Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_009447.1 Length=52414 Score E Sequences producing significant alignments: (Bits) Value seq3086525 86.0 2e-12 >seq3086525 Length=4044 Score = 86.0 bits (94), Expect = 2e-12 Identities = 165/238 (69%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 30795 GTCTCGGCCTTGTCGATGTACATCAGCGGGGTTTTGATGGTGATCGACGTATCGTA-GCC 30853 ||||||||||||| | ||||||||||||| | || || | || ||||| | ||| Sbjct 756 GTCTCGGCCTTGTTCAGCCACATCAGCGGGGTATCGA-GGCGTACGTCGTATTCCATGCC 698 Query 30854 GATGTTCAGCGTCGCGGCCAGCGCGTTGATGAACGAATCGCGGCAATCCGGGTAGCCCGA 30913 | || || | | | |||||| |||| |||| ||||||||||||||||| ||||| Sbjct 697 CAGCTTGAGGGCCTGGTTCAGCGCCTTGACGAACTCGTCGCGGCAATCCGGGTAACCCGA 638 Query 30914 ATAGTCGGTCATGCAGACGCCAGTCCACA-GTTCATCCGCGCCCACTTGCTGAGCGTAGG 30972 | ||||| ||| |||||||| || | || || || |||||| | |||||| Sbjct 637 GAAATCGGTTTCGCACACGCCAGTGATCACGCTC-TCGGCCTTCACTTGATAGGCGTAGA 579 Query 30973 CATGGGCGAGCGTCAGGAACGCCGCGTTGCGATTCGGCACGAAGCTGGCGGGCAGGCT 31030 ||| || ||||||||| ||| || ||||||||| || |||||||| Sbjct 578 TCGCGGCCAGGGTCAGGAACAGGATGTTACGCCCCGGCACGAAAGTGCTCGGCAGGCT 521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161456173618832