Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_009334.1
Length=172764
Score E
Sequences producing significant alignments: (Bits) Value
seq14698 123 3e-23
>seq14698
Length=29873
Score = 123 bits (136), Expect = 3e-23
Identities = 115/146 (79%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920
|||| ||||| || ||||| ||| |||| ||||||||||| || ||||||||||| || |
Sbjct 14200 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 14141
Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980
||||||||||||| ||||| | ||||| ||| || || || || || |||| || |
Sbjct 14140 TGCCACAGGCTGAGAACCATGGGCCTGAGATCAAGGAGCACGTGAACTCACTGGGGGAGA 14081
Query 9981 ATCTAAAGACCCTACGGCTCCGCCTG 10006
| || |||||||| ||||| || |||
Sbjct 14080 AGCTGAAGACCCTCCGGCTGCGACTG 14055
Score = 104 bits (114), Expect = 2e-17
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 9875 TGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCATGCCACAGGCTGAA 9934
||||| ||| |||| ||| ||||||| || ||||||||||| || ||||||||||||||
Sbjct 18876 TGCCAAGCCTTGTCGGAAGTGATCCACTTTTACCTGGAGGAGGTGATGCCACAGGCTGAG 18935
Query 9935 AACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAAATCTAAAGACCCTA 9994
||| | | ||||| ||| || || || || || |||| || || || ||||||||
Sbjct 18936 AACTATGGGCCTGAGATCAAGGAGCACGTGAACTCGCTGGGGGAGAAGCTGAAGACCCTC 18995
Query 9995 CGGCTCCGCCTG 10006
||||| || |||
Sbjct 18996 CGGCTGCGACTG 19007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531378401041440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |