Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_009542.2
Length=33985
Score E
Sequences producing significant alignments: (Bits) Value
seq3063309 203 7e-48
seq3083967 122 2e-23
seq3088503 116 8e-22
seq3082680 116 8e-22
>seq3063309
Length=1409
Score = 203 bits (224), Expect = 7e-48
Identities = 812/1257 (65%), Gaps = 31/1257 (2%)
Strand=Plus/Minus
Query 13068 GTGGGTATCGAGGGGCTCATTGGCCACGGCGTGGGCGATGGCAAAAAACACGTCGGCGTG 13127
|| ||| | |||||| |||||| || |||||| ||| | | | |||||||||
Sbjct 1241 GTTGGTGTTGAGGGGTTCATTGAACAGGGCGTGCATGATCGACCAGGCGATGTCGGCGTG 1182
Query 13128 ACCGGTCACGTTGTCACGCGCAGCCCGGAACGTCATCTGGCCGCCGCCGGTGGTGCTGCG 13187
||||| ||| |||| ||| | | | || | |||||||| | |||||||| |||
Sbjct 1181 GCCGGTGGCGTCAGTGCGCGAAGCGCTGTAGGTGACCTGGCCGCTGGTGGTGGTGCCGCG 1122
Query 13188 CTTGATGGCGAGGAAGGCGAGAGGGATGTCC--CGATCCGAGCTGTCCCACTCGATGCGG 13245
|||||||| ||||| || | | |||||| | | ||| || |||||| |||||||||
Sbjct 1121 CTTGATGGTCAGGAACGCCTGTGCGATGTCGGTCCAACCG-GC-GTCCCATTCGATGCGG 1064
Query 13246 TTTGCCTCCACCACATCGATCATCTTGAGGACCAGCCGTGACTT-GCTCTCGATGCTGTA 13304
| ||| | | || ||||| ||||| ||| || | |||||| ||||||
Sbjct 1063 CTCCCCTGGATCGTGTCCTGGGCTTTGAGTACCAGT-GTGTTTTTGGTCTCGAGGCTGTA 1005
Query 13305 GTTGATGGGGTGGCACACCCCTTT-GAACACCGGCTTCAAGAGGTCATATACCCCGGCGC 13363
| ||| | || | ||| | | ||| | || || ||||| | || ||| ||
Sbjct 1004 ATGGATCGC-TGTCGCACGCGGGTAGAAGTCGCGCACCA---GGTCAAACACACCGTAGC 949
Query 13364 CGATGCCGGAGACATCGACACCCAGATAGGTG-ACCCGGAACTTCTTGGCGATGCGCTCT 13422
|||| |||| ||||| || | | | || || ||| || || | ||
Sbjct 948 CGATACCGGTTGTATCGATGCCGATGT-GCTGCACGTTGAAACGCTCGGTAAGTTTCTTG 890
Query 13423 ATCTCCTGCGCCTGATACTGGAAGTTCAACCCGCGCCAGTAGTGCTTTTCCAGCACTCGG 13482
| || | ||||| |||| ||| | ||| ||||| ||| |||||||| | |||
Sbjct 889 ACCTGGTCGGCCTGGTACTTGAACGACTGCCCACGCCAACTGTGTTTTTCCAGGATGCGG 830
Query 13483 AAGCGCTCGCCGGCAACCGTGGGCGGGGCGACCACCACCAGGGTGGCATTGTCGCGGGTG 13542
|| | | |||| || ||||| ||||||||||| ||||| | ||||||||||
Sbjct 829 AATTTCGCTCCGGGTTCCAGTGGCGGAGCGACCACCACGCACGTGGCGTCGTCGCGGGTG 770
Query 13543 CGGCTCGGGTCATAACCCATCCACACCTCGCGCCGCCCGAACGGGTCAGGACGCCCGGGC 13602
|||||||| || || || | ||||||| || ||||| || | | | ||
Sbjct 769 CGGCTCGGATCGTAGCCAAGCCACACCGGGCTGTTGCCGAAAGGTCGATCCAGTTCAGGG 710
Query 13603 TTGTAGTCCTCCCATCGGGTGGGGTCCACCCCTGCCCGCTCCATGTCCTGGAACTTGAAC 13662
|||||||||||||| | |||| |||||||| ||| | || |||
Sbjct 709 TTGTAGTCCTCCCACAACGACAGGTCGGAGTAACACCGCTCCAGGTCTTTGAGGCCGAAG 650
Query 13663 ACAGACAGGGCATCGTCGATAAAGCGGCACATGTAGAGGCGGTCGAACACCTCCTCCGGG 13722
| | || |||||| || ||| | | || | | ||| || || |
Sbjct 649 GCGCTCTGGCTGCTGTCGATGAACTTGCAGTAGAACAGCTGCTGGAATTTGTCTTCGTCG 590
Query 13723 TACTCGTCCTTGAGCTCCTCGATGTCGATGAGGTGGCAACCGAGGCGAATGGCGTCCTCG 13782
||||| || || | ||||| ||||| || | ||| ||| | |||||||| ||
Sbjct 589 TACTCCAGCTGCAGTTGCTCGAGGTCGAACAGATCGCAGCCGCCGGCTATGGCGTCGTCC 530
Query 13783 ATGGTGATGACGTAGCGCCACTGCCTGTCAGGGCAGA-TGCGGCCGCCGTCGCGTAGGTC 13841
| ||||||| | |||||| || | ||| ||||| | |||| || || ||| | |
Sbjct 529 AGGGTGATGGTTTTGCGCCATTGGCCGTCGGGGCACAATGCGCCCTGGGT---GTATGAC 473
Query 13842 ATCTTCA----CCAGGGAAGTCGATGGCCACCCGGCTCGGCCGCTGTCCCTTCCAGCGAT 13897
|| ||||| | || |||| | || || |||| | || | | |
Sbjct 472 GCCTCGGTGGGCCAGGT--GCCGCCGGCCTTCTTGC-CG--CGCTTGCTGTTGCGGAATT 418
Query 13898 CCCCG---GTCCAGAACCGGTACGCCTCGTGC-ACCTTGCTCGACGGGGTCGAGAAGTAG 13953
|| || | ||||||| ||||||| | |||| | ||| | || ||||| ||||||
Sbjct 417 CCTCGCCCGACCAGAACGGGTACGCTTGGTGCGAGACTGCGCTG-GGCGTCGAAAAGTAG 359
Query 13954 GTCTTGCGCCAGTGGCTCTGGGTCGCCATGGCACTGGCCACATCAGACAGCTTCTCGAAG 14013
|| |||||||| | | ||||| |||||||||||||||| || || ||||||
Sbjct 358 GTTTTGCGCCACTTCTTGTGGGTGCCCATGGCACTGGCCACGGTGCTGAGTTTGTCGAAG 299
Query 14014 TTGGGGATCCAGAAGTATTCGTCGATGTAGACGTTGCCGGAGCGGGACTGGGCACTGTTG 14073
| | ||||| || || || |||| |||||||| ||| | | |||||| || ||
Sbjct 298 TCACGTATCCAAAAATACTCATCGACGTAGACGTGGCCATGGTAGCCCTGGGCGGTGCTG 239
Query 14074 GAGTTGGTGGAGCAGAAGTGCAGCTCGGCCCCGTTCGACAGCACGATGGGGTTGCCGGTC 14133
||||| || |||| |||||||||| ||||| ||| ||| ||||||||||||
Sbjct 238 CTATTGGTCGACAAGAAACGCAGCTCGGCGCCGTTGCTGAGCGTGATCGGGTTGCCGGTC 179
Query 14134 AGGGTGACGCCGAGGAAGGTCTGGGCGATCTTGCAGATATAGGAGCGGAACACCTCCGCC 14193
|| || | ||| | || || | || | ||| || |||||| | |||| |
Sbjct 178 AGCTCGATGTCGAACCACTGCTTTGCAAACTGGATGATGTAACTGCGGAAAATTTCCGAC 119
Query 14194 TGGGCGCGGGTGGCGGACAGGAAAATCTGGTTGCCACCCGTCAGAATGGCATCCTCCAAC 14253
|| | |||| |||| |||||||| | ||||||| | || ||||| | ||| ||| |||
Sbjct 118 TGCGAGCGGCTGGCCGACAGGAACACCTGGTTGTCGCCGGTCAGCACGGCGTCCATGAAC 59
Query 14254 GCCTCGCCGGCGAAATAGTAAGTCATCCCGATCTGACGGGACTTGAGAATGTTACGG 14310
|| ||||||||||| ||||| |||| || | ||| ||| || || ||||| |||
Sbjct 58 GCTTCGCCGGCGAAGTAGTACGTCAGGCCCACCTGGCGGCTTTTCAGGATGTTGCGG 2
>seq3083967
Length=2829
Score = 122 bits (134), Expect = 2e-23
Identities = 201/285 (71%), Gaps = 10/285 (4%)
Strand=Plus/Minus
Query 11484 TCGTCCTTGGTTGCGATGTCCCCCACCGGGATGAGCTTGATGCCATCGGGCTTGCCATCG 11543
|||||||||| || ||||||||| || |||| || || | | |||||| |
Sbjct 720 TCGTCCTTGGCCTGGAAGTCCCCCACGGGAATGATCTGAATTGCGTTTTCCTTGCCGTTA 661
Query 11544 GGGATGTTCACGAACATCGAGCGGAAGTTCCCTAC-CCCTTTGGAGTTCGC-GATCATCT 11601
|||||||| ||||||||||| || ||||| || || ||||| || ||| ||||
Sbjct 660 GGGATGTTGACGAACATCGAACGAAAGTTGCCCACGCCCTTACTAG--CGCTGATCTGGG 603
Query 11602 CCTTCATCTCCTCTTCGGTGTCGTCGTCCATGTTGGGGTCGGTCGCGTAGAAGATGAACC 11661
| || | |||||| || ||| || || || ||| | | ||| |||||| | |
Sbjct 602 CGCGCAGGTTTTCTTCGTCTTCCTCGGTCAAGTCCGGATCGTTGGTGTAAAAGATGTATC 543
Query 11662 CCATGTGGGCGCCGTTGAGGAAGTAGCGGCGTCGGAACAGGGTGGCGTCCTGGTTGAG-- 11719
|| ||| ||||||||| | | ||||| || ||||| ||||| ||| | | ||||||
Sbjct 542 CCGCGTGTGCGCCGTTGCTGTAATAGCGCCGGCGGAAAAGGGTCGCGGCTTCGTTGAGTA 483
Query 11720 -CAGCGCAGACTGCAGGCCGCCAAGGTAATCGGGCATGCCATAGA 11763
|||||| |||||| ||||| ||||| ||||||| ||| ||||
Sbjct 482 ACAGCGC---CTGCAGACCGCCCAGGTAGTCGGGCACGCCGTAGA 441
>seq3088503
Length=21467
Score = 116 bits (128), Expect = 8e-22
Identities = 278/416 (67%), Gaps = 6/416 (1%)
Strand=Plus/Minus
Query 13892 AGCGATCCCCGGTCCAGAACCGGTACGCCTCGTGCACCTTGCTCGACGGGGTCGAGAAGT 13951
|||| || ||||||||||| ||| ||||| || || |||| ||||| ||||||||||
Sbjct 10671 AGCGCTCGCCGGTCCAGAAGGTGTAGGCCTCATGGGCCATGCTGGACGGCGTCGAGAAGT 10612
Query 13952 AGGTCTTGCGCCAGTGGCTCTGGGTCGCCATGGCACTGGCCACATCAGACAGCTTCTCGA 14011
|||| |||||||| | | || | |||||| | || || | ||| | ||| |
Sbjct 10611 AGGTTTTGCGCCACTTCTTGTGCATGGCCATGCCCGAAGCGACCTTGTTCAGTTCCTCAA 10552
Query 14012 AGTTGGGGATCCAGAAGTATTCGTCGATGTAGACGTTGCCGGAGCGGGACTGGGCACTGT 14071
| ||| |||||||| ||||||||| ||||| |||||| | | |||||| |
Sbjct 10551 ACTTGAACGTCCAGAAGAATTCGTCGAAGTAGAAATTGCCGTGGTAGCCCTGGGCGGTAC 10492
Query 14072 TGGAGTTGGTGGAGCAGAAGTGCAGCTCGGCCCCGTTCGACAGCACGATGGGGTTGCCGG 14131
| ||||| | ||| ||||||||| ||||| | || |||||||| | || |
Sbjct 10491 GCGCATTGGTACCGAGGAAAAACAGCTCGGCGCCGTTGGGCAATACGATGGGATCCCCCG 10432
Query 14132 TCAGGGTGACGCCGAGGAAGGTC-TGGGCGATCTTGC--AGATATAGGAGCGGAACACCT 14188
|||| ||| |||| || || |||| | ||| ||| || ||| |||| |
Sbjct 10431 TCAGCTCGACACCGA-TAACCTCACGGGCAA--ATGCCTGGATGTACCCGCGAAACAGAT 10375
Query 14189 CCGCCTGGGCGCGGGTGGCGGACAGGAAAATCTGGTTGCCACCCGTCAGAATGGCATCCT 14248
|| ||| | ||||||||||| ||||| |||| || || | |||||
Sbjct 10374 AGGCTTGGTTTTTCGATGCGGACAGGAAGATCTGATTGCGCCCGGTTTCCAGCGCATCAA 10315
Query 14249 CCAACGCCTCGCCGGCGAAATAGTAAGTCATCCCGATCTGACGGGACTTGAGAATG 14304
|||||||||| ||| || || || ||| |||||||| ||| ||||| |||
Sbjct 10314 GAAACGCCTCGCGGGCAAAGTAATAGGTCGCGCCGATCTGCCGGCTTTTGAGGATG 10259
>seq3082680
Length=2560
Score = 116 bits (128), Expect = 8e-22
Identities = 169/236 (72%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 24523 TTGTCCGCTCCTCCTACGACATCCAGTCCGCCATCGCCGGGCTGGAGGGCAACGAGCTGC 24582
||||| ||| | || |||| || ||||||| ||| ||| |||| |||||
Sbjct 2305 TTGTCGCCTCGGCGTATCACATTGAGGGCGCCATCAAAGGGTTGGTTGGCAGTCAGCTGG 2364
Query 24583 CCGCCTTCACCCGCGCCTCGACCGTCCTGGCCAAGGCCACCAAGGCCGACACCGCCACCA 24642
|| |||||||| ||| | ||| ||||||||||||||||| ||||| ||| |||||
Sbjct 2365 CCACCTTCACCAATGCCAGCAACGTGTTGGCCAAGGCCACCAAGTCCGACGCCGACACCA 2424
Query 24643 TCACCAACTACATGGGCACCATGTACGGCATCTTCGAGCAGCAGGCCAAGAGAATGGGC- 24701
| || |||| | |||||||||||| | | ||| | |||||| | ||||||
Sbjct 2425 TGGGCACCTACGTCGGCACCATGTACAACTTGTTCAAAGGCCAGGCCGACGCCATGGGCA 2484
Query 24702 AAGGCCAACTGGGTGGAAGATGTGGCGGGCAAGACGGCGCTGGCGGTACAGCTGTT 24757
|||||||| ||||| ||| |||||||| ||||||| ||| || ||||||||
Sbjct 2485 AAGGCCAA-TGGGTTGAAACCCTGGCGGGCCAGACGGCCACGGCCGTGCAGCTGTT 2539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 104646264049154
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