCTTGGTCTGGTCGGCGATGCCTTGCAGGCTGGCAGC-CAGGGTGCCCTTGACGC 16447 Query 24307 CGGCCTTGCCGAGCGCGGCGACGACGTTCGTCAGCAGCACGGGCGTATTGAGCGGAAACG 24366 |||||||||||| |||| ||||| || | || || || || | || || || Sbjct 16448 CGGCCTTGCCGACGGCGGTTTGCACGTTGGTGATGAGGACTGGAGTGTCCAGAGGGAAAA 16507 Query 24367 CGCTCGCGTCAGCGTCGGCCGCCGTGCAGACGACGCCGAGCACGGCCGTCGACACTGAGC 24426 || | ||| || || | || ||||| || | ||||| || || || | | | || Sbjct 16508 CGAGTGGGTCCGCATCTTCAGCGGTGCAAACCATGCCGATGACTGCGGTGGGAATAGTGC 16567 Query 24427 GAATCGGGCGGCCGCCTTCGTTGATTTCGATGACGCGTACGCCGTGGTGGTAATC 24481 |||| |||||| ||| ||||||| ||||||||| || ||||||||| | ||||| Sbjct 16568 GAATGGGGCGGGTGCCGTCGTTGAGTTCGATGACCCGCACGCCGTGGAGATAATC 16622 >seq3063309 Length=1409 Score = 80.6 bits (88), Expect = 6e-11 Identities = 410/645 (64%), Gaps = 24/645 (4%) Strand=Plus/Plus Query 3194 CGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTC 3253 ||||||||||||||| || ||| | || ||||| |||||||| |||| ||| || Sbjct 3 CGCAACATCCTGAAAAGCCGCCAGGTGGGCCTGACGTACTACTTCGCCGGCGAAGCGTTC 62 Query 3254 GTCGACGCGCTCGACACCGACCGCAATCAGATCTTCCTATCGGCCAGCAAGGCGCAGGCG 3313 | ||||| | |||| | ||| ||| | ||||| ||||||||| ||||| || Sbjct 63 ATGGACGCCGTGCTGACCGGCGACAACCAGGTGTTCCTGTCGGCCAGCCGCTCGCAGTCG 122 Query 3314 CACGTCTTCAAGCA-ATACATCACGCAGTTCGC-GCGCGATGCCGCCGACGTCGAGCTCA 3371 | | ||| ||| ||||||| ||||| || || || |||| ||||||| | Sbjct 123 GAAATTTTC-CGCAGTTACATCATCCAGTTTGCAAAGCAGTG-GTTCGACATCGAGCTGA 180 Query 3372 CGGGCGACCCGATCATCTTGCCGAGCGGTGCGACGCTGTACTTCCTGGGGACGAACGCGC 3431 | ||| ||||||||| | | ||| || |||| ||| || ||| || Sbjct 181 CCGGCAACCCGATCACGCTCAGCAACGGCGCCGAGCTGCGTTTCTTGTCGACCAATAGCA 240 Query 3432 GTACCGCGCAGTCGTATCACGGCAACTTCTATTTCGACGAATACTTTTGGGTTCCGAAGT 3491 | ||||| ||| || || ||| || |||| |||| || || |||||| | | | | Sbjct 241 GCACCGCCCAGGGCTACCATGGCCACGTCTACGTCGATGAGTATTTTTGGATACGTGACT 300 Query 3492 TCCGCGAGTTGAACAAGGTTGCGTCGGGCATGGCGATGCACAAGCGCTGGCGCAAGACCT 3551 || | | | | || || || | ||||| | |||||| |||||||| |||| Sbjct 301 TCGACAAACTCAGCACCGTGGCCAGTGCCATGGGCACCCACAAGAAGTGGCGCAAAACCT 360 Query 3552 ACTTCAGCACGCCGTCGAGTGTCACGCACGAGGCGTTCGCGTTCTGGAGCGGCGCGCA-- 3609 |||| ||||| ||| ||||| | |||| | |||||||| |||| | | Sbjct 361 ACTTTTCGACGCCCAGCGCAGTCTCGCACCAAGCGTACCCGTTCTGGTCGGGCGAGGAAT 420 Query 3610 --CGCGAACCGCGGCCGCGCC--GCGGGCGAGCGCATCCAGATCGACACGAGCCACGAGG 3665 ||| ||| || |||| | | ||| ||| || | | || ||||| Sbjct 421 TCCGC-AACAGCAAGCGCGGCAAGAAGGCCGGCGGCACCTGGCCCAC--------CGAGG 471 Query 3666 CGCTCGTGCGC----GGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTG 3721 || || | | | ||| |||||| |||| || ||||| | | | | ||| || Sbjct 472 CG-TCATACACCCAGGGCGCATTGTGCCCCGACGGCCAATGGCGCAAAACCATCACCCTG 530 Query 3722 CTCGACGCGATGGCGGGCGGCTGCAACCTGTTCGACATCGACGAGCTGCGCCGCGAATAC 3781 |||||| || || ||||||||| | ||||||||| |||| | |||| | || ||| Sbjct 531 GACGACGCCATAGCCGGCGGCTGCGATCTGTTCGACCTCGAGCAACTGCAGCTGGAGTAC 590 Query 3782 AGCGCCGAGGAATTCGCGAACCTGCTGATGTGCCACTTCATCGAC 3826 || || ||||| | | ||| | ||| | ||||||||| Sbjct 591 GACGAAGACAAATTCCAGCAGCTGTTCTACTGCAAGTTCATCGAC 635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110059373887146