Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq3088503 488 1e-133 seq3088488 381 1e-101 seq3063309 127 5e-25 >seq3088503 Length=21467 Score = 488 bits (540), Expect = 1e-133 Identities = 1025/1532 (67%), Gaps = 14/1532 (1%) Strand=Plus/Plus Query 2933 CGTCGAGCGCATCGAGGCATCGCTCGAAGTACGCCTGATGGTGTTGATCGCGAAGGAGAA 2992 |||||||||||||| | |||| |||| || || || | ||||| ||||| | Sbjct 9938 CGTCGAGCGCATCGGCGGGGCGCTGGAAGCGCGGTTGGTGCAGCTGATCCTCAAGGAAAG 9997 Query 2993 GAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGCCAAGTCGAGCGGCTCGC 3052 ||| ||||| ||||| ||||||||| || ||||| ||||||| | || || | || Sbjct 9998 CAAGAGCGGCGGGGACTTCAAGGAAATTGATCTGCTGCACCGCCAATTGGAACGCCAGGC 10057 Query 3053 GCGCGTGC-GCAAGTACGACGAGACGGGGAAGGAATCGGACCTGAACCCGAAGATTGCGT 3111 | | | || | | | | ||| | ||| | || || ||||| || | || Sbjct 10058 CAGAATTCAGCGCTTTCAGGGCGGCGGT-ACCGAAACCGAGCTCAACCCTAACCTGGCTA 10116 Query 3112 CGCGCAACGCCGGCCCGAAACGCCGTGCGCCGCGCAACGAAATCAGCGACGAGCAGCACA 3171 ||||||| || ||||| | || ||||| |||||||| |||||| | Sbjct 10117 AACGCAACGAGGGTCCGAAGAAAAAGACCCCAAAAAACGATATCAGCGAAGAGCAGATCG 10176 Query 3172 AGCGCATCATCGAAGCGTTCCGCGATTCGCTGTT-CGACTATCAGAAAGTCTGGTATCGG 3230 ||| | |||||||| ||| |||||| |||||| ||||||| |||||| ||| Sbjct 10177 AGCTGTTGCGTGAAGCGTTTATCGACG-GCTGTTTCGACTACCAGAAAGACTGGTACCGG 10235 Query 3231 AACGGCGATCAGCGCACGCGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTAC 3290 ||| |||| || || ||| |||||| ||| ||||||||||| ||||| | ||| Sbjct 10236 GCTGGCAATCAACGGACTCGCGTCATCCTCAAAAGCCGGCAGATCGGCGCGACCTATTAC 10295 Query 3291 TTCGCGCGCGAGGCGCTCGTCGACGCCCTCGACACCGACCGTAATCAAATCTTCCTGTCG 3350 || || ||||||||| | | || || || || |||| || ||||| ||||||||||| Sbjct 10296 TTTGCCCGCGAGGCGTTTCTTGATGCGCTGGAAACCGGGCGCAATCAGATCTTCCTGTCC 10355 Query 3351 GCGAGCAAGGCTCAGGCGCACGTCTTCAAGCAGTACATC-ACGCAGTTCGCGCGCGCGGC 3409 || || || || | | || ||||||| | ||| || || || | || Sbjct 10356 GCATCGAAAAACCAAGCCTATCTGTTTCGCGGGTACATCCAGGCATTT-GCCCGTGAGGT 10414 Query 3410 GGCCGACATCGAGCTCACGGGCGATCCGATCATCTTGCCGAGCGGCGCGACGCTGTACTT 3469 || ||||||| ||||| ||||| ||| | ||||| | |||||| ||||| || Sbjct 10415 TATCGGTGTCGAGCTGACGGGGGATCCCATCGTATTGCCCAACGGCGCCGAGCTGTTTTT 10474 Query 3470 CCTGGGGACGAACGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAATA 3529 ||| || || || ||||| ||||| ||| ||||||||||| |||||||||||||||| Sbjct 10475 CCTCGGTACCAATGCGCGTACCGCCCAGGGCTACCACGGCAATTTCTACTTCGACGAATT 10534 Query 3530 CTTTTGG--GTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCAC 3587 ||| ||| |||| ||||| || |||||||||||||| || |||||||| |||||| Sbjct 10535 CTTCTGGACGTTC--AAGTTTGAGGAACTGAACAAGGTCGCTTCGGGCATGGCCATGCAC 10592 Query 3588 AAGCGCTGGCGCAAGACTTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGTACGCG 3647 ||| |||||||| || |||||| |||||||||||| | | || ||||| ||| | Sbjct 10593 AAGAAGTGGCGCAAAACCTACTTCTCGACGCCGTCCAGCATGGCCCATGAGGCCTACACC 10652 Query 3648 TTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGATCGAC 3707 ||||||| ||||| || | ||| || | |||| | | || | || ||||| Sbjct 10653 TTCTGGACCGGCGAGCGCTTCAACAAGGGTAAGCCAGCGGCGCAACACACCAAGGTCGAC 10712 Query 3708 ACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATC 3767 ||||| ||||||| | || ||| ||||||||| | ||||||||||||| Sbjct 10713 GTTTCCCACGGGGCGCTCCAACAGGGGCGGTTCTGCGAGGACCGGTTGTGGCGGCAGATC 10772 Query 3768 GTGACCGTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGAGCTGCGC 3827 || ||| | || || || | |||||||| || ||||||||||| || ||| |||| Sbjct 10773 GTCACCATCCTGGACGCAGAGCACGGCGGCTGTGATCTGTTCGACATTGAGGAGTTGCGT 10832 Query 3828 CGCGAGTACAGCGCCGAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCGACGATTCG 3887 || ||||||||| | |||| ||||| || ||| | ||||| |||| | |||||| | Sbjct 10833 CGGGAGTACAGCCCTGAGGCGTTCGCCAACCTGTTGATGTGTGAGTTTGTTGACGAT--G 10890 Query 3888 CTGTCGG--TGTTCAAGCTGTCGGACCTGCAACGCTGCATGGTCGACTCGTGGGAAGAAT 3945 | | | | || | || || ||||| |||||||||||||| |||| |||| Sbjct 10891 GAGCCAGCATCTTTCCGTTGGCGTTGCTGCAGAGCTGCATGGTCGACAGTTGGGTTGAAT 10950 Query 3946 GGGCGGACGACTTCTCGCNNNNNNNNNNNNNNNCGTTCGGCTATCGCGAGGTGTGGGTCG 4005 |||| || |||| | || ||||||| | || |||| ||| ||| Sbjct 10951 GGGCAGAGGACTACAAGCCATTCGCCATGCGGCCGTTCGGTGACCGTCAGGTATGGATCG 11010 Query 4006 GCTACGATCCGGCGCTCACGGGCGACTCGGCGGGGCTCGNNNNNNNNNNNNNNNNNNNNN 4065 ||||||| || ||| || || || | | ||||| | Sbjct 11011 GCTACGACCCAGCGGAAACCGGTGATTGCTCCGGGCTGGTGGTGGTTGCGCCGCCGCTGG 11070 Query 4066 NNNNNNNNNNNNCCTTCCGCGTGCTCGAACGTCATCAGTTCCGCGGCAACGACTTTGAGG 4125 |||||||| || || || || || ||||| |||| ||||||| || Sbjct 11071 TACCGGGCGGCAAATTCCGCGTCCTGGAGCGGCACCAATTCCGGGGCATGGACTTTGCGG 11130 Query 4126 AACAGGCCGCGGCAATCGAGGCGATCACGCAGCGCTACAACGTCGGCTACATCGCGATCG 4185 ||||| || ||| | || | |||||| || ||| |||| ||| | Sbjct 11131 CCCAGGCGGCATTTATCAAAAACGTCTGCGACCGCTACTGGGTGACCTATATCGGGATTG 11190 Query 4186 ACACCACGGGCATGGGGCAAGGCGTCTACCAGCTCGTGCGCAAGTTCTTCCCGGCCGCCG 4245 | ||| || |||| ||||| ||||| |||||| ||||||||||||| | Sbjct 11191 ATGTCACCGGGCTGGGTAGCGGCGTGGCGCAGCTGGTGCGCCAGTTCTTCCCGGCTGTGA 11250 Query 4246 TCGCGCTGAACTACTCGCCCGAGGTGAAAACCCGCCTCGTGCTCAAGGGCCAGTCCGTCG 4305 | | | | ||| |||||||| || ||||| ||||| ||||| |||| | | ||| Sbjct 11251 CCACCTTCAGCTATTCGCCCGAAGTCAAAACACGCCTGGTGCTGAAGGCCTATGACGTGA 11310 Query 4306 TCCGGAACGGCCGCCTGCAATTCGACGCGGGCTGGACCGATCTGGCGGCGGCGTTCATGG 4365 ||| |||||||| ||| | |||||||| || |||||||| ||||| | || | |||| Sbjct 11311 TCCATAACGGCCGGCTGGAGTTCGACGCCGGGTGGACCGACATGGCGCAGTCGATGATGG 11370 Query 4366 CGATCAAACAGACGATGACGGCGAGCGGCCGTCAGGCGACCTACACCGCTGGCCGTACCG 4425 ||||| ||||| | || || |||| || ||| ||||||||||| || || | || Sbjct 11371 CGATCCGCAAGACGGTCACCGCAGGCGGTCGCCAGTACACCTACACCGCAGGGCGCAACG 11430 Query 4426 ACGAGACGGGCCACGCCGACCTGGCGTGGGCG 4457 || | || ||||| ||||||||||| |||||| Sbjct 11431 ACAACACCGGCCATGCCGACCTGGCCTGGGCG 11462 Score = 306 bits (338), Expect = 8e-79 Identities = 516/726 (71%), Gaps = 22/726 (3%) Strand=Plus/Plus Query 776 GCCAGTTCGATGTTTTCGGCCACGCAGCCGCAACCGAAGTCTTCGACCACGTAGGCGTCG 835 ||||||||||||||||| || | || | || | | |||||| | ||||| ||||| Sbjct 7747 GCCAGTTCGATGTTTTCAGCGAGCGAGGCACATTCCAGGTCTTCAATGACGTATGCGTCA 7806 Query 836 TTCGACGATTCGTAGTTCTCGATGCGGTCGCGTTCCGGCACTTCCTTCAGCG-TGCGCCG 894 || ||| |||||||| ||||||||||| || | |||| | | | || |||| || Sbjct 7807 TTGACCGACTCGTAGTTTTCGATGCGGTCACGCTT-GGCATTGTCGACGACGGTGCGGCG 7865 Query 895 GCGCGCGCCTTCCTGGTAGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCG 954 ||| ||||||||| ||||||||||||| ||| |||||| ||||||| || | |||| Sbjct 7866 GCGGCTGCCTTCCTGCCAGTAGATCGACAGGTTTTCCAGCTTGGTGACCAGCAACCCGCG 7925 Query 955 CTTCGGGAAGAACGGCACGCGCACGGCCGGCAGATTGCCGATGCGCTTCTGGCTCACGAT 1014 | ||||||| | |||||||||||||| |||| |||||| | |||||| || || || Sbjct 7926 CGGCGGGAAGTAAGGCACGCGCACGGCTGGCAAATTGCCCAAGCGCTTTTGACTGGTGAC 7985 Query 1015 CAGATCGGCCGCGAGCCGCTCGGTCGGCGCCTGCGTC-GCGTTGACGATCGGGAAATACT 1073 | |||||| || ||| || |||||||| | ||| ||||| |||||||||||||| Sbjct 7986 GATATCGGCGGCCAGCATTTCAGTCGGCGCGT-TGTCTTTGTTGATGATCGGGAAATACT 8044 Query 1074 TGTCGTGCAGCAGCTCGCGGCCGCAGATCACGACGAGGCCCGTGTCTTCCTGGAACCACG 1133 ||||| |||||| | ||| ||||||||||| || || | | |||||||||| |||||| Sbjct 8045 TGTCGGCCAGCAGTTGGCGACCGCAGATCACCACCAGATCAGGGTCTTCCTGGTACCACG 8104 Query 1134 GGTCGATCATCGACGACACGATATCCATCACGAGCGCGTCGAGGTTCTCGTAATC--GCC 1191 | | || | | ||| || | || || ||||||||||| | | || | Sbjct 8105 GCGCAATGAACTCTTCCACCATGCTGAATACCAGGGCGTCGAGGTTGGTGAAGTCTTTAC 8164 Query 1192 CGCCTTGCCGATGAGCACCTTGCCGGCCTGCTTCG-CGCCTTCGTGCAGCACGC--GCTG 1248 || | |||||| | ||||||| ||||| | |||| | || |||| || | Sbjct 8165 CGGC--ACCGATGGTGATTTTGCCGG-AGCCTTCGACCACTTCCTTCATGACGCGGGCGG 8221 Query 1249 CGCTGCGCGCTCGCGGTACTGTTGCAGCCAGCCGATGTTCACGTCCTGCAACAGCGGGTT 1308 || | || |||| || |||||||| || ||||| |||||||| || || || Sbjct 8222 CG-TTTTCG-GCGCGCATCTTCTGCAGCCAACCAATGTTGACGTCCTGGCGAAGTGGATT 8279 Query 1309 --TGCCTGACGGTCGGTCGTCGCGGC-CGCCTTCACGCCGTTCCAGCCGATCATGATGCG 1365 || ||| ||| || ||||||||| || | | ||||||||||| ||||||| |||||| Sbjct 8280 GGTGGCTG--GGTTGGACGTCGCGGCGCGAC-TGACGCCGTTCCAACCGATCAGGATGCG 8336 Query 1366 ATCGAGCGCCCCCTGGTTGAGGATCACGTCGCGGATGCGCTGCTGGAAGTCGGCGAACTT 1425 || |||||| | || ||||| |||| || || || ||||||||||| |||||| Sbjct 8337 GTCCAGCGCCTGGCGTTTCAGGATGGCGTCACGAATACGGGCCTGGAAGTCGGGGAACTT 8396 Query 1426 CGCCCACATGTCGAGCTTGC-GATACGGAATCGCCGTGTCGTAGTCGGTCTTCTCGCAGC 1484 |||||| || | ||||| | ||||| | || ||| ||| ||||| | |||| Sbjct 8397 GGCCCACGCATCCAACTTGCTGTAACGGAGGTG-GGTATCGAAGTTGGTCTGCGAGCAGA 8455 Query 1485 GGTAGC 1490 ||||| Sbjct 8456 AGTAGC 8461 Score = 134 bits (148), Expect = 3e-27 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 5054 CAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCGGCCTGGCTGAACGAA 5113 |||||| | |||||| |||| |||| | || | |||| ||||| | ||| |||||| Sbjct 12035 CAGGAGATTTATGGCTTGCCGGAGTGGATTAGTGCCTTGCAGTCGGCGTTGCTCAACGAA 12094 Query 5114 TCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCACGCCGGCTTCATCCTG 5173 ||| | ||| ||||||| |||||||| |||||||| ||||| |||||||||||||| || Sbjct 12095 TCGGCCACGTTGTTCCGCCGCAAGTACTACGAGAATGGCAGTCACGCCGGCTTCATTCTC 12154 Query 5174 TACATGACCGACGCCGCGCAGA 5195 ||||||||||| ||||| |||| Sbjct 12155 TACATGACCGATGCCGCACAGA 12176 Score = 91.5 bits (100), Expect = 3e-14 Identities = 81/100 (81%), Gaps = 6/100 (6%) Strand=Plus/Plus Query 35824 GCCGAGCTCGGCGAGGCCGGGGTTCGCTTCGAGCACGGCTTC---AACCGTGCCCGCCGT 35880 |||| | ||||| ||||||||||| ||||| |||||||| || ||| ||| || || Sbjct 6343 GCCGTGGTCGGCCAGGCCGGGGTTGGCTTCAAGCACGGCCTCGGTAAC---GCCGGCAGT 6399 Query 35881 GCTGCCGTAGTGCCGCCAGCACAGCGCGTCGAGCGTCTCG 35920 || |||||||||||||||||| |||||||||| || ||| Sbjct 6400 GCGGCCGTAGTGCCGCCAGCAAAGCGCGTCGACGGTGTCG 6439 Score = 87.8 bits (96), Expect = 4e-13 Identities = 234/352 (66%), Gaps = 12/352 (3%) Strand=Plus/Plus Query 34332 TACGCGCGGTCGAGCTTCACGTCATACAGGTTGATCGCGAAT--TCCGGGCCGTTGTAGC 34389 || ||||| | |||||| ||| || || || |||| || ||||| ||||||||| Sbjct 4799 TAGGCGCGCTGGAGCTTGGTGTCGTAGAGATT--TCGCAGATAGTCCGGCCCGTTGTAGA 4856 Query 34390 CTTCCGCGAACGCTGCCCACTTCCGGGCACGAAGCGCCGCTAGCAGCTTCTTGTCGGCCG 34449 | |||||| ||||| || |||| || ||| ||||| | ||||| Sbjct 4857 GCTTGGCGAACTGAGCCCATTTGCGGGTTTTCAGGGCCTTGTGCAGCACCGGGTCGGTTT 4916 Query 34450 CGACGTACCGCACGAACGCGTCGAGGTGCTCGGCTTCGCCCA-GCTCCATACGGGACACG 34508 ||| | | || ||| || ||||| || | | ||| || |||| | | | ||| Sbjct 4917 CGATGAAGCGGGTGAAGGCCTCGAGCTGTTGCGATTCACCGGCGCTCATTGCCGC-CACA 4975 Query 34509 AATTCGTCGACGCTCGCGTAACCCAGGCGTTTCCAGTGATACGCCATGATCTGGAACGCG 34568 ||||| | ||||| | ||| || || || ||||| ||| | |||| |||||||| ||| Sbjct 4976 AATTCCTGCACGCTTGTGTATCCGAGACGATTCCAATGAAAGCCCATAATCTGGAAAGCG 5035 Query 34569 CCCCAGCTCGCGGACTCGTAAGCGGATGCCGCGTCGAT---GCGCGCCGCAGTGTCGAGC 34625 |||||| || ||||| | |||| | | ||||| ||| ||| || | || Sbjct 5036 CCCCAGGAAGCCGACTCCAAGGCGGCGGTGTCATCGATCAGGCGGGCCATAG---CTAGT 5092 Query 34626 CGCACGTATTCGGCGGCGCCGCCCTGGTAGCCGCCGCGCTTCGGGTTGACGA 34677 || || |||||||| |||||| ||| || ||| | ||||||||||||| Sbjct 5093 CGTTGGTGTTCGGCGGTGCCGCCGATGTATCCACCGGGTTTCGGGTTGACGA 5144 >seq3088488 Length=17142 Score = 381 bits (422), Expect = 1e-101 Identities = 1475/2281 (65%), Gaps = 131/2281 (6%) Strand=Plus/Plus Query 23286 CTACGTATCCGGGCGCGCTCGCGCCAGTCCATCAATTCGGCCAGGGAGAAGGCGGCCATA 23345 || |||| || |||||| |||||||||||||||| || |||| || ||||| Sbjct 14392 CTCCGTACCCTGGCGCGTTCGCGCCAGTCCATCAGGTCTTGCAGGCCCAACTGATCCATA 14451 Query 23346 TCGTGCGGCGTCCAGCCAAACACCGTCGCGATATCGGCCATCGCGTCTTCTACGCGGGCC 23405 || ||| | |||| ||| ||| || | ||||||||| ||||| |||||||| Sbjct 14452 TCAGCCGGTGCCCAGTGAAAAACCACAGCCAGATCGGCCATGGCGTCCTCTACGCGACGA 14511 Query 23406 GGGACTCCATGCTCGCTTTCAGCGCCTTCGGCATCAAAAAACCGGCGAAGATACCCCCCA 23465 |||| | ||| | | ||| || |||| ||| ||||||||||| || | | | || Sbjct 14512 GGGA-TGCATCC--GTCTTCGCCGACTTCTGCAACAAAAAACCGGAGATTTTGCTGCTCA 14568 Query 23466 ACGCCACGAGGTCGGCCGGGTCCATGCCGGCCACGTCGAACTCGGTCAGCGTCGGCGTGC 23525 |||| ||||||||||||||||||||||| || |||| |||| || | ||||||| Sbjct 14569 GGGCCAGTAGGTCGGCCGGGTCCATGCCGGCGACTTCGACGACGGTGAGGCTTGGCGTGC 14628 Query 23526 TGATGCGCGGCAACACCTTGCGCAGCGCGTCGACATCGAGATTCACGAGTGCGGCGAGCG 23585 |||| ||||||| |||||| ||| | ||||||| | | || || | | || Sbjct 14629 TGATACGCGGCAGAACCTTGATCAGGCTGGCGACATCCATCTGCAGCAGCTCTACCAGGC 14688 Query 23586 ACGTGCCGCGCAGCGCGCCCGCGGCCGGCTTGCGCAACGTCAC-CTGCGTGATGGTC-TG 23643 | |||||| | | |||| | | |||||||||| || | ||| ||||| | || Sbjct 14689 TCACGCCGCGTAACTCGCCGGAGTTGGGCTTGCGCAGTGTGATGCTGT-TGATGCTGGTG 14747 Query 23644 CCCTTCGCGCTCGATCGGTGTGTCGAGCGTGTGCGTGTTCTCGTCGGGC-GCGGCGTGGC 23702 | |||| ||||||||| ||||| || ||||||||||||| | || || || Sbjct 14748 GTCC-CGCGACGGATCGGTGTATCGAGAATGACGGTGTTCTCGTCGGCCAGCTGCT--GC 14804 Query 23703 CCGTC--GTT--TCGATGTGAGCGGTATCGATGG---TCG-TCATGGTGTTTCCTGGGTT 23754 |||| ||| ||| || || | | || | ||| || ||||| || |||| Sbjct 14805 ACGTCAGGTTGTTCGGTGGTTTCGTTCTTCATTGGATTCGCTCCTGGTGATTAAAGGGT- 14863 Query 23755 GGATGTGAAATTGGACTGGCCCGCGCTCGACGCGGGCGTCGATTACAGGCCCATCGCGCG 23814 |||| || || |||| | | ||| | | | | |||||| || Sbjct 14864 -GATG----AT------------CGATCGAGG-GTGCG--GGTCAGATGCCCATGCCGTT 14903 Query 23815 GCGAAGGTCCGACGCGAGGTCCATGCCGTTGATCTTCTCGACCGCGTTCACGAAGTCGAG 23874 ||| | | | | | ||||| ||||||| ||||||||| ||| | | |||| Sbjct 14904 GCGGTGCTTCTCCAGCATGTCCACACCGTTGACCTTCTCGACAAAGTTGAGCAGATCGAT 14963 Query 23875 CTCGATGAGGTCGCGCCCGTTCACGGTCAGCTTGTAGTAGCTGGCGTTGGTCGTGATCTT 23934 |||||||| || || | ||||||||||||||||||||| | |||| || || Sbjct 14964 CTCGATGATTTCTTCGCCATCTACGGTCAGCTTGTAGTAGCTGCAGGTGGTGGTCATGGA 15023 Query 23935 GAATTTAGTGTCTTCCTTCGCCTTCGCGGTGCCCATGTCGATCTCTTCGTGGCGGCCCTT 23994 | || |||||| || | || || |||||| ||||| |||||| ||||| Sbjct 15024 GTGTTCAGTGTCCTCGCCGGGCTGGGCATCGCCCATCTCGATGGTTTCGTGACGGCCACG 15083 Query 23995 CACTACCACTTCGATCTGGTCGTGCTTCT--TGCTGTCCTCGCGACGATAGCCGCCGGCG 24052 ||| |||||||| | | | | |||| || |||| || | | || ||| | | Sbjct 15084 CACAACCACTTCCACATTGCTGA-CTTCGCCTG-TGTCGTCTTGCTGGTAAGGGCCAGAG 15141 Query 24053 AAGCGCAGCAGCACGCCGTCGTGCTGTACGGCGCCGTACTGTTCGAGC-ACTTC-GACCA 24110 || ||||| ||| | | | | || |||||| |||| || | || || | Sbjct 15142 AATCGCAGGGCCACACTGGAGGCGTTGACCGCGCCGAACTGACGCAGAGAGATCAGATC- 15200 Query 24111 TGAAGCCGCCGCACGTCCACTCGAGCTGGA-GC--TCTTCGC---TGCCGTAGTCGATTT 24164 || ||| ||| | |||| |||| ||||| || || ||| |||| ||| || Sbjct 15201 -GAGGCCACCGGTCTTCCATTCGAACTGGATGCCGTCGTCGGACATGCCCAGGTCAGCTT 15259 Query 24165 TCACGGGGCCGGTCATGCCGCTGCCCTGCCACGCTTCCATCTTGCGCTTGAGCTTCGGAA 24224 | || ||||| ||||||||| ||| | |||||||||||||||| ||| || | Sbjct 15260 TGACCGGGCCATTCATGCCGCCGCCGCGATACGCTTCCATCTTGCGGCCGAGGGAGGGCA 15319 Query 24225 GATTGAGCTCTTCGACTTCGCCCA--CGA---AGTTCGCGCCGTTGTGAAAGACGTTGAA 24279 | |||| |||||| || | ||| || | ||||| | || | ||||| Sbjct 15320 GGGTGAGG-----GACTTCACCAAGCCGAGATAGCTGTTGCCGTCATTGAACAGGTTGAG 15374 Query 24280 GCCCTTCAGTTTTCGAGGCATACCCATTGCATTTGACTCC--------TGTT-------A 24324 | || || || |||||||| |||| || | |||| |||| | Sbjct 15375 GTTTTTGAGCTTGCGAGGCATTGCCATGGCGGTGTTCTCCGGGATACGTGTTCAGGGTGA 15434 Query 24325 GCCCGCCACGCGCG-----CCGG----------------------GAAATCGGCGAGGAA 24357 | | || |||| | |||| ||| ||| ||| | Sbjct 15435 ACTCCCCTCGCGGGGAGACCCGGTTTAGCTGCTGATGCCCTTGGCGAAGTCGATCAGGTA 15494 Query 24358 GCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGAACCGGCGTGTAGTC 24417 ||||||||||| |||||||| | || | ||| || ||||| || || |||||||| Sbjct 15495 ACGGTCGGTGATTCGCTGGCGGAAGGTGAGGTCTTCAAGTGGCGGCACGGGGGTGTAGTC 15554 Query 24418 GTAATCGATGTACGCCTTGCCGGACGCGAGAATGTCGGCCGTGTTC--GGC-TCCGGATC 24474 |||||| | | |||||||| | ||| |||| ||||| | | ||||| | Sbjct 15555 GTAATCAAGCCAGAGCTTGCCGGCCTTGAGGGTGTCTTTGGTGTTGATGTCGTCCGGGT- 15613 Query 24475 GATCCACGCGCTACCGCCGATCAGGTAGCCGTTCGCGACCTGCTGCCGAAACCAGCCGTT 24534 |||| || ||||||||||||||||| | | | || || | | | || | Sbjct 15614 --TCCAGCAACTGCCGCCGATCAGGTAGCCCTGGGATTTCAACTCGCGCATCTTGGCGCT 15671 Query 24535 GATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCGTCGACGACGGGCAT 24594 | || ||| || | |||||| | || || | | || |||| ||| || | ||| Sbjct 15672 TACGCCTTCGACCAGGTCGCGTACCAGGGAGGCGTGCATAGGGCGGTCAACTGCCCACAT 15731 Query 24595 CTGCGCTTCGGCGATCGAATCGCCGGCCACCTGAGCGGTGCGCGTGTAGTTCTCGAACGC 24654 ||||||||| | || | || || | ||| |||||||| |||||||| ||||| || Sbjct 15732 GTGCGCTTCGCCCATGGTGTCCGCGAGGATCTGCGCGGTGCGGGTGTAGTTTTCGAAGGC 15791 Query 24655 GAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACCGGAAGCCGTTGCGGTTCAC 24714 |||| ||| || || ||| ||||| |||||||| || || |||||| ||| | Sbjct 15792 GAACAACGGGTCATCACTGCAGGTGCGGCTACCCCAGAAGCGAAAACCGTTGGCGTTGAT 15851 Query 24715 GAGCGTCGTCACTTCGT-GCTCGTTCAGGTAGCCCGCATCGGTCGCCGGGTCCTGCAAAT 24773 || || || || |||| ||| ||| |||||| || ||||| || |||| |||| || Sbjct 15852 CAGGGTGGTGACGTCGTTGCT-GTTGAGGTAGTTGGCGTCGGTGGCTGGGTTTTGCAGAT 15910 Query 24774 CCCACGACACGTCGGCGCTGATGCCGGACACGCCGTTCACGACGACATTCGAAATCGTCT 24833 |||| |||||||||||||||| |||| |||||| ||||| | || || || | || | Sbjct 15911 CCCAGAACACGTCGGCGCTGATACCGGTCACGCCACTCACGGCCACGTTGGACAGGGTTT 15970 Query 24834 TGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCCGGCGGCGATCGCCGGCGCCG 24893 | ||||| || | || | ||||||||| ||||| | |||| |||| ||| |||| Sbjct 15971 TATGCCAACCCGTCTCTTGGTCGATCTTGGCGCGAAGGCCGAGGGCGCGGGCCACGGCCG 16030 Query 24894 GGATGACAGCCGTCGAGTTCGTCGTGTCGTCCCAGCCGAGCCAGTCCGGCCAGATCACCA 24953 | || ||| ||| || ||||||| || |||||||||| ||||||| Sbjct 16031 AAGCGCTGGCGGTCTTGTTGGTGACAGTGTCCCAGTTCAGGAAGTCCGGCCAAATCACCA 16090 Query 24954 TGATTTCGCGTTGGCCGAACTGCTTGCGGTACGCGGCGGCTTCTTCCTTCGTTTTGCAG- 25012 | |||||||| ||||| | || ||||||||| | | |||||||| ||||||||| Sbjct 16091 TCATTTCGCGGGCACCGAAGTTCTCGCGGTACGCCACTACCTCTTCCTTGGTTTTGCAGT 16150 Query 25013 -CCGGACGCCGACACATAGGCCATCGCGCGCAGCGACTGCGCGGTCGCCGCGAGCGCGGC 25071 || | ||| || || || | |||||||| | ||| | || |||| |||| Sbjct 16151 TCCAGGCGC--TTACGTATGCAAAGGCGCGCAGGTCTTTGGCGATGGCGCCGAGGGCGGT 16208 Query 25072 CGCCACCGGCTGCGTATCGAGGCCGGGCGCCGCGAGAATGCGCGGCTTCACGCCGA-GCG 25130 || || ||| | |||||||| ||| | | || || ||||| ||| ||| | ||| Sbjct 16209 GGCTACTGGCAAACTGTCGAGGCCTGGCACGCCAAGGATACGCGGAGTCATGCCCACGCG 16268 Query 25131 CACCCTGCGCGGCGAGCAGCGCCTTGATGCCCGTGTACTTGCCGTCCGGCGTCACGGTGC 25190 || || |||||||| || || ||||| ||||| | ||| || || || Sbjct 16269 TGATTTG-GCTGCGAGCAGAGCTTTCATGCCGGTGTATTGACCGGTTGGTGTTGTACCGC 16327 Query 25191 CGAT---GACGTTCGAGGTCGTCTCGTCGGCGTCCTTGCCTTCGGCGACGCGCACGACG- 25246 | || | || ||| |||||| | | |||| |||||| ||| || || ||| Sbjct 16328 CAATCAGGGCGCTCGTAGTCGTCGCTT---CGTCAGCGCCTTCTTTGACCCGTACCACGA 16384 Query 25247 -ACGGTCAGCGGCTTCGTCTGCTTGCCGATCGCGT-CGAGCGTGCGGCGCAGCGTGCCTT 25304 | || | ||||| ||||| | | |||| | | | || || || ||| ||||| | Sbjct 16385 TAACGTAA--GGCTTGGTCTGGTCGGCGATGCCTTGCAGGCTGGCAGC-CAGGGTGCCCT 16441 Query 25305 TCTTGCCGGCCTTGCCGAGCGCCGCGACGACGTTCGTCAGCAGCACGGGCGTATTGAGCG 25364 | |||||||||||||| || | ||||| || | || || || || | || | Sbjct 16442 TGACGCCGGCCTTGCCGACGGCGGTTTGCACGTTGGTGATGAGGACTGGAGTGTCCAGAG 16501 Query 25365 GAAACGCGCTCGCGTCAGCGTCGGCCGCCGTGCAGACGACGCCGAGCACGGCCGTCGACA 25424 | || || | ||| || || | || ||||| || | ||||| || || || | | Sbjct 16502 GGAAAACGAGTGGGTCCGCATCTTCAGCGGTGCAAACCATGCCGATGACTGCGGTGGGAA 16561 Query 25425 CTGAGCGAATCGGGCGGCCGCCTTCGTTGATTTCGATGACGCGTACGCCGTGGTGGTAAT 25484 | |||||| |||||| ||| ||||||| ||||||||| || ||||||||| | |||| Sbjct 16562 TAGTGCGAATGGGGCGGGTGCCGTCGTTGAGTTCGATGACCCGCACGCCGTGGAGATAAT 16621 Query 25485 C 25485 | Sbjct 16622 C 16622 >seq3063309 Length=1409 Score = 127 bits (140), Expect = 5e-25 Identities = 423/648 (65%), Gaps = 30/648 (5%) Strand=Plus/Plus Query 3249 CGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTC 3308 ||||||||||||||| || ||| | || ||||| |||||||| |||| ||| || Sbjct 3 CGCAACATCCTGAAAAGCCGCCAGGTGGGCCTGACGTACTACTTCGCCGGCGAAGCGTTC 62 Query 3309 GTCGACGCCCTCGACACCGACCGTAATCAAATCTTCCTGTCGGCGAGCAAGGCTCAGGCG 3368 | |||||| | |||| | || || | ||||||||||| ||| | ||| || Sbjct 63 ATGGACGCCGTGCTGACCGGCGACAACCAGGTGTTCCTGTCGGCCAGCCGCTCGCAGTCG 122 Query 3369 CACGTCTTCAAGCAG-TACATCACGCAGTTCGCGCGCGCGGCGG-CCGACATCGAGCTCA 3426 | | ||| |||| ||||||| ||||| || || | || |||||||||||| | Sbjct 123 GAAATTTTC-CGCAGTTACATCATCCAGTTTGC-AAAGCAGTGGTTCGACATCGAGCTGA 180 Query 3427 CGGGCGATCCGATCATCTTGCCGAGCGGCGCGACGCTGTACTTCCTGGGGACGAACGCGC 3486 | ||| | ||||||| | | |||||| |||| ||| || ||| || Sbjct 181 CCGGCAACCCGATCACGCTCAGCAACGGCGCCGAGCTGCGTTTCTTGTCGACCAATAGCA 240 Query 3487 GCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAATACTTTTGGGTTCCGAAGT 3546 ||||||| ||| ||||| ||| || ||||| |||| || || |||||| | | | | Sbjct 241 GCACCGCCCAGGGCTACCATGGCCACGTCTACGTCGATGAGTATTTTTGGATACGTGACT 300 Query 3547 TCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCACAAGCGCTGGCGCAAGACTT 3606 || | | || | || || ||| | ||||| | |||||| |||||||| || | Sbjct 301 TCGACAAACTCAGCACCGTGGCCAGTGCCATGGGCACCCACAAGAAGTGGCGCAAAACCT 360 Query 3607 ACTTCAGCACGCCGTCCAGC---GTCACGCACGAGGCGTACGCGTTCTGGAGCGGCGCGC 3663 |||| || || ||||| ||| ||||| | |||||| |||||||| |||| | Sbjct 361 ACTT---TTCGACGCCCAGCGCAGTCTCGCACCAAGCGTACCCGTTCTGGTCGGGCGAGG 417 Query 3664 A----CGCGAACCGCGGCCGCGCC--GCGGGCGAGCGCATCCAGATCGACACGAGCCACG 3717 | ||| ||| || |||| | | ||| ||| || | | || || Sbjct 418 AATTCCGC-AACAGCAAGCGCGGCAAGAAGGCCGGCGGCACCTGGCCCAC--------CG 468 Query 3718 AGGCGCTCGTGCGC----GGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACC 3773 ||||| || | | | ||| |||||| |||| || ||||| | | | | ||| Sbjct 469 AGGCG-TCATACACCCAGGGCGCATTGTGCCCCGACGGCCAATGGCGCAAAACCATCACC 527 Query 3774 GTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGAGCTGCGCCGCGAG 3833 || ||| || || || ||||||||||| ||||||||| |||| | |||| | ||| Sbjct 528 CTGGACGACGCCATAGCCGGCGGCTGCGATCTGTTCGACCTCGAGCAACTGCAGCTGGAG 587 Query 3834 TACAGCGCCGAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCGAC 3881 ||| || || ||||| | | ||| || ||| ||||||||||| Sbjct 588 TACGACGAAGACAAATTCCAGCAGCTGTTCTACTGCAAGTTCATCGAC 635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112984796003464