Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2585192 89.7 4e-13 seq116363 84.2 2e-11 >seq2585192 Length=178 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || |||| ||| || || | |||| ||||||||| ||||| || || || |||| ||| Sbjct 17 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 76 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 ||||||||||||| ||| |||| ||| ||||| ||||| || | | || || || || Sbjct 77 ATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 136 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCAT 20397 || | ||| || || || || ||||| Sbjct 137 CAGAGGGCGTGGCACGGGGGGAGGGCCAT 165 >seq116363 Length=44347 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || |||| ||| || || | |||| ||||||||| ||||| || || || |||| ||| Sbjct 21697 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 21638 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 |||||||||| || ||| |||| ||| ||||| ||||| || | | || || || || Sbjct 21637 ATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCTCCACGTAGAACTGG 21578 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCAT 20397 || | ||| || || || || ||||| Sbjct 21577 CAGAGGGCGTGGCACGGGGGGAGGGCCAT 21549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424762065433030