Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_009236.1
Length=36690
Score E
Sequences producing significant alignments: (Bits) Value
seq3088503 488 1e-133
seq3088488 381 1e-101
seq3063309 127 5e-25
>seq3088503
Length=21467
Score = 488 bits (540), Expect = 1e-133
Identities = 1025/1532 (67%), Gaps = 14/1532 (1%)
Strand=Plus/Plus
Query 2933 CGTCGAGCGCATCGAGGCATCGCTCGAAGTACGCCTGATGGTGTTGATCGCGAAGGAGAA 2992
|||||||||||||| | |||| |||| || || || | ||||| ||||| |
Sbjct 9938 CGTCGAGCGCATCGGCGGGGCGCTGGAAGCGCGGTTGGTGCAGCTGATCCTCAAGGAAAG 9997
Query 2993 GAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGCCAAGTCGAGCGGCTCGC 3052
||| ||||| ||||| ||||||||| || ||||| ||||||| | || || | ||
Sbjct 9998 CAAGAGCGGCGGGGACTTCAAGGAAATTGATCTGCTGCACCGCCAATTGGAACGCCAGGC 10057
Query 3053 GCGCGTGC-GCAAGTACGACGAGACGGGGAAGGAATCGGACCTGAACCCGAAGATTGCGT 3111
| | | || | | | | ||| | ||| | || || ||||| || | ||
Sbjct 10058 CAGAATTCAGCGCTTTCAGGGCGGCGGT-ACCGAAACCGAGCTCAACCCTAACCTGGCTA 10116
Query 3112 CGCGCAACGCCGGCCCGAAACGCCGTGCGCCGCGCAACGAAATCAGCGACGAGCAGCACA 3171
||||||| || ||||| | || ||||| |||||||| |||||| |
Sbjct 10117 AACGCAACGAGGGTCCGAAGAAAAAGACCCCAAAAAACGATATCAGCGAAGAGCAGATCG 10176
Query 3172 AGCGCATCATCGAAGCGTTCCGCGATTCGCTGTT-CGACTATCAGAAAGTCTGGTATCGG 3230
||| | |||||||| ||| |||||| |||||| ||||||| |||||| |||
Sbjct 10177 AGCTGTTGCGTGAAGCGTTTATCGACG-GCTGTTTCGACTACCAGAAAGACTGGTACCGG 10235
Query 3231 AACGGCGATCAGCGCACGCGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTAC 3290
||| |||| || || ||| |||||| ||| ||||||||||| ||||| | |||
Sbjct 10236 GCTGGCAATCAACGGACTCGCGTCATCCTCAAAAGCCGGCAGATCGGCGCGACCTATTAC 10295
Query 3291 TTCGCGCGCGAGGCGCTCGTCGACGCCCTCGACACCGACCGTAATCAAATCTTCCTGTCG 3350
|| || ||||||||| | | || || || || |||| || ||||| |||||||||||
Sbjct 10296 TTTGCCCGCGAGGCGTTTCTTGATGCGCTGGAAACCGGGCGCAATCAGATCTTCCTGTCC 10355
Query 3351 GCGAGCAAGGCTCAGGCGCACGTCTTCAAGCAGTACATC-ACGCAGTTCGCGCGCGCGGC 3409
|| || || || | | || ||||||| | ||| || || || | ||
Sbjct 10356 GCATCGAAAAACCAAGCCTATCTGTTTCGCGGGTACATCCAGGCATTT-GCCCGTGAGGT 10414
Query 3410 GGCCGACATCGAGCTCACGGGCGATCCGATCATCTTGCCGAGCGGCGCGACGCTGTACTT 3469
|| ||||||| ||||| ||||| ||| | ||||| | |||||| ||||| ||
Sbjct 10415 TATCGGTGTCGAGCTGACGGGGGATCCCATCGTATTGCCCAACGGCGCCGAGCTGTTTTT 10474
Query 3470 CCTGGGGACGAACGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAATA 3529
||| || || || ||||| ||||| ||| ||||||||||| ||||||||||||||||
Sbjct 10475 CCTCGGTACCAATGCGCGTACCGCCCAGGGCTACCACGGCAATTTCTACTTCGACGAATT 10534
Query 3530 CTTTTGG--GTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCAC 3587
||| ||| |||| ||||| || |||||||||||||| || |||||||| ||||||
Sbjct 10535 CTTCTGGACGTTC--AAGTTTGAGGAACTGAACAAGGTCGCTTCGGGCATGGCCATGCAC 10592
Query 3588 AAGCGCTGGCGCAAGACTTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGTACGCG 3647
||| |||||||| || |||||| |||||||||||| | | || ||||| ||| |
Sbjct 10593 AAGAAGTGGCGCAAAACCTACTTCTCGACGCCGTCCAGCATGGCCCATGAGGCCTACACC 10652
Query 3648 TTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGATCGAC 3707
||||||| ||||| || | ||| || | |||| | | || | || |||||
Sbjct 10653 TTCTGGACCGGCGAGCGCTTCAACAAGGGTAAGCCAGCGGCGCAACACACCAAGGTCGAC 10712
Query 3708 ACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATC 3767
||||| ||||||| | || ||| ||||||||| | |||||||||||||
Sbjct 10713 GTTTCCCACGGGGCGCTCCAACAGGGGCGGTTCTGCGAGGACCGGTTGTGGCGGCAGATC 10772
Query 3768 GTGACCGTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGAGCTGCGC 3827
|| ||| | || || || | |||||||| || ||||||||||| || ||| ||||
Sbjct 10773 GTCACCATCCTGGACGCAGAGCACGGCGGCTGTGATCTGTTCGACATTGAGGAGTTGCGT 10832
Query 3828 CGCGAGTACAGCGCCGAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCGACGATTCG 3887
|| ||||||||| | |||| ||||| || ||| | ||||| |||| | |||||| |
Sbjct 10833 CGGGAGTACAGCCCTGAGGCGTTCGCCAACCTGTTGATGTGTGAGTTTGTTGACGAT--G 10890
Query 3888 CTGTCGG--TGTTCAAGCTGTCGGACCTGCAACGCTGCATGGTCGACTCGTGGGAAGAAT 3945
| | | | || | || || ||||| |||||||||||||| |||| ||||
Sbjct 10891 GAGCCAGCATCTTTCCGTTGGCGTTGCTGCAGAGCTGCATGGTCGACAGTTGGGTTGAAT 10950
Query 3946 GGGCGGACGACTTCTCGCNNNNNNNNNNNNNNNCGTTCGGCTATCGCGAGGTGTGGGTCG 4005
|||| || |||| | || ||||||| | || |||| ||| |||
Sbjct 10951 GGGCAGAGGACTACAAGCCATTCGCCATGCGGCCGTTCGGTGACCGTCAGGTATGGATCG 11010
Query 4006 GCTACGATCCGGCGCTCACGGGCGACTCGGCGGGGCTCGNNNNNNNNNNNNNNNNNNNNN 4065
||||||| || ||| || || || | | ||||| |
Sbjct 11011 GCTACGACCCAGCGGAAACCGGTGATTGCTCCGGGCTGGTGGTGGTTGCGCCGCCGCTGG 11070
Query 4066 NNNNNNNNNNNNCCTTCCGCGTGCTCGAACGTCATCAGTTCCGCGGCAACGACTTTGAGG 4125
|||||||| || || || || || ||||| |||| ||||||| ||
Sbjct 11071 TACCGGGCGGCAAATTCCGCGTCCTGGAGCGGCACCAATTCCGGGGCATGGACTTTGCGG 11130
Query 4126 AACAGGCCGCGGCAATCGAGGCGATCACGCAGCGCTACAACGTCGGCTACATCGCGATCG 4185
||||| || ||| | || | |||||| || ||| |||| ||| |
Sbjct 11131 CCCAGGCGGCATTTATCAAAAACGTCTGCGACCGCTACTGGGTGACCTATATCGGGATTG 11190
Query 4186 ACACCACGGGCATGGGGCAAGGCGTCTACCAGCTCGTGCGCAAGTTCTTCCCGGCCGCCG 4245
| ||| || |||| ||||| ||||| |||||| ||||||||||||| |
Sbjct 11191 ATGTCACCGGGCTGGGTAGCGGCGTGGCGCAGCTGGTGCGCCAGTTCTTCCCGGCTGTGA 11250
Query 4246 TCGCGCTGAACTACTCGCCCGAGGTGAAAACCCGCCTCGTGCTCAAGGGCCAGTCCGTCG 4305
| | | | ||| |||||||| || ||||| ||||| ||||| |||| | | |||
Sbjct 11251 CCACCTTCAGCTATTCGCCCGAAGTCAAAACACGCCTGGTGCTGAAGGCCTATGACGTGA 11310
Query 4306 TCCGGAACGGCCGCCTGCAATTCGACGCGGGCTGGACCGATCTGGCGGCGGCGTTCATGG 4365
||| |||||||| ||| | |||||||| || |||||||| ||||| | || | ||||
Sbjct 11311 TCCATAACGGCCGGCTGGAGTTCGACGCCGGGTGGACCGACATGGCGCAGTCGATGATGG 11370
Query 4366 CGATCAAACAGACGATGACGGCGAGCGGCCGTCAGGCGACCTACACCGCTGGCCGTACCG 4425
||||| ||||| | || || |||| || ||| ||||||||||| || || | ||
Sbjct 11371 CGATCCGCAAGACGGTCACCGCAGGCGGTCGCCAGTACACCTACACCGCAGGGCGCAACG 11430
Query 4426 ACGAGACGGGCCACGCCGACCTGGCGTGGGCG 4457
|| | || ||||| ||||||||||| ||||||
Sbjct 11431 ACAACACCGGCCATGCCGACCTGGCCTGGGCG 11462
Score = 306 bits (338), Expect = 8e-79
Identities = 516/726 (71%), Gaps = 22/726 (3%)
Strand=Plus/Plus
Query 776 GCCAGTTCGATGTTTTCGGCCACGCAGCCGCAACCGAAGTCTTCGACCACGTAGGCGTCG 835
||||||||||||||||| || | || | || | | |||||| | ||||| |||||
Sbjct 7747 GCCAGTTCGATGTTTTCAGCGAGCGAGGCACATTCCAGGTCTTCAATGACGTATGCGTCA 7806
Query 836 TTCGACGATTCGTAGTTCTCGATGCGGTCGCGTTCCGGCACTTCCTTCAGCG-TGCGCCG 894
|| ||| |||||||| ||||||||||| || | |||| | | | || |||| ||
Sbjct 7807 TTGACCGACTCGTAGTTTTCGATGCGGTCACGCTT-GGCATTGTCGACGACGGTGCGGCG 7865
Query 895 GCGCGCGCCTTCCTGGTAGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCG 954
||| ||||||||| ||||||||||||| ||| |||||| ||||||| || | ||||
Sbjct 7866 GCGGCTGCCTTCCTGCCAGTAGATCGACAGGTTTTCCAGCTTGGTGACCAGCAACCCGCG 7925
Query 955 CTTCGGGAAGAACGGCACGCGCACGGCCGGCAGATTGCCGATGCGCTTCTGGCTCACGAT 1014
| ||||||| | |||||||||||||| |||| |||||| | |||||| || || ||
Sbjct 7926 CGGCGGGAAGTAAGGCACGCGCACGGCTGGCAAATTGCCCAAGCGCTTTTGACTGGTGAC 7985
Query 1015 CAGATCGGCCGCGAGCCGCTCGGTCGGCGCCTGCGTC-GCGTTGACGATCGGGAAATACT 1073
| |||||| || ||| || |||||||| | ||| ||||| ||||||||||||||
Sbjct 7986 GATATCGGCGGCCAGCATTTCAGTCGGCGCGT-TGTCTTTGTTGATGATCGGGAAATACT 8044
Query 1074 TGTCGTGCAGCAGCTCGCGGCCGCAGATCACGACGAGGCCCGTGTCTTCCTGGAACCACG 1133
||||| |||||| | ||| ||||||||||| || || | | |||||||||| ||||||
Sbjct 8045 TGTCGGCCAGCAGTTGGCGACCGCAGATCACCACCAGATCAGGGTCTTCCTGGTACCACG 8104
Query 1134 GGTCGATCATCGACGACACGATATCCATCACGAGCGCGTCGAGGTTCTCGTAATC--GCC 1191
| | || | | ||| || | || || ||||||||||| | | || |
Sbjct 8105 GCGCAATGAACTCTTCCACCATGCTGAATACCAGGGCGTCGAGGTTGGTGAAGTCTTTAC 8164
Query 1192 CGCCTTGCCGATGAGCACCTTGCCGGCCTGCTTCG-CGCCTTCGTGCAGCACGC--GCTG 1248
|| | |||||| | ||||||| ||||| | |||| | || |||| || |
Sbjct 8165 CGGC--ACCGATGGTGATTTTGCCGG-AGCCTTCGACCACTTCCTTCATGACGCGGGCGG 8221
Query 1249 CGCTGCGCGCTCGCGGTACTGTTGCAGCCAGCCGATGTTCACGTCCTGCAACAGCGGGTT 1308
|| | || |||| || |||||||| || ||||| |||||||| || || ||
Sbjct 8222 CG-TTTTCG-GCGCGCATCTTCTGCAGCCAACCAATGTTGACGTCCTGGCGAAGTGGATT 8279
Query 1309 --TGCCTGACGGTCGGTCGTCGCGGC-CGCCTTCACGCCGTTCCAGCCGATCATGATGCG 1365
|| ||| ||| || ||||||||| || | | ||||||||||| ||||||| ||||||
Sbjct 8280 GGTGGCTG--GGTTGGACGTCGCGGCGCGAC-TGACGCCGTTCCAACCGATCAGGATGCG 8336
Query 1366 ATCGAGCGCCCCCTGGTTGAGGATCACGTCGCGGATGCGCTGCTGGAAGTCGGCGAACTT 1425
|| |||||| | || ||||| |||| || || || ||||||||||| ||||||
Sbjct 8337 GTCCAGCGCCTGGCGTTTCAGGATGGCGTCACGAATACGGGCCTGGAAGTCGGGGAACTT 8396
Query 1426 CGCCCACATGTCGAGCTTGC-GATACGGAATCGCCGTGTCGTAGTCGGTCTTCTCGCAGC 1484
|||||| || | ||||| | ||||| | || ||| ||| ||||| | ||||
Sbjct 8397 GGCCCACGCATCCAACTTGCTGTAACGGAGGTG-GGTATCGAAGTTGGTCTGCGAGCAGA 8455
Query 1485 GGTAGC 1490
|||||
Sbjct 8456 AGTAGC 8461
Score = 134 bits (148), Expect = 3e-27
Identities = 115/142 (81%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 5054 CAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCGGCCTGGCTGAACGAA 5113
|||||| | |||||| |||| |||| | || | |||| ||||| | ||| ||||||
Sbjct 12035 CAGGAGATTTATGGCTTGCCGGAGTGGATTAGTGCCTTGCAGTCGGCGTTGCTCAACGAA 12094
Query 5114 TCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCACGCCGGCTTCATCCTG 5173
||| | ||| ||||||| |||||||| |||||||| ||||| |||||||||||||| ||
Sbjct 12095 TCGGCCACGTTGTTCCGCCGCAAGTACTACGAGAATGGCAGTCACGCCGGCTTCATTCTC 12154
Query 5174 TACATGACCGACGCCGCGCAGA 5195
||||||||||| ||||| ||||
Sbjct 12155 TACATGACCGATGCCGCACAGA 12176
Score = 91.5 bits (100), Expect = 3e-14
Identities = 81/100 (81%), Gaps = 6/100 (6%)
Strand=Plus/Plus
Query 35824 GCCGAGCTCGGCGAGGCCGGGGTTCGCTTCGAGCACGGCTTC---AACCGTGCCCGCCGT 35880
|||| | ||||| ||||||||||| ||||| |||||||| || ||| ||| || ||
Sbjct 6343 GCCGTGGTCGGCCAGGCCGGGGTTGGCTTCAAGCACGGCCTCGGTAAC---GCCGGCAGT 6399
Query 35881 GCTGCCGTAGTGCCGCCAGCACAGCGCGTCGAGCGTCTCG 35920
|| |||||||||||||||||| |||||||||| || |||
Sbjct 6400 GCGGCCGTAGTGCCGCCAGCAAAGCGCGTCGACGGTGTCG 6439
Score = 87.8 bits (96), Expect = 4e-13
Identities = 234/352 (66%), Gaps = 12/352 (3%)
Strand=Plus/Plus
Query 34332 TACGCGCGGTCGAGCTTCACGTCATACAGGTTGATCGCGAAT--TCCGGGCCGTTGTAGC 34389
|| ||||| | |||||| ||| || || || |||| || ||||| |||||||||
Sbjct 4799 TAGGCGCGCTGGAGCTTGGTGTCGTAGAGATT--TCGCAGATAGTCCGGCCCGTTGTAGA 4856
Query 34390 CTTCCGCGAACGCTGCCCACTTCCGGGCACGAAGCGCCGCTAGCAGCTTCTTGTCGGCCG 34449
| |||||| ||||| || |||| || ||| ||||| | |||||
Sbjct 4857 GCTTGGCGAACTGAGCCCATTTGCGGGTTTTCAGGGCCTTGTGCAGCACCGGGTCGGTTT 4916
Query 34450 CGACGTACCGCACGAACGCGTCGAGGTGCTCGGCTTCGCCCA-GCTCCATACGGGACACG 34508
||| | | || ||| || ||||| || | | ||| || |||| | | | |||
Sbjct 4917 CGATGAAGCGGGTGAAGGCCTCGAGCTGTTGCGATTCACCGGCGCTCATTGCCGC-CACA 4975
Query 34509 AATTCGTCGACGCTCGCGTAACCCAGGCGTTTCCAGTGATACGCCATGATCTGGAACGCG 34568
||||| | ||||| | ||| || || || ||||| ||| | |||| |||||||| |||
Sbjct 4976 AATTCCTGCACGCTTGTGTATCCGAGACGATTCCAATGAAAGCCCATAATCTGGAAAGCG 5035
Query 34569 CCCCAGCTCGCGGACTCGTAAGCGGATGCCGCGTCGAT---GCGCGCCGCAGTGTCGAGC 34625
|||||| || ||||| | |||| | | ||||| ||| ||| || | ||
Sbjct 5036 CCCCAGGAAGCCGACTCCAAGGCGGCGGTGTCATCGATCAGGCGGGCCATAG---CTAGT 5092
Query 34626 CGCACGTATTCGGCGGCGCCGCCCTGGTAGCCGCCGCGCTTCGGGTTGACGA 34677
|| || |||||||| |||||| ||| || ||| | |||||||||||||
Sbjct 5093 CGTTGGTGTTCGGCGGTGCCGCCGATGTATCCACCGGGTTTCGGGTTGACGA 5144
>seq3088488
Length=17142
Score = 381 bits (422), Expect = 1e-101
Identities = 1475/2281 (65%), Gaps = 131/2281 (6%)
Strand=Plus/Plus
Query 23286 CTACGTATCCGGGCGCGCTCGCGCCAGTCCATCAATTCGGCCAGGGAGAAGGCGGCCATA 23345
|| |||| || |||||| |||||||||||||||| || |||| || |||||
Sbjct 14392 CTCCGTACCCTGGCGCGTTCGCGCCAGTCCATCAGGTCTTGCAGGCCCAACTGATCCATA 14451
Query 23346 TCGTGCGGCGTCCAGCCAAACACCGTCGCGATATCGGCCATCGCGTCTTCTACGCGGGCC 23405
|| ||| | |||| ||| ||| || | ||||||||| ||||| ||||||||
Sbjct 14452 TCAGCCGGTGCCCAGTGAAAAACCACAGCCAGATCGGCCATGGCGTCCTCTACGCGACGA 14511
Query 23406 GGGACTCCATGCTCGCTTTCAGCGCCTTCGGCATCAAAAAACCGGCGAAGATACCCCCCA 23465
|||| | ||| | | ||| || |||| ||| ||||||||||| || | | | ||
Sbjct 14512 GGGA-TGCATCC--GTCTTCGCCGACTTCTGCAACAAAAAACCGGAGATTTTGCTGCTCA 14568
Query 23466 ACGCCACGAGGTCGGCCGGGTCCATGCCGGCCACGTCGAACTCGGTCAGCGTCGGCGTGC 23525
|||| ||||||||||||||||||||||| || |||| |||| || | |||||||
Sbjct 14569 GGGCCAGTAGGTCGGCCGGGTCCATGCCGGCGACTTCGACGACGGTGAGGCTTGGCGTGC 14628
Query 23526 TGATGCGCGGCAACACCTTGCGCAGCGCGTCGACATCGAGATTCACGAGTGCGGCGAGCG 23585
|||| ||||||| |||||| ||| | ||||||| | | || || | | ||
Sbjct 14629 TGATACGCGGCAGAACCTTGATCAGGCTGGCGACATCCATCTGCAGCAGCTCTACCAGGC 14688
Query 23586 ACGTGCCGCGCAGCGCGCCCGCGGCCGGCTTGCGCAACGTCAC-CTGCGTGATGGTC-TG 23643
| |||||| | | |||| | | |||||||||| || | ||| ||||| | ||
Sbjct 14689 TCACGCCGCGTAACTCGCCGGAGTTGGGCTTGCGCAGTGTGATGCTGT-TGATGCTGGTG 14747
Query 23644 CCCTTCGCGCTCGATCGGTGTGTCGAGCGTGTGCGTGTTCTCGTCGGGC-GCGGCGTGGC 23702
| |||| ||||||||| ||||| || ||||||||||||| | || || ||
Sbjct 14748 GTCC-CGCGACGGATCGGTGTATCGAGAATGACGGTGTTCTCGTCGGCCAGCTGCT--GC 14804
Query 23703 CCGTC--GTT--TCGATGTGAGCGGTATCGATGG---TCG-TCATGGTGTTTCCTGGGTT 23754
|||| ||| ||| || || | | || | ||| || ||||| || ||||
Sbjct 14805 ACGTCAGGTTGTTCGGTGGTTTCGTTCTTCATTGGATTCGCTCCTGGTGATTAAAGGGT- 14863
Query 23755 GGATGTGAAATTGGACTGGCCCGCGCTCGACGCGGGCGTCGATTACAGGCCCATCGCGCG 23814
|||| || || |||| | | ||| | | | | |||||| ||
Sbjct 14864 -GATG----AT------------CGATCGAGG-GTGCG--GGTCAGATGCCCATGCCGTT 14903
Query 23815 GCGAAGGTCCGACGCGAGGTCCATGCCGTTGATCTTCTCGACCGCGTTCACGAAGTCGAG 23874
||| | | | | | ||||| ||||||| ||||||||| ||| | | ||||
Sbjct 14904 GCGGTGCTTCTCCAGCATGTCCACACCGTTGACCTTCTCGACAAAGTTGAGCAGATCGAT 14963
Query 23875 CTCGATGAGGTCGCGCCCGTTCACGGTCAGCTTGTAGTAGCTGGCGTTGGTCGTGATCTT 23934
|||||||| || || | ||||||||||||||||||||| | |||| || ||
Sbjct 14964 CTCGATGATTTCTTCGCCATCTACGGTCAGCTTGTAGTAGCTGCAGGTGGTGGTCATGGA 15023
Query 23935 GAATTTAGTGTCTTCCTTCGCCTTCGCGGTGCCCATGTCGATCTCTTCGTGGCGGCCCTT 23994
| || |||||| || | || || |||||| ||||| |||||| |||||
Sbjct 15024 GTGTTCAGTGTCCTCGCCGGGCTGGGCATCGCCCATCTCGATGGTTTCGTGACGGCCACG 15083
Query 23995 CACTACCACTTCGATCTGGTCGTGCTTCT--TGCTGTCCTCGCGACGATAGCCGCCGGCG 24052
||| |||||||| | | | | |||| || |||| || | | || ||| | |
Sbjct 15084 CACAACCACTTCCACATTGCTGA-CTTCGCCTG-TGTCGTCTTGCTGGTAAGGGCCAGAG 15141
Query 24053 AAGCGCAGCAGCACGCCGTCGTGCTGTACGGCGCCGTACTGTTCGAGC-ACTTC-GACCA 24110
|| ||||| ||| | | | | || |||||| |||| || | || || |
Sbjct 15142 AATCGCAGGGCCACACTGGAGGCGTTGACCGCGCCGAACTGACGCAGAGAGATCAGATC- 15200
Query 24111 TGAAGCCGCCGCACGTCCACTCGAGCTGGA-GC--TCTTCGC---TGCCGTAGTCGATTT 24164
|| ||| ||| | |||| |||| ||||| || || ||| |||| ||| ||
Sbjct 15201 -GAGGCCACCGGTCTTCCATTCGAACTGGATGCCGTCGTCGGACATGCCCAGGTCAGCTT 15259
Query 24165 TCACGGGGCCGGTCATGCCGCTGCCCTGCCACGCTTCCATCTTGCGCTTGAGCTTCGGAA 24224
| || ||||| ||||||||| ||| | |||||||||||||||| ||| || |
Sbjct 15260 TGACCGGGCCATTCATGCCGCCGCCGCGATACGCTTCCATCTTGCGGCCGAGGGAGGGCA 15319
Query 24225 GATTGAGCTCTTCGACTTCGCCCA--CGA---AGTTCGCGCCGTTGTGAAAGACGTTGAA 24279
| |||| |||||| || | ||| || | ||||| | || | |||||
Sbjct 15320 GGGTGAGG-----GACTTCACCAAGCCGAGATAGCTGTTGCCGTCATTGAACAGGTTGAG 15374
Query 24280 GCCCTTCAGTTTTCGAGGCATACCCATTGCATTTGACTCC--------TGTT-------A 24324
| || || || |||||||| |||| || | |||| |||| |
Sbjct 15375 GTTTTTGAGCTTGCGAGGCATTGCCATGGCGGTGTTCTCCGGGATACGTGTTCAGGGTGA 15434
Query 24325 GCCCGCCACGCGCG-----CCGG----------------------GAAATCGGCGAGGAA 24357
| | || |||| | |||| ||| ||| ||| |
Sbjct 15435 ACTCCCCTCGCGGGGAGACCCGGTTTAGCTGCTGATGCCCTTGGCGAAGTCGATCAGGTA 15494
Query 24358 GCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGAACCGGCGTGTAGTC 24417
||||||||||| |||||||| | || | ||| || ||||| || || ||||||||
Sbjct 15495 ACGGTCGGTGATTCGCTGGCGGAAGGTGAGGTCTTCAAGTGGCGGCACGGGGGTGTAGTC 15554
Query 24418 GTAATCGATGTACGCCTTGCCGGACGCGAGAATGTCGGCCGTGTTC--GGC-TCCGGATC 24474
|||||| | | |||||||| | ||| |||| ||||| | | ||||| |
Sbjct 15555 GTAATCAAGCCAGAGCTTGCCGGCCTTGAGGGTGTCTTTGGTGTTGATGTCGTCCGGGT- 15613
Query 24475 GATCCACGCGCTACCGCCGATCAGGTAGCCGTTCGCGACCTGCTGCCGAAACCAGCCGTT 24534
|||| || ||||||||||||||||| | | | || || | | | || |
Sbjct 15614 --TCCAGCAACTGCCGCCGATCAGGTAGCCCTGGGATTTCAACTCGCGCATCTTGGCGCT 15671
Query 24535 GATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCGTCGACGACGGGCAT 24594
| || ||| || | |||||| | || || | | || |||| ||| || | |||
Sbjct 15672 TACGCCTTCGACCAGGTCGCGTACCAGGGAGGCGTGCATAGGGCGGTCAACTGCCCACAT 15731
Query 24595 CTGCGCTTCGGCGATCGAATCGCCGGCCACCTGAGCGGTGCGCGTGTAGTTCTCGAACGC 24654
||||||||| | || | || || | ||| |||||||| |||||||| ||||| ||
Sbjct 15732 GTGCGCTTCGCCCATGGTGTCCGCGAGGATCTGCGCGGTGCGGGTGTAGTTTTCGAAGGC 15791
Query 24655 GAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACCGGAAGCCGTTGCGGTTCAC 24714
|||| ||| || || ||| ||||| |||||||| || || |||||| ||| |
Sbjct 15792 GAACAACGGGTCATCACTGCAGGTGCGGCTACCCCAGAAGCGAAAACCGTTGGCGTTGAT 15851
Query 24715 GAGCGTCGTCACTTCGT-GCTCGTTCAGGTAGCCCGCATCGGTCGCCGGGTCCTGCAAAT 24773
|| || || || |||| ||| ||| |||||| || ||||| || |||| |||| ||
Sbjct 15852 CAGGGTGGTGACGTCGTTGCT-GTTGAGGTAGTTGGCGTCGGTGGCTGGGTTTTGCAGAT 15910
Query 24774 CCCACGACACGTCGGCGCTGATGCCGGACACGCCGTTCACGACGACATTCGAAATCGTCT 24833
|||| |||||||||||||||| |||| |||||| ||||| | || || || | || |
Sbjct 15911 CCCAGAACACGTCGGCGCTGATACCGGTCACGCCACTCACGGCCACGTTGGACAGGGTTT 15970
Query 24834 TGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCCGGCGGCGATCGCCGGCGCCG 24893
| ||||| || | || | ||||||||| ||||| | |||| |||| ||| ||||
Sbjct 15971 TATGCCAACCCGTCTCTTGGTCGATCTTGGCGCGAAGGCCGAGGGCGCGGGCCACGGCCG 16030
Query 24894 GGATGACAGCCGTCGAGTTCGTCGTGTCGTCCCAGCCGAGCCAGTCCGGCCAGATCACCA 24953
| || ||| ||| || ||||||| || |||||||||| |||||||
Sbjct 16031 AAGCGCTGGCGGTCTTGTTGGTGACAGTGTCCCAGTTCAGGAAGTCCGGCCAAATCACCA 16090
Query 24954 TGATTTCGCGTTGGCCGAACTGCTTGCGGTACGCGGCGGCTTCTTCCTTCGTTTTGCAG- 25012
| |||||||| ||||| | || ||||||||| | | |||||||| |||||||||
Sbjct 16091 TCATTTCGCGGGCACCGAAGTTCTCGCGGTACGCCACTACCTCTTCCTTGGTTTTGCAGT 16150
Query 25013 -CCGGACGCCGACACATAGGCCATCGCGCGCAGCGACTGCGCGGTCGCCGCGAGCGCGGC 25071
|| | ||| || || || | |||||||| | ||| | || |||| ||||
Sbjct 16151 TCCAGGCGC--TTACGTATGCAAAGGCGCGCAGGTCTTTGGCGATGGCGCCGAGGGCGGT 16208
Query 25072 CGCCACCGGCTGCGTATCGAGGCCGGGCGCCGCGAGAATGCGCGGCTTCACGCCGA-GCG 25130
|| || ||| | |||||||| ||| | | || || ||||| ||| ||| | |||
Sbjct 16209 GGCTACTGGCAAACTGTCGAGGCCTGGCACGCCAAGGATACGCGGAGTCATGCCCACGCG 16268
Query 25131 CACCCTGCGCGGCGAGCAGCGCCTTGATGCCCGTGTACTTGCCGTCCGGCGTCACGGTGC 25190
|| || |||||||| || || ||||| ||||| | ||| || || ||
Sbjct 16269 TGATTTG-GCTGCGAGCAGAGCTTTCATGCCGGTGTATTGACCGGTTGGTGTTGTACCGC 16327
Query 25191 CGAT---GACGTTCGAGGTCGTCTCGTCGGCGTCCTTGCCTTCGGCGACGCGCACGACG- 25246
| || | || ||| |||||| | | |||| |||||| ||| || || |||
Sbjct 16328 CAATCAGGGCGCTCGTAGTCGTCGCTT---CGTCAGCGCCTTCTTTGACCCGTACCACGA 16384
Query 25247 -ACGGTCAGCGGCTTCGTCTGCTTGCCGATCGCGT-CGAGCGTGCGGCGCAGCGTGCCTT 25304
| || | ||||| ||||| | | |||| | | | || || || ||| ||||| |
Sbjct 16385 TAACGTAA--GGCTTGGTCTGGTCGGCGATGCCTTGCAGGCTGGCAGC-CAGGGTGCCCT 16441
Query 25305 TCTTGCCGGCCTTGCCGAGCGCCGCGACGACGTTCGTCAGCAGCACGGGCGTATTGAGCG 25364
| |||||||||||||| || | ||||| || | || || || || | || |
Sbjct 16442 TGACGCCGGCCTTGCCGACGGCGGTTTGCACGTTGGTGATGAGGACTGGAGTGTCCAGAG 16501
Query 25365 GAAACGCGCTCGCGTCAGCGTCGGCCGCCGTGCAGACGACGCCGAGCACGGCCGTCGACA 25424
| || || | ||| || || | || ||||| || | ||||| || || || | |
Sbjct 16502 GGAAAACGAGTGGGTCCGCATCTTCAGCGGTGCAAACCATGCCGATGACTGCGGTGGGAA 16561
Query 25425 CTGAGCGAATCGGGCGGCCGCCTTCGTTGATTTCGATGACGCGTACGCCGTGGTGGTAAT 25484
| |||||| |||||| ||| ||||||| ||||||||| || ||||||||| | ||||
Sbjct 16562 TAGTGCGAATGGGGCGGGTGCCGTCGTTGAGTTCGATGACCCGCACGCCGTGGAGATAAT 16621
Query 25485 C 25485
|
Sbjct 16622 C 16622
>seq3063309
Length=1409
Score = 127 bits (140), Expect = 5e-25
Identities = 423/648 (65%), Gaps = 30/648 (5%)
Strand=Plus/Plus
Query 3249 CGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTC 3308
||||||||||||||| || ||| | || ||||| |||||||| |||| ||| ||
Sbjct 3 CGCAACATCCTGAAAAGCCGCCAGGTGGGCCTGACGTACTACTTCGCCGGCGAAGCGTTC 62
Query 3309 GTCGACGCCCTCGACACCGACCGTAATCAAATCTTCCTGTCGGCGAGCAAGGCTCAGGCG 3368
| |||||| | |||| | || || | ||||||||||| ||| | ||| ||
Sbjct 63 ATGGACGCCGTGCTGACCGGCGACAACCAGGTGTTCCTGTCGGCCAGCCGCTCGCAGTCG 122
Query 3369 CACGTCTTCAAGCAG-TACATCACGCAGTTCGCGCGCGCGGCGG-CCGACATCGAGCTCA 3426
| | ||| |||| ||||||| ||||| || || | || |||||||||||| |
Sbjct 123 GAAATTTTC-CGCAGTTACATCATCCAGTTTGC-AAAGCAGTGGTTCGACATCGAGCTGA 180
Query 3427 CGGGCGATCCGATCATCTTGCCGAGCGGCGCGACGCTGTACTTCCTGGGGACGAACGCGC 3486
| ||| | ||||||| | | |||||| |||| ||| || ||| ||
Sbjct 181 CCGGCAACCCGATCACGCTCAGCAACGGCGCCGAGCTGCGTTTCTTGTCGACCAATAGCA 240
Query 3487 GCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAATACTTTTGGGTTCCGAAGT 3546
||||||| ||| ||||| ||| || ||||| |||| || || |||||| | | | |
Sbjct 241 GCACCGCCCAGGGCTACCATGGCCACGTCTACGTCGATGAGTATTTTTGGATACGTGACT 300
Query 3547 TCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCACAAGCGCTGGCGCAAGACTT 3606
|| | | || | || || ||| | ||||| | |||||| |||||||| || |
Sbjct 301 TCGACAAACTCAGCACCGTGGCCAGTGCCATGGGCACCCACAAGAAGTGGCGCAAAACCT 360
Query 3607 ACTTCAGCACGCCGTCCAGC---GTCACGCACGAGGCGTACGCGTTCTGGAGCGGCGCGC 3663
|||| || || ||||| ||| ||||| | |||||| |||||||| |||| |
Sbjct 361 ACTT---TTCGACGCCCAGCGCAGTCTCGCACCAAGCGTACCCGTTCTGGTCGGGCGAGG 417
Query 3664 A----CGCGAACCGCGGCCGCGCC--GCGGGCGAGCGCATCCAGATCGACACGAGCCACG 3717
| ||| ||| || |||| | | ||| ||| || | | || ||
Sbjct 418 AATTCCGC-AACAGCAAGCGCGGCAAGAAGGCCGGCGGCACCTGGCCCAC--------CG 468
Query 3718 AGGCGCTCGTGCGC----GGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACC 3773
||||| || | | | ||| |||||| |||| || ||||| | | | | |||
Sbjct 469 AGGCG-TCATACACCCAGGGCGCATTGTGCCCCGACGGCCAATGGCGCAAAACCATCACC 527
Query 3774 GTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGAGCTGCGCCGCGAG 3833
|| ||| || || || ||||||||||| ||||||||| |||| | |||| | |||
Sbjct 528 CTGGACGACGCCATAGCCGGCGGCTGCGATCTGTTCGACCTCGAGCAACTGCAGCTGGAG 587
Query 3834 TACAGCGCCGAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCGAC 3881
||| || || ||||| | | ||| || ||| |||||||||||
Sbjct 588 TACGACGAAGACAAATTCCAGCAGCTGTTCTACTGCAAGTTCATCGAC 635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 112984796003464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |