Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_009514.1 Length=47021 Score E Sequences producing significant alignments: (Bits) Value seq3048559 165 2e-36 seq2563683 163 8e-36 seq2559636 154 4e-33 seq277625 109 2e-19 seq333413 80.6 8e-11 >seq3048559 Length=1123 Score = 165 bits (182), Expect = 2e-36 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 37473 GAGGTGCAGCATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAATCC 37532 ||||||| || |||| |||| || ||||| |||||||| |||| || || ||||| Sbjct 333 GAGGTGCCGCGTGAGCATGGGCCTTATGGTCGCCGCGATGAAGCTTCGTGTCGGCAATCC 392 Query 37533 ATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTG 37592 |||||| || || || ||||||||||||||||| || |||||||| ||||||||||| Sbjct 393 ATTGCGCAAGCTTGTCCTGATCAAGCTGGCTGACAACGCCAGCGACATAGGTGAGTGCTG 452 Query 37593 GCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGTGATGAATCA 37652 ||| ||| |||||| | |||||||||||||| || ||||| || || || ||||| || Sbjct 453 GCCGTCCTATCAGCATGTCGCTGACCAGTGCGAAATCAGCAAGCGATCAGTAATGAACCA 512 Query 37653 TATTGCGGCCCTTTGTGAGTCCGG 37676 || | ||||| ||||| |||| Sbjct 513 CATCACCGCCCTGTGTGAAGCCGG 536 >seq2563683 Length=175 Score = 163 bits (180), Expect = 8e-36 Identities = 140/173 (81%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 37471 CGGAGGTGCAGCATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAAT 37530 ||||||||||||||||| |||| || ||||| ||||||||| |||| || |||||| Sbjct 174 CGGAGGTGCAGCATGAGCATGGGCCTTATGGTCGCCGCGATGAAACTTCGCGTCGGTAAT 115 Query 37531 CCATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGC 37590 ||| |||| || ||||| ||||||||| |||| || || |||||||| ||||||||| Sbjct 114 CCACTGCGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTTGGTGAGTGC 55 Query 37591 TGGCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGT 37643 ||||| ||||||||| || || || ||||||||||| ||||| || ||||| Sbjct 54 TGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAAGCGCTCTGT 2 >seq2559636 Length=175 Score = 154 bits (170), Expect = 4e-33 Identities = 138/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 37471 CGGAGGTGCAGCATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAAT 37530 ||||||||||||||||| |||| || ||||| ||||||||| |||| || |||||| Sbjct 174 CGGAGGTGCAGCATGAGCATGGGCCTTATGGTCGCCGCGATGAAACTTCGCGTCGGTAAT 115 Query 37531 CCATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGC 37590 || | || || ||||| ||||||||| |||| || || |||||||| ||||||||| Sbjct 114 CCTCTACGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTCGGTGAGTGC 55 Query 37591 TGGCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGT 37643 ||||| ||||||||| || || || ||||||||||| ||||| || ||||| Sbjct 54 TGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAAGCGCTCTGT 2 >seq277625 Length=52836 Score = 109 bits (120), Expect = 2e-19 Identities = 114/148 (77%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 37483 ATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGA--GTGGGTAATCCATTGCGAA 37540 ||||| ||||| |||||||| || || ||||||| ||| || ||||| || | || | Sbjct 40875 ATGAGCATGGATCTGATGGTCAAGGCCATGAAAA--CGAAGGTCGGTAACCCGCTCCGTA 40818 Query 37541 AACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTGGCCCAGCT 37600 | |||| ||| ||||| |||| || || ||||| |||||||| ||||||||||| | Sbjct 40817 AGTTGGTGCTGGTCAAGTTGGCCGACAACGCCAGTGATCAGGGCGAGTGCTGGCCGTCGT 40758 Query 37601 ACCAGCATATTGCTGACCAGTGCGAGAT 37628 ||||||| ||||| || || || ||||| Sbjct 40757 ACCAGCACATTGCCGATCAATGTGAGAT 40730 >seq333413 Length=629 Score = 80.6 bits (88), Expect = 8e-11 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 16044 CTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGGCTTTGGCGGCACGGAG 16103 ||||| |||||||||||||||||||||| | ||| |||| ||| |||||||| || Sbjct 1 CTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCGGATGGCAAGGGCGGCACCGAA 60 Query 16104 CCGCGCATCACCTGTAATGCGTACCTG 16130 |||||| ||||||| || ||||||| Sbjct 61 CCGCGCTTCACCTGCAACCTGTACCTG 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144831514532106