Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq3088488 540 2e-149 seq3088503 439 6e-119 seq3063309 181 3e-41 seq3053335 136 9e-28 >seq3088488 Length=17142 Score = 540 bits (598), Expect = 2e-149 Identities = 755/1043 (72%), Gaps = 28/1043 (3%) Strand=Plus/Minus Query 18994 TTCCCGCTCGACACCCCCGTCCTGCTGACCAACCCGCAGGCCTACATCGGCAAGGCCGGC 19053 ||||| || ||||| || ||||| | |||||| ||| || | |||||||||||||| Sbjct 16505 TTCCCTCTGGACACTCCAGTCCTCATCACCAACGTGCAAACCGCCGTCGGCAAGGCCGGC 16446 Query 19054 GACAAAGGCACGCTCGCCCACACGCTCGACGCCATCACCGACCAGACCAACCCGCTCACG 19113 | ||| ||||| || || || || | | |||| ||||||||||||| || | ||| Sbjct 16445 GTCAAGGGCACCCTGGCTGCCAGCCTGCAAGGCATCGCCGACCAGACCAAGCC--TTACG 16388 Query 19114 GT--CGTGGTGCGCGTCGCCGGCGGTGCTTCCGAGGCCGAGACCACGTCCAACCTGATCG 19171 | |||||| || ||| | || ||| ||| || ||| ||| | |||||| | Sbjct 16387 TTATCGTGGTACGGGTCAAAGAAGGCGCTGACGAAGCGACGACTACGAGCGCCCTGATTG 16328 Query 19172 GCACCACCAACGCGGCCGGCCGGTACACCGGCATGAAGGCGCTGCTGACCGCCCGCAACC 19231 || || | | |||| | |||||||||||||| || ||||| | ||| | Sbjct 16327 GCGGTACAACACCAACCGGTCAATACACCGGCATGAAAGCTCTGCTCGCAGCCAAATCAC 16268 Query 19232 GTTTTGGCGTCGCGCCGCGCATCCTGGCTGTGCCGGGGCTCGACAGCCTGCCAGTCGGGA 19291 | | ||| | | ||||| ||||| | ||||| || |||||||| ||||||| | | Sbjct 16267 GCGTGGGCATGACTCCGCGTATCCTTGGCGTGCCAGGCCTCGACAGTTTGCCAGTAGCCA 16208 Query 19292 CCGAGCTGGTCACCATCGCGCAGAAGCTGCGCGCCTTCGCCTACCTGTCGGCGTACGG-- 19349 ||| || | | ||||||| | | ||||||||||| || ||| || ||| || Sbjct 16207 CCGCCCTCGGCGCCATCGCCAAAGACCTGCGCGCCTTTGCATAC--GTAAGCGCCTGGAA 16150 Query 19350 CTGCCAAACCAAGGAAGAGGCCGTCGCCTACCGCAGCAACTTCGGCCAGCGCGAAGCGAT 19409 |||| ||||||||||||||| || || |||||| |||||||| |||||| ||| Sbjct 16149 CTGCAAAACCAAGGAAGAGGTAGTGGCGTACCGCGAGAACTTCGGTGCCCGCGAAATGAT 16090 Query 19410 GGTGATGTGGCCGGATTTCGTCGGCTGGGATACCGCCGCCAATGCCGAGACCACC----C 19465 |||||| |||||||| ||| | |||||| || | | |||| | ||||| || | Sbjct 16089 GGTGATTTGGCCGGACTTCCTGAACTGGGACACTGTCACCAA---CAAGACCGCCAGCGC 16033 Query 19466 TGTGGGCCACGGCCCGCGCGGTCGGCTTGCGCGCCAAGATCGACAACGACACCGGCTGGC 19525 | | |||| ||||||||| ||||| | ||||||||||||||| | || || || |||| Sbjct 16032 T-TCGGCCGTGGCCCGCGCCCTCGGCCTTCGCGCCAAGATCGACCAAGAGACGGGTTGGC 15974 Query 19526 ACAAGACGCTTTCCAACGTGGCGGTGGGCGGCGTGACCGGTCTGTCGCGC-GACGTGTTC 19584 | || || || ||||||||||| ||| | |||||||||||| | |||| ||||||||| Sbjct 15973 ATAAAACCCTGTCCAACGTGGCCGTGAGTGGCGTGACCGGTATCA-GCGCCGACGTGTTC 15915 Query 19585 TGGGACCTTCAGGACCCGGCGACCGACGCGGGCTACCTGAACGCCAACGAGGTGACCACG 19644 ||||| || || |||| || |||||||| |||||| ||| |||||| || ||||| Sbjct 15914 TGGGATCTGCAAAACCCAGCCACCGACGCCAACTACCTCAACAGCAACGACGTCACCACC 15855 Query 19645 CTGGTTCACCGCGACGGCTACCGCTTCTGGGGCTCGCGCACGTGCAGTGCGGATCCGCTG 19704 ||| | || | |||| | ||||||||||| ||||| ||||||| || ||| || Sbjct 15854 CTGATCAACGCCAACGGTTTTCGCTTCTGGGGTAGCCGCACCTGCAGTGATGACCCGTTG 15795 Query 19705 TTCGCCTTCGAGAACTACACCCGCACCGCGCAGGTGCTGGCCGACACCATGGCGGAAGCA 19764 ||||||||||| ||||||||||||||||||||| | || || |||||||||| ||||| Sbjct 15794 TTCGCCTTCGAAAACTACACCCGCACCGCGCAGATCCTCGCGGACACCATGGGCGAAGCG 15735 Query 19765 CACATGTGGGCGAACGACCTACCGATG-ACGCCCACCCTCGTGCGCGATCTGCTGGAGGG 19823 ||||||||||| |||| || ||| ||| || |||| || ||||| ||| | || || Sbjct 15734 CACATGTGGGCAGTTGACCGCCCTATGCACG-CCTCCCTGGTACGCGACCTGGTCGAAGG 15676 Query 19824 CATCAATGCCAAGTTGCGCATGCTGACCCGCAACGGATACCTGCTGGGCGGC-GCCGCGT 19882 | | | |||||| ||||| | ||| | | || |||||| | |||||| | || | Sbjct 15675 CGTAAGCGCCAAGATGCGCGAGTTGAAATCCCAGGGCTACCTGATCGGCGGCAGTTGC-T 15617 Query 19883 GGTTCGACGCGGACG---CCAACAGCAAGGACACGCTGAAGGCCGGGCAACTCGCCATCG 19939 || || |||||| ||||| ||| ||||| || |||||||| | ||| | | Sbjct 15616 GG---AACCCGGACGACATCAACACCAAAGACACCCTCAAGGCCGGCAAGCTCTGGCTTG 15560 Query 19940 ACTACGACTACACGCCCGTCCCACCTCTGGAGAACCTCACGTTCCGCCAGCGCATCACCG 19999 | ||||||||||| ||||| || || || || ||||||| ||||||||||| ||||||| Sbjct 15559 ATTACGACTACACCCCCGTGCCGCCACTTGAAGACCTCACCTTCCGCCAGCGAATCACCG 15500 Query 20000 ACCGCTACCTGATGCAGTTCGCC 20022 |||| |||||||| | |||||| Sbjct 15499 ACCGTTACCTGATCGACTTCGCC 15477 Score = 87.8 bits (96), Expect = 4e-13 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 20729 ATCACCGTGCGCAAGCCGGGCGCCGGCGAGCTGCGCGGCGTGAGCCTGATGGACCTGATG 20788 ||||| |||||||||| | |||||||| | ||||||||||||||| | || ||| || Sbjct 14731 ATCACACTGCGCAAGCCCAACTCCGGCGAGTTACGCGGCGTGAGCCTGGTAGAGCTGCTG 14672 Query 20789 CGCATGGACGTGACTGCCCTGCACACGGTTCTGCCGCGCATCACCACGCCGACGCTGACC 20848 | ||||| || | |||| || |||||||||||| |||| |||||| | || ||| Sbjct 14671 CAGATGGATGTCGCCAGCCTGATCAAGGTTCTGCCGCGTATCAGCACGCCAAGCCTCACC 14612 Query 20849 ACCGCCGATGT 20859 || ||| || Sbjct 14611 GTCGTCGAAGT 14601 >seq3088503 Length=21467 Score = 439 bits (486), Expect = 6e-119 Identities = 994/1493 (67%), Gaps = 25/1493 (2%) Strand=Plus/Minus Query 4173 CATGAACGACGCGGCGAAGTCCGTCCAGCCGGCGTCGAACTCCAGCCTGCCCTTGCTGAT 4232 ||| | |||| || | ||| ||||| ||||||||||||||||||| ||| || ||| Sbjct 11369 CATCATCGACTGCGCCATGTCGGTCCACCCGGCGTCGAACTCCAGCCGGCCGTTATGGAT 11310 Query 4233 CACGTCGTGCGCCTTGAGCACCAGGGCGGTTTTCACGTCCACGGAATAGGTGAAGCCTTC 4292 |||||| | ||||| ||||||||| ||||| || || |||||| ||||| Sbjct 11309 CACGTCATAGGCCTTCAGCACCAGGCGTGTTTTGACTTCGGGCGAATAGCTGAAGGTGGT 11250 Query 4293 GGCATCCGGACGGAACTTCTGCACCAG--GCGGAACACCGCATCGCCGATGCCGGTCCGG 4350 || |||| ||||| ||||||| ||| || |||| | | | ||||| Sbjct 11249 CACAGCCGGGAAGAACTGGCGCACCAGCTGCGCCACGCCGCTACCCAGC--CCGGTGACA 11192 Query 4351 TCGATGCCCACGTAGGCGACGTCGTAGCGCTCAGCGACGCGCCGGATGGCGCCGGCCTGT 4410 || || || | |||| || |||||| || |||| ||| | ||||| Sbjct 11191 TCAATCCCGATATAGGTCACCCAGTAGCGGTCGCAGACGTTTTTGATAAATGCCGCCTGG 11132 Query 4411 TCCTCGTAGTCGATGCCGCGGAACTGGTGCCGCTCCAGCACGCGGAACTTGCCGCCCGGT 4470 || | |||| ||||| ||||| |||||||||||||| |||||||| |||||||||||| Sbjct 11131 GCCGCAAAGTCCATGCCCCGGAATTGGTGCCGCTCCAGGACGCGGAATTTGCCGCCCGGT 11072 Query 4471 ACCAGTGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGGTCG 4530 ||||| |||| |||||| Sbjct 11071 ACCAGCGGCGGCGCAACCACCACCAGCCCGGAGCAATCACCGGTTTCCGCT---GGGTCG 11015 Query 4531 TAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGTGGCGCGAACGGCCGGAAGTCTTC- 4589 ||||||| ||| ||| | |||| ||||||||||| ||||| ||| | |||| || Sbjct 11014 TAGCCGATCCATACCTGACGGTCACCGAACGGCCGCATGGCGAATGGCTTGTAGTCCTCT 10955 Query 4590 --CCATACCTCCCAACTGTCCACCATCCCGCGCATGAGCATCGCGAGCGGAAACACCGAC 4647 |||| | |||||||||| ||||| | || | |||| ||| | |||||| | Sbjct 10954 GCCCATTCAACCCAACTGTCGACCATGCAGCTCTGCAGCAACGCCAACGGAAAGATGCTG 10895 Query 4648 GCGTTGTCGTCGATGAATACGCACATGAGCAGGTTGGCGAAATCGAGTTCGCTGTACTCC 4707 || ||||| | || | ||||| | |||||||||||| | |||||||||| Sbjct 10894 GCTCCATCGTCAACAAACTCACACATCAACAGGTTGGCGAACGCCTCAGGGCTGTACTCC 10835 Query 4708 AGGCGCAGCTGGTCGAGGTCGAACAGGTTGCAGCCGCCGCGGAGCGCATCCTCCACCGTC 4767 | |||| || || | ||||||||| | ||||||||| | || ||| | || Sbjct 10834 CGACGCAACTCCTCAATGTCGAACAGATCACAGCCGCCGTGCTCTGCGTCCAGGATGGTG 10775 Query 4768 ACGATTTGGCGCCACTGGCCGTCCGCGCAGCGCATGCCGTCGCGAAGCGCGGCGTGGCTC 4827 ||||| || |||||| | |||| ||||| | || | | ||||| ||||| Sbjct 10774 ACGATCTGCCGCCACAACCGGTCCTCGCAGAACCGCCCCTGTTGGAGCGCCCCGTGGGAA 10715 Query 4828 AGGTCGAGCTTGATCTGTTTGTCCTTGGCCTTGCCGCGGTTGAACAGTGCGCCGGACCAG 4887 | ||||| |||| | |||| || | ||| || |||||| | |||||| |||| Sbjct 10714 ACGTCGACCTTGGTGTGTTGCGCCGCTGGCTTACCCTTGTTGAAGCGCTCGCCGGTCCAG 10655 Query 4888 AACGGATAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTAGGTCTGACGCCAGTGC 4947 || | ||||||||||| | || |||||||||||| ||||||||||| | ||||| | | Sbjct 10654 AAGGTGTAGGCCTCATGGGCCATGCTGGACGGCGTCGAGAAGTAGGTTTTGCGCCACTTC 10595 Query 4948 TTGTGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCTGGAAGCGCGGCACCCAGAAG 5007 ||||| || |||||||| || ||||||||| |||||||| || | ||||||| Sbjct 10594 TTGTGCATGGCCATGCCCGAAGCGACCTTGTTCAGTTCCTCAAACTTGAACGTCCAGAAG 10535 Query 5008 TATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGCGGTGCGGGCGTTCGTGCCGAGA 5067 |||| |||||||| | |||||||| || ||| ||||| || || || || ||||| Sbjct 10534 AATTCGTCGAAGTAGAAATTGCCGTGGTAGCCCTGGGCGGTACGCGCATTGGTACCGAGG 10475 Query 5068 AAGTAGAGCGTGGCGCCGTTGGGCAGCACCATCGGATCGCCCTTCAGCTCGATCCCGGCC 5127 || | ||| |||||||||||||| || || ||||| ||| ||||||||| ||| Sbjct 10474 AAAAACAGCTCGGCGCCGTTGGGCAATACGATGGGATCCCCCGTCAGCTCGACACCGATA 10415 Query 5128 GCGTCCTTGGCGAACTGGAT-GATGTATTGCTTGAAGACGTGCGCCTGCGCCTTGCTGGC 5186 | || ||| || || | |||||| || | | || || || || Sbjct 10414 ACCTCACGGGC-AAATGCCTGGATGTACCCGCGAAACAGATAGGCTTGGTTTTTCGATGC 10356 Query 5187 CGATAGGAAAATCTGGTTGCGGCCGGTGGTCAGCGCGTCGATGAACGCCTCGCGTGCGAA 5246 || ||||| ||||| ||||| ||||| |||||| || | ||||||||||| || || Sbjct 10355 GGACAGGAAGATCTGATTGCGCCCGGTTTCCAGCGCATCAAGAAACGCCTCGCGGGCAAA 10296 Query 5247 GTACCACGTCGCGCCGATCTGCCGGCTCTTGAGCAGGTTGCGGATGCGCTCGACCTGCCC 5306 ||| | |||||||||||||||||||| ||||| | | ||| | || | || | || Sbjct 10295 GTAATAGGTCGCGCCGATCTGCCGGCTTTTGAGGATGACGCGAGTCCG-TTGA--TTGCC 10239 Query 5307 AGCCTCGTACCAGACGCGCTGGTAATCG-AACATCGAGTCGCGGAAGGCCTC---CAGGA 5362 |||| ||||||| | |||||| ||| |||| | |||| || || || || | Sbjct 10238 AGCCCGGTACCAGTCTTTCTGGTAGTCGAAACAGC-CGTCGATAAACGCTTCACGCAACA 10180 Query 5363 GCTGCGTCTGTTCCTCGGGACTGATCGCATTGCGCTCGGGCTTGCTGCGCGGCCCCTTGT 5422 ||| |||| || ||| ||||| | || || ||| | ||| |||| || Sbjct 10179 GCTCGATCTGCTCTTCG---CTGATATCGTTTTTTGGGGTCTTTTTCTTCGGACCCTCGT 10123 Query 5423 TGCGGTTCGCCACCTTCGGGTTCAGGTCGGTTTCGTTGCCGCTGGCCTCGTACCGGCGCA 5482 |||| || |||| || ||||| || ||||||||| | |||| | ||| | || | | Sbjct 10122 TGCGTTTAGCCAGGTTAGGGTTGAGCTCGGTTTCGGTACCGCCGCCCTGAAAGCGCTGAA 10063 Query 5483 CGCGCGCCATGCGCTCCATTTGTCGGCCAAGCAGGTCGATTTCCTTGTAGTCCCGGCCTT 5542 | ||| ||| |||| ||| ||| ||||| || ||||||||| |||||| ||| Sbjct 10062 TTCTGGCCTGGCGTTCCAATTGGCGGTGCAGCAGATCAATTTCCTTGAAGTCCCCGCCGC 10003 Query 5543 CCTTCACCTCCTTGGCGACGAGCTGCGCCATGCGCTCTTCGATGCTGTTCGCC-ACGCGC 5601 ||| |||||| || |||||| ||| ||| |||| | || |||| | |||| Sbjct 10002 TCTTGCTTTCCTTGAGGATCAGCTGCACCAACCGCGCTTCCA-GCGCCCCGCCGATGCGC 9944 Query 5602 TCCACTGCATCCGCCGCGTCCCACCCATCGCGCCGCTTCCAGCTGTGCACCGT 5654 || || ||||||| |||||| | || || |||||||||||| | ||| Sbjct 9943 TCGACGTTATCCGCCCGGTCCCAATCGTCTCGGGCCTTCCAGCTGTGTAGCGT 9891 Score = 421 bits (466), Expect = 2e-113 Identities = 1023/1545 (66%), Gaps = 23/1545 (1%) Strand=Plus/Minus Query 6818 ACAATGCGCAACGATACCCGCCGCCTCTTCGCGGCGTACAAGGCTGCAATCGCCAAGCTG 6877 || ||||||||||||||||| | ||||| || ||| || | | |||||||| Sbjct 8753 ACCATGCGCAACGATACCCGTACCGTCTTCAACGCCTACCTGGGCCAACTGGCCAAGCTC 8694 Query 6878 AACGGCGTGGAGCGCGTCGACGAGAAGTTCAGCGTCGCGCCGAGCGTCCAGCAGAAGCTG 6937 || ||||| |||| | || || | ||| || |||||| || | ||| Sbjct 8693 CACAGCGTGCCCGACGTCACCACCAAATTTGCCACCGCCCCCAGCGTCACCCAAACCCTG 8634 Query 6938 GAGACCAAGGTTCAGGAGTCGAGCGACTTCCTGAAAAGCATCAACTTCTACGGCGTGCCC 6997 || | | | | |||||||| || | ||| ||| ||||||| |||||||||| || Sbjct 8633 GAAAACCGGATGCAGGAGTCCAGTCAGTTCTTGAGCGCCATCAACATCTACGGCGTCGCC 8574 Query 6998 GAACAGGAAGGCGAAAAGATCGGCCTGGGCGTGTCCGGCCCGGTGGCAAGCACCACCGAC 7057 || ||| ||||| || || ||| ||||| | ||| ||| || ||||||| || Sbjct 8573 GAGCAGATGGGCGAGAAAATTGGCATGGGCATCGGCGGGCCGAACGCCGGCACCACTGAT 8514 Query 7058 ACCAC--CCAGCAGGACCGGGAGACCTCCGACATTTCGACGATGGACGGTCGCCGTTATC 7115 || | ||| | || || || ||| |||||| || | || | || | || Sbjct 8513 ACAAATACCA--AAGAGCGCGAAACCAGCGACATCAGCACACTCGATGACCGTGGCTACT 8456 Query 7116 GTTGCGAGCAGACCAACTCGGACACGCACATCACCTACCAGAAGCTGGACGCTTGGGCGA 7175 ||| ||||||||||| || || ||| || ||| ||| |||| || ||||| | Sbjct 8455 TCTGCTCGCAGACCAACTTCGATACCCACCTCCGTTACAGCAAGTTGGATGCGTGGGCCA 8396 Query 7176 AGTTCGCCGACTTCCAGACTCGCATCCGCGACGCCATCATCAAGCGCCAGGCGCTGGACC 7235 ||||| ||||||||||| | || || || ||||||||| | || |||||||||||||||| Sbjct 8395 AGTTCCCCGACTTCCAGGCCCGTATTCGTGACGCCATCCTGAAACGCCAGGCGCTGGACC 8336 Query 7236 GCATCATGATCGGCTTCAACGGTGTGAGCCGTGCCGCTACGTCGGACCGGGTGGCCAACC 7295 ||||| ||||||| | ||||| || || || ||||| ||||| ||| | |||| | Sbjct 8335 GCATCCTGATCGGTTGGAACGGCGTCAGTCGCGCCGCGACGTCCAACCCAGCCACCAATC 8276 Query 7296 CGATGCTGCAGGACGTGAACAAGGGCTGGCTGCAGAACCTGCGTGA-GCAGGCGCCGCAG 7354 | | | |||||||| |||| || ||||||||||| |||| | | | |||||| Sbjct 8275 CACTTCGCCAGGACGTCAACATTGGTTGGCTGCAGAAGATGCGCGCCGAAAACGCCGCCC 8216 Query 7355 AGGGTGATGAAGGAAGGCAAGGCGGCCGCCGGCAAGATCACTGTCGGTGGCGCTGGCGCG 7414 | || |||||||||| | | | ||||||| ||||| |||||| || | | Sbjct 8215 -GCGTCATGAAGGAAGTGGTCGAAGGCTCCGGCAAAATCACCATCGGTGCCGGTAAAG-- 8159 Query 7415 GACTATGGAAACCTGGACGCCCTGGTGTACGACATCACGAATCACCTGGTCGAGCCGTGG 7474 ||| ||||| ||||||||||| | | ||| | | | | | | ||||||| Sbjct 8158 -ACTTCACCAACCTCGACGCCCTGGTATTCAGCATGGTGGAAGAGTTCATTGCGCCGTGG 8100 Query 7475 TACGCAGAGGATCCGGATCTGGTCGTTGTGTGCGGTCGCAACCTGCTGTCCGACAAATAC 7534 ||| || || || |||||||| || | ||||||||| | |||||| ||||||| || Sbjct 8099 TACCAGGAAGACCCTGATCTGGTGGTGATCTGCGGTCGCCAACTGCTGGCCGACAAGTAT 8040 Query 7535 TTCCCGCTGGTGAACAGGGACCGCGACCCGGTCCAGCAGATCGCGGCCGACCTCATCATC 7594 |||||| | | |||| ||| || ||| | | | || ||||| || ||| | Sbjct 8039 TTCCCGATCATCAACAAAGACAACGCGCCGACTGAAATGCTGGCCGCCGATATCGTCACC 7980 Query 7595 AGCCAGAAGCGCATCGGCAACCTGCCGGCCATCCGCGTGCCGTACTTCCCGGCGAATGGC 7654 || || |||||| | ||||| |||| ||| | |||||||| ||||||||| || || Sbjct 7979 AGTCAAAAGCGCTTGGGCAATTTGCCAGCCGTGCGCGTGCCTTACTTCCCGCCGCGCGGG 7920 Query 7655 CTGCTGGTGACGCGCCTGGACAACCTGTCCATTTACTACCAGGAGGGCGGGCGCCGTCGC 7714 ||||||| || ||||| |||||||| || |||| ||||| ||| | ||||| ||| Sbjct 7919 TTGCTGGTCACCAAGCTGGAAAACCTGTCGATCTACTGGCAGGAAGGCAGCCGCCGCCGC 7860 Query 7715 ACGATCCTGGACAACGCGAAGCGCGATCGCATCGAAAACTACGAGTCGAGCAACGACGCG 7774 || || | ||||| || ||||| || ||||||||||||||||||||| ||| ||||| Sbjct 7859 ACCGTCGTCGACAATGCCAAGCGTGACCGCATCGAAAACTACGAGTCGGTCAATGACGCA 7800 Query 7775 TACGTGATCGAAGACCTGGCGTGCGCGGCCATGGCCGAAAACATCGCACTGGC----GGC 7830 ||||| || |||||||||| || || | | || |||||||||| |||||| ||| Sbjct 7799 TACGTCATTGAAGACCTGGAATGTGCCTCGCTCGCTGAAAACATCGAACTGGCATAAGGC 7740 Query 7831 GGC--AGCATGACCAGCCCGGCTCGCAACCACTTCCTGCGCGTGACGGCCGCNNNNNNNN 7888 | | | |||||||| || || ||||| | || | || ||||| Sbjct 7739 GACCGACCATGACCAATCCTTGCCGTCGTCACTTTCAACGTATCACTGCCGCCCTGGAGG 7680 Query 7889 NNNNNNNNNNNNNNNNTTC-CAACCCGCTGCGCTACGCCACCGGCCAAGAGCTGATGCTG 7947 | ||| || || | |||||| | | |||| ||| Sbjct 7679 CGGCGGCCGTTGAACCGACTCAAACC-ATGGCCGGCGCCACGGCTTACGAGCACCAGCTC 7621 Query 7948 GCACAGCTGGCCGAGCACAAGCGTCAG---CTCAAGCAGGTGCAGTCCGTCGAGCGCAAG 8004 || ||| | | || | || | | || || ||||||||||| | || |||| Sbjct 7620 AACCAACTG--CTA-CAGGATCGCCTGCGCCTGAAACAGGTGCAGTCAAACCAGGGCAAA 7564 Query 8005 GCGGAGCTGAAGCGCAAGCTGCTGCCCGAGTACGCGGCCTGGGTCCGTGGCGTGCTGGAG 8064 || || || |||||| | |||||||||| ||| | | |||| || ||||||||| Sbjct 7563 GCCGAACTCAAGCGCCAATTGCTGCCCGACTACATCCCTTATGTCCAGGGAGTGCTGGAG 7504 Query 8065 GCCGACACCGGTGCGCAGGACGAGGTCTTCATGACGGTCATGGTGTGGCTGATCGATGTC 8124 |||| || || || |||||||| | | ||||| ||||| |||| |||||| Sbjct 7503 GCCGGTCAGGGCGCACAAGACGAGGTAATGACCACGGTAATGGTTTGGCGCTTCGATGCT 7444 Query 8125 GGCAACTTCGCCGACGCCCTGGAGCTGGCCACTTACGCCATCCGGCACAAGTTGGAGATG 8184 ||| |||| | | || ||| || | ||||| |||| | |||||| ||| ||| Sbjct 7443 GGCGACTTTACGGGCGGCCTCGATATCGCCACCTACGTGCTGAAACACAAGATGGTCATG 7384 Query 8185 CCCGATCAGTACCAGCGCACCACGGCCTGCCTGATCGCCGAAGAGTTCGCCAACATGGCC 8244 || || | | | ||||| || |||||| | |||||||| |||||| || Sbjct 7383 CCTGACCGATTCGCTCGCACGCTGGGGTGCCTGGTAGCCGAAGAAGTCGCCACGGCAGCG 7324 Query 8245 CTGAAGGGCATCGAGGCCGGCGATCCGGTGGACGTGACCACGCTGCACGAGGTGGCCGAG 8304 | |||| || | ||| ||| | ||| || | | |||||| ||| || Sbjct 7323 TTTAAGGCTCAGAAGATCAACGAGCCGTTCGACTTGGCAATCCTGCACCGCACGGCTGAA 7264 Query 8305 CTGGTCGCGGCCGAGGACATGCCGGACGAGGTGCGCGCCAAGCTG 8349 ||| || |||| |||||||| ||| ||| |||||||||||| Sbjct 7263 CTGACCGAATCCGAAGACATGCCCGACCAGGCACGCGCCAAGCTG 7219 Score = 196 bits (216), Expect = 1e-45 Identities = 255/348 (73%), Gaps = 10/348 (3%) Strand=Plus/Minus Query 3074 CCGAATCCGCCGGTGTTGTTCGGAATGATGCCCATGAGCTGCGGCGG--TACGCGGTGCG 3131 || || || || | ||| | ||| | |||||||| |||||||| || ||||| || Sbjct 12423 CCAAAGCCCCCCGCGTTCTGCGGCACAATGCCCATCAGCTGCGGTGGAATACGCAA-GCT 12365 Query 3132 CGGCGAGCTGGTCGTCGCGCGTGACGTTCTTGAT---GTTCCAGAACTCGTCCTTCGCGG 3188 ||| ||| ||||| || || ||| ||||| ||| ||| || ||||| || | Sbjct 12364 -GGCTAGCACATCGTCACGGGTTTGGTTTTTGATCGAGTT---GAATTCATCCTTGGCCG 12309 Query 3189 CCACCTCGGACACCGGTAGCAACTGGATCCCATCCTTCTTGCCATTGGGCGCGTACATGA 3248 ||||||| ||||| | || ||| ||||| ||||||||||| |||||| |||| | Sbjct 12308 CCACCTCACTGACCGGGATCAGCTGTATCCCGTCCTTCTTGCCGGTGGGCGAATACACAA 12249 Query 3249 ACAGGTTGCGGAAATTGCCCGGCCCCTTGGCACTCTTCATCGCCTCGCGCAGCGTGTCGA 3308 ||| |||||| |||||||| |||||||||| ||| | |||| ||||| | ||||| Sbjct 12248 ACAAGTTGCGAAAATTGCCTGGCCCCTTGGAGTCCTTGAGAGCCTTGCGCAAAGCGTCGA 12189 Query 3309 CGTCCTCCTGCTTCTGCGCCGCATCGGTCATGTACAGGATGAAGCCGGCGTGCGAGCCGT 3368 || | |||| || |||||||||||||| || |||||||||||||| ||| | Sbjct 12188 TATCGGTTTCAGTCTGTGCGGCATCGGTCATGTAGAGAATGAAGCCGGCGTGACTGCCAT 12129 Query 3369 TCTTGTAGTACCGGCGCCGGAACAGCGTGGCCGATTCGTTCAACCACG 3416 ||| ||||||| ||| ||||||| ||||||||||||||| | | ||| Sbjct 12128 TCTCGTAGTACTTGCGGCGGAACAACGTGGCCGATTCGTTGAGCAACG 12081 Score = 134 bits (148), Expect = 3e-27 Identities = 157/211 (74%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 9067 CGCCGCGATGCGCGCTGGGCAGTCAGCGACATCACCGGCGCTGCGCGCACCACCGTGGAG 9126 ||||| ||| ||| ||||| || ||||| | |||| | ||||||||||||||| Sbjct 6536 CGCCGGGATCTGCGTTGGGCGGTTCGCGACTTTCTCGGCATCGGCCGCACCACCGTGGAG 6477 Query 9127 CTGATCTGATG-----CGC-GTGCGGGCGATCCAGGGCGACACCATCGACGCCATCTGCC 9180 |||||||||| ||| || || || | ||| ||||||| ||||||| | ||| Sbjct 6476 TTGATCTGATGGCCGTCGCCGTTCGCGCCAACCAAAACGACACCGTCGACGCGCTTTGCT 6417 Query 9181 GGCGGGTCTACGGCCGCACGGCGAGCGTGACGGAAGCCGTGCTGGCCGCCAACCCCGGCA 9240 ||||| |||||||||||| || |||| || || |||||||| | |||||||||||| Sbjct 6416 GGCGGCACTACGGCCGCACTGCCGGCGTTACCGAGGCCGTGCTTGAAGCCAACCCCGGCC 6357 Query 9241 TCGCCGACTTGGGTCCCATCCTGCCGCACGG 9271 | |||||| || || ||||||||||| || Sbjct 6356 TGGCCGACCACGGCCCGATCCTGCCGCAAGG 6326 Score = 127 bits (140), Expect = 5e-25 Identities = 300/445 (67%), Gaps = 10/445 (2%) Strand=Plus/Minus Query 15289 AACGCGACGCCGCTGGAGCGTCGCGCCGCGCAGACG--GGCGCACGCATCGAACGCGTGC 15346 ||| ||||| ||||||| | | || || || || |||||| || | ||||||| Sbjct 1169 AACTCGACGACGCTGGAACAACAAGCTGCTCAAGCGCTGGCGCAA--ATTCAGCGCGTGC 1112 Query 15347 CGGTGCCGCTGCGCGACCTGTGGAACCCAGCCACCTGTCCGGCCGAGCTGTTGCCCTTCC 15406 | | || |||||| | || || || || | | | || ||| |||||| |||| | || Sbjct 1111 CCATTCCACTGCGCCAGCTTTGCAATCCCGACGCTTGCCCGCTGGAGCTGCTGCCATACC 1052 Query 15407 TGGCCTGGTCGTTTTCCGTGGACCGCTGGAACCCGGCCTGGCCGCTCGCCACCAAGCGCG 15466 |||||||| | || || || || |||||| || ||||| ||| | || || | Sbjct 1051 TGGCCTGGGCCTTCTCGGTTGATCGCTGGGACAGCAAATGGCCTGAAGCCGCGAAACG-G 993 Query 15467 CCGTGACGGCCG--CCTCCTACTTCGTGCAC-CGCAAGAAGGGCACGATCGGCGCGCTTC 15523 || | | || | ||| ||||| | ||| ||| |||||||| ||||| || || | Sbjct 992 TCG-GCCATTCGATCATCCCACTTCATCCACTCGCGT-AAGGGCACCATCGGAGCCCTAC 935 Query 15524 GCCGCGCGGTGGAGCCGCTGGGCTTCCTGATTCGCGTCATCGAGTGGTGGCAGACCAACC 15583 | |||| ||| || ||| |||| | |||||| || | ||||||||||| |||| | Sbjct 934 GACGCGTGGTCGAACCGTTGGGGTATCTGATTGAAGTGCTTGAGTGGTGGCAAACCACGC 875 Query 15584 CGCCCGGGCCGCGCGGGTCGTTCGGGCTCGATGTGGGCGTGCTGCAAACCGGCATCGACG 15643 || ||| || || | |||| || | ||||| ||||| |||||||||| || Sbjct 874 CGAACGGTGTGCCAGGTACATTCGCAATCAAGGTGGGTGTGCTCGAAACCGGCATAACCG 815 Query 15644 AGGCCATGTACGCCGAGCTGGAACGCCTCATTGACGACGCCAAGCCGTGTTCCCGGCCGA 15703 ||| |||||| |||||| | ||||| |||||||||| ||| |||| | Sbjct 814 AGGAAATGTACCAGGAGCTGACCTGGCTCATCGACGACGCCAGGCCAGTCACCCGACACC 755 Query 15704 TGCTCGGCCTGCAAATCAGCCTGGA 15728 || ||||||| |||||||| || Sbjct 754 TGACCGGCCTGGCTATCAGCCTTGA 730 Score = 114 bits (126), Expect = 3e-21 Identities = 164/232 (71%), Gaps = 12/232 (5%) Strand=Plus/Minus Query 6085 GCCCGTTCAAAGCCTACGGCGACGTGACAGCACTGAAGACCGAAGAGCAGGA------CG 6138 |||| ||||||||||||||||||||| || | ||||||||||| ||| || Sbjct 9458 GCCCATTCAAAGCCTACGGCGACGTGCTGGCGGTCAAGACCGAAGAAGTGGAAATCAACG 9399 Query 6139 GCAAGA------TGCGCCTGCTCGCGCAGATCGATCCCACGGACGACCTGGTCGCCATGA 6192 || ||| || ||| |||| || |||| || ||| ||| ||| ||||||||| Sbjct 9398 GCCAGAAAAAGTTGGCTCTGTTCGCCCAAGTCGAACCGACGCCCGAACTGATCGCCATGA 9339 Query 6193 CCAAGGCTCGCCAGAAAATCTTTGCCTCTATGGAGTTGAACCCGAGCTTCGCCGACACCG 6252 |||||| | ||||| ||| |||| || || | || |||||||||||||| | Sbjct 9338 ACAAGGCCAGGCAGAAGGTCTACACCTCCATCGAAATCGACGACAGCTTCGCCGACACAG 9279 Query 6253 GCGAGGCCTACCTGGTCGGCCTCGCCGTGACCGACAACCCGGCAAGCCTGGG 6304 | || |||||| | ||||| || || || |||||| ||| || ||| |||| Sbjct 9278 GGGAAGCCTACATCGTCGGTCTGGCAGTCACCGACTCCCCTGCCAGCTTGGG 9227 Score = 80.6 bits (88), Expect = 6e-11 Identities = 109/150 (73%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 14506 TGGAATCCGAGCCGATCACCAAGCTCTTGCAGGAGAACGCCTACCGCGAGCTGGTGTGGC 14565 ||||||| |||||| | | |||||| |||||||||| || ||||||||| || |||| Sbjct 1953 TGGAATCGGAGCCGCTGAACAAGCTGCTGCAGGAGAATGCATACCGCGAGACTGTTTGGC 1894 Query 14566 GCCAGCGCGTGAACGACGCGGCGCGTGGGGTCA--TGCTGGCCTTCGCCGAAGGGGAAGA 14623 | |||||||| || || || | | | || | | |||| ||| ||| || || Sbjct 1893 GTCAGCGCGTCAATGAAGC--CTCCTTGGCTAACTTGCTTGCCACAGCCCGTGGCACCGA 1836 Query 14624 CCTGGAGCAGATTGCGGCGAACTTCAACGT 14653 | |||| ||| |||| ||||||||||| || Sbjct 1835 CTTGGAACAGCTTGCCGCGAACTTCAATGT 1806 >seq3063309 Length=1409 Score = 181 bits (200), Expect = 3e-41 Identities = 411/607 (68%), Gaps = 22/607 (4%) Strand=Plus/Minus Query 4695 TTCGCTGTACTCCAGGCGCAGCTGGTCGAGGTCGAACAGGTTGCAGCCGCCGCGGAGCGC 4754 |||| ||||||||| |||| || |||||||||||||| | |||||||||| | || Sbjct 596 TTCGTCGTACTCCAGCTGCAGTTGCTCGAGGTCGAACAGATCGCAGCCGCCGGCTATGGC 537 Query 4755 ATCCTCCACCGTCACGATTTGGCGCCACTGGCCGTCCGCGCA----GCGCATGCCGTCGC 4810 || |||| || | | ||| |||||| |||||||| | ||| |||| || | Sbjct 536 GTCGTCCAGGGTGATGGTTTTGCGCCATTGGCCGTCGGGGCACAATGCGC---CCTGGGT 480 Query 4811 GAAGCGCGGC---GTGGCTCAGGTCGAGCTTGATCTGTTTGTCCTTGGCCTTGCCGCGGT 4867 | | || | |||| ||||| || | || ||| | | ||||| | | Sbjct 479 GTATGACGCCTCGGTGGGCCAGGTGCCGCCGGC-CTTCTTGCC---GCGCTTGCTGTTGC 424 Query 4868 TGAACAGTGCGCCGGACCAGAACGGATAGGCCTCATGCGACAAGCTGGAC--GGCGTGGA 4925 ||| |||| ||||||||||| || || | ||||| | ||| | ||||| || Sbjct 423 GGAATTCCTCGCCCGACCAGAACGGGTACGCTTGGTGCGAGA--CTGCGCTGGGCGTCGA 366 Query 4926 GAAGTAGGTCTGACGCCAGTGCTTGTGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTC 4985 |||||||| | ||||| | ||||||| | ||||| | ||| || ||| |||| Sbjct 365 AAAGTAGGTTTTGCGCCACTTCTTGTGGGTGCCCATGGCACTGGCCACGGTGCTGAGTTT 306 Query 4986 CTGGAAGCGCGGCACCCAGAAGTATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGC 5045 | |||| | | ||| || || ||||||| ||| | || ||| || || ||| || Sbjct 305 GTCGAAGTCACGTATCCAAAAATACTCATCGACGTAGACGTGGCCATGGTAGCCCTGGGC 246 Query 5046 GGTGCGGGCGTTCGT-GCCGAGAAAGTAGAGCGTGGCGCCGTTGGGCAGCACCATCGGAT 5104 ||||| | || || | | ||||| ||| |||||||||| ||| ||||| | Sbjct 245 GGTGCTGCTATTGGTCGACAAGAAACGC-AGCTCGGCGCCGTTGCTGAGCGTGATCGGGT 187 Query 5105 CGCCCTTCAGCTCGATCCCGGCCGCGTCCTTGGCGAACTGGATGATGT-ATTGCTTGAAG 5163 ||| |||||||||| || | | ||| || ||||||||||||| | ||| ||| Sbjct 186 TGCCGGTCAGCTCGATGTCGAACCACTGCTTTGCAAACTGGATGATGTAACTGC-GGAAA 128 Query 5164 ACGTGCGCCTGCGCCTTGCTGGCCGATAGGAAAATCTGGTTGCGGCCGGTGGTCAGCGCG 5223 | | || ||||| ||||||||| ||||| | ||||||| |||||| || ||| Sbjct 127 ATTTCCGACTGCGAGCGGCTGGCCGACAGGAACACCTGGTTGTCGCCGGTCAGCACGGCG 68 Query 5224 TCGATGAACGCCTCGCGTGCGAAGTACCACGTCGCGCCGATCTGCCGGCTCTTGAGCAGG 5283 || |||||||| |||| |||||||| ||||| ||| | ||| ||||| || || | | Sbjct 67 TCCATGAACGCTTCGCCGGCGAAGTAGTACGTCAGGCCCACCTGGCGGCTTTTCAGGATG 8 Query 5284 TTGCGGA 5290 ||||||| Sbjct 7 TTGCGGA 1 >seq3053335 Length=1201 Score = 136 bits (150), Expect = 9e-28 Identities = 215/300 (72%), Gaps = 16/300 (5%) Strand=Plus/Plus Query 7157 AAGCTGGACGCTTGGGCGAAGTTCGCCGACTTCCAGACTCGC-ATCCGCGACGCCATCAT 7215 ||| | || || ||||||||||| |||||||| | |||| || | || |||| | Sbjct 206 AAGATCGATGCCTGGGCGAAGTTTCCCGACTTCAAAGATCGCTATTC-CGCCGCCGTGCA 264 Query 7216 CAAGCGCCAGGCGCTGGACCGCATCATGATCGGCTTCAACGGTGTGAGCCGTGCCGCTAC 7275 |||||| |||| |||||| ||| | ||||| ||| |||| | | ||| || || Sbjct 265 AAAGCGCATCGCGCAGGACCGAATCGTTATCGGTTTCCACGGC---ACTCATGCGGCCAC 321 Query 7276 GTCGGACCGGGT-GGCCAAC---CCGATGCTGCAGGACGTGAACAAGGGCTGGCTGCAGA 7331 | | ||||| | || || || | ||||||||||||||||||||||||||||||| Sbjct 322 G-CAGACCGACTTGGAGAAATTTCCCAAGCTGCAGGACGTGAACAAGGGCTGGCTGCAGC 380 Query 7332 ACCTGCGTGAGCAGGCGCCGCAGAGGGTGATGAAGGAAGGCAAGGCGGCCGCCGGCAAGA 7391 | |||| || ||||| |||||| |||| |||| || ||| || ||| |||||| Sbjct 381 AATTGCGCGAACAGGCCCCGCAGCAGGTGCTGAAAGAGGGC---GCCAACGCTGGCAAGG 437 Query 7392 TCACTGTCGGTGGCGCTGGCGCGGACTATGGAAACCTGGACGCCCTGGTGTACGACATCA 7451 |||| || ||||| |||| || || | ||||| || ||||||||| |||||| || Sbjct 438 TCACGCTC---GGCGCCGGCGGCGATTACGCCAACCTTGATGCCCTGGTGCACGACACCA 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119365853728204