Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq14698 123 3e-23 >seq14698 Length=29873 Score = 123 bits (136), Expect = 3e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||||| || ||||| ||| |||| ||||||||||| || ||||||||||| || | Sbjct 14200 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 14141 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 ||||||||||||| ||||| | ||||| ||| || || || || || |||| || | Sbjct 14140 TGCCACAGGCTGAGAACCATGGGCCTGAGATCAAGGAGCACGTGAACTCACTGGGGGAGA 14081 Query 9981 ATCTAAAGACCCTACGGCTCCGCCTG 10006 | || |||||||| ||||| || ||| Sbjct 14080 AGCTGAAGACCCTCCGGCTGCGACTG 14055 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 9875 TGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCATGCCACAGGCTGAA 9934 ||||| ||| |||| ||| ||||||| || ||||||||||| || |||||||||||||| Sbjct 18876 TGCCAAGCCTTGTCGGAAGTGATCCACTTTTACCTGGAGGAGGTGATGCCACAGGCTGAG 18935 Query 9935 AACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAAATCTAAAGACCCTA 9994 ||| | | ||||| ||| || || || || || |||| || || || |||||||| Sbjct 18936 AACTATGGGCCTGAGATCAAGGAGCACGTGAACTCGCTGGGGGAGAAGCTGAAGACCCTC 18995 Query 9995 CGGCTCCGCCTG 10006 ||||| || ||| Sbjct 18996 CGGCTGCGACTG 19007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531378401041440