Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq2585192 89.7 4e-13
seq116363 84.2 2e-11
>seq2585192
Length=178
Score = 89.7 bits (98), Expect = 4e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308
|| |||| ||| || || | |||| ||||||||| ||||| || || || |||| |||
Sbjct 17 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 76
Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368
||||||||||||| ||| |||| ||| ||||| ||||| || | | || || || ||
Sbjct 77 ATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 136
Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCAT 20397
|| | ||| || || || || |||||
Sbjct 137 CAGAGGGCGTGGCACGGGGGGAGGGCCAT 165
>seq116363
Length=44347
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308
|| |||| ||| || || | |||| ||||||||| ||||| || || || |||| |||
Sbjct 21697 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 21638
Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368
|||||||||| || ||| |||| ||| ||||| ||||| || | | || || || ||
Sbjct 21637 ATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCTCCACGTAGAACTGG 21578
Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCAT 20397
|| | ||| || || || || |||||
Sbjct 21577 CAGAGGGCGTGGCACGGGGGGAGGGCCAT 21549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424762065433030
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |