Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_009542.2 Length=33985 Score E Sequences producing significant alignments: (Bits) Value seq3063309 203 7e-48 seq3083967 122 2e-23 seq3088503 116 8e-22 seq3082680 116 8e-22 >seq3063309 Length=1409 Score = 203 bits (224), Expect = 7e-48 Identities = 812/1257 (65%), Gaps = 31/1257 (2%) Strand=Plus/Minus Query 13068 GTGGGTATCGAGGGGCTCATTGGCCACGGCGTGGGCGATGGCAAAAAACACGTCGGCGTG 13127 || ||| | |||||| |||||| || |||||| ||| | | | ||||||||| Sbjct 1241 GTTGGTGTTGAGGGGTTCATTGAACAGGGCGTGCATGATCGACCAGGCGATGTCGGCGTG 1182 Query 13128 ACCGGTCACGTTGTCACGCGCAGCCCGGAACGTCATCTGGCCGCCGCCGGTGGTGCTGCG 13187 ||||| ||| |||| ||| | | | || | |||||||| | |||||||| ||| Sbjct 1181 GCCGGTGGCGTCAGTGCGCGAAGCGCTGTAGGTGACCTGGCCGCTGGTGGTGGTGCCGCG 1122 Query 13188 CTTGATGGCGAGGAAGGCGAGAGGGATGTCC--CGATCCGAGCTGTCCCACTCGATGCGG 13245 |||||||| ||||| || | | |||||| | | ||| || |||||| ||||||||| Sbjct 1121 CTTGATGGTCAGGAACGCCTGTGCGATGTCGGTCCAACCG-GC-GTCCCATTCGATGCGG 1064 Query 13246 TTTGCCTCCACCACATCGATCATCTTGAGGACCAGCCGTGACTT-GCTCTCGATGCTGTA 13304 | ||| | | || ||||| ||||| ||| || | |||||| |||||| Sbjct 1063 CTCCCCTGGATCGTGTCCTGGGCTTTGAGTACCAGT-GTGTTTTTGGTCTCGAGGCTGTA 1005 Query 13305 GTTGATGGGGTGGCACACCCCTTT-GAACACCGGCTTCAAGAGGTCATATACCCCGGCGC 13363 | ||| | || | ||| | | ||| | || || ||||| | || ||| || Sbjct 1004 ATGGATCGC-TGTCGCACGCGGGTAGAAGTCGCGCACCA---GGTCAAACACACCGTAGC 949 Query 13364 CGATGCCGGAGACATCGACACCCAGATAGGTG-ACCCGGAACTTCTTGGCGATGCGCTCT 13422 |||| |||| ||||| || | | | || || ||| || || | || Sbjct 948 CGATACCGGTTGTATCGATGCCGATGT-GCTGCACGTTGAAACGCTCGGTAAGTTTCTTG 890 Query 13423 ATCTCCTGCGCCTGATACTGGAAGTTCAACCCGCGCCAGTAGTGCTTTTCCAGCACTCGG 13482 | || | ||||| |||| ||| | ||| ||||| ||| |||||||| | ||| Sbjct 889 ACCTGGTCGGCCTGGTACTTGAACGACTGCCCACGCCAACTGTGTTTTTCCAGGATGCGG 830 Query 13483 AAGCGCTCGCCGGCAACCGTGGGCGGGGCGACCACCACCAGGGTGGCATTGTCGCGGGTG 13542 || | | |||| || ||||| ||||||||||| ||||| | |||||||||| Sbjct 829 AATTTCGCTCCGGGTTCCAGTGGCGGAGCGACCACCACGCACGTGGCGTCGTCGCGGGTG 770 Query 13543 CGGCTCGGGTCATAACCCATCCACACCTCGCGCCGCCCGAACGGGTCAGGACGCCCGGGC 13602 |||||||| || || || | ||||||| || ||||| || | | | || Sbjct 769 CGGCTCGGATCGTAGCCAAGCCACACCGGGCTGTTGCCGAAAGGTCGATCCAGTTCAGGG 710 Query 13603 TTGTAGTCCTCCCATCGGGTGGGGTCCACCCCTGCCCGCTCCATGTCCTGGAACTTGAAC 13662 |||||||||||||| | |||| |||||||| ||| | || ||| Sbjct 709 TTGTAGTCCTCCCACAACGACAGGTCGGAGTAACACCGCTCCAGGTCTTTGAGGCCGAAG 650 Query 13663 ACAGACAGGGCATCGTCGATAAAGCGGCACATGTAGAGGCGGTCGAACACCTCCTCCGGG 13722 | | || |||||| || ||| | | || | | ||| || || | Sbjct 649 GCGCTCTGGCTGCTGTCGATGAACTTGCAGTAGAACAGCTGCTGGAATTTGTCTTCGTCG 590 Query 13723 TACTCGTCCTTGAGCTCCTCGATGTCGATGAGGTGGCAACCGAGGCGAATGGCGTCCTCG 13782 ||||| || || | ||||| ||||| || | ||| ||| | |||||||| || Sbjct 589 TACTCCAGCTGCAGTTGCTCGAGGTCGAACAGATCGCAGCCGCCGGCTATGGCGTCGTCC 530 Query 13783 ATGGTGATGACGTAGCGCCACTGCCTGTCAGGGCAGA-TGCGGCCGCCGTCGCGTAGGTC 13841 | ||||||| | |||||| || | ||| ||||| | |||| || || ||| | | Sbjct 529 AGGGTGATGGTTTTGCGCCATTGGCCGTCGGGGCACAATGCGCCCTGGGT---GTATGAC 473 Query 13842 ATCTTCA----CCAGGGAAGTCGATGGCCACCCGGCTCGGCCGCTGTCCCTTCCAGCGAT 13897 || ||||| | || |||| | || || |||| | || | | | Sbjct 472 GCCTCGGTGGGCCAGGT--GCCGCCGGCCTTCTTGC-CG--CGCTTGCTGTTGCGGAATT 418 Query 13898 CCCCG---GTCCAGAACCGGTACGCCTCGTGC-ACCTTGCTCGACGGGGTCGAGAAGTAG 13953 || || | ||||||| ||||||| | |||| | ||| | || ||||| |||||| Sbjct 417 CCTCGCCCGACCAGAACGGGTACGCTTGGTGCGAGACTGCGCTG-GGCGTCGAAAAGTAG 359 Query 13954 GTCTTGCGCCAGTGGCTCTGGGTCGCCATGGCACTGGCCACATCAGACAGCTTCTCGAAG 14013 || |||||||| | | ||||| |||||||||||||||| || || |||||| Sbjct 358 GTTTTGCGCCACTTCTTGTGGGTGCCCATGGCACTGGCCACGGTGCTGAGTTTGTCGAAG 299 Query 14014 TTGGGGATCCAGAAGTATTCGTCGATGTAGACGTTGCCGGAGCGGGACTGGGCACTGTTG 14073 | | ||||| || || || |||| |||||||| ||| | | |||||| || || Sbjct 298 TCACGTATCCAAAAATACTCATCGACGTAGACGTGGCCATGGTAGCCCTGGGCGGTGCTG 239 Query 14074 GAGTTGGTGGAGCAGAAGTGCAGCTCGGCCCCGTTCGACAGCACGATGGGGTTGCCGGTC 14133 ||||| || |||| |||||||||| ||||| ||| ||| |||||||||||| Sbjct 238 CTATTGGTCGACAAGAAACGCAGCTCGGCGCCGTTGCTGAGCGTGATCGGGTTGCCGGTC 179 Query 14134 AGGGTGACGCCGAGGAAGGTCTGGGCGATCTTGCAGATATAGGAGCGGAACACCTCCGCC 14193 || || | ||| | || || | || | ||| || |||||| | |||| | Sbjct 178 AGCTCGATGTCGAACCACTGCTTTGCAAACTGGATGATGTAACTGCGGAAAATTTCCGAC 119 Query 14194 TGGGCGCGGGTGGCGGACAGGAAAATCTGGTTGCCACCCGTCAGAATGGCATCCTCCAAC 14253 || | |||| |||| |||||||| | ||||||| | || ||||| | ||| ||| ||| Sbjct 118 TGCGAGCGGCTGGCCGACAGGAACACCTGGTTGTCGCCGGTCAGCACGGCGTCCATGAAC 59 Query 14254 GCCTCGCCGGCGAAATAGTAAGTCATCCCGATCTGACGGGACTTGAGAATGTTACGG 14310 || ||||||||||| ||||| |||| || | ||| ||| || || ||||| ||| Sbjct 58 GCTTCGCCGGCGAAGTAGTACGTCAGGCCCACCTGGCGGCTTTTCAGGATGTTGCGG 2 >seq3083967 Length=2829 Score = 122 bits (134), Expect = 2e-23 Identities = 201/285 (71%), Gaps = 10/285 (4%) Strand=Plus/Minus Query 11484 TCGTCCTTGGTTGCGATGTCCCCCACCGGGATGAGCTTGATGCCATCGGGCTTGCCATCG 11543 |||||||||| || ||||||||| || |||| || || | | |||||| | Sbjct 720 TCGTCCTTGGCCTGGAAGTCCCCCACGGGAATGATCTGAATTGCGTTTTCCTTGCCGTTA 661 Query 11544 GGGATGTTCACGAACATCGAGCGGAAGTTCCCTAC-CCCTTTGGAGTTCGC-GATCATCT 11601 |||||||| ||||||||||| || ||||| || || ||||| || ||| |||| Sbjct 660 GGGATGTTGACGAACATCGAACGAAAGTTGCCCACGCCCTTACTAG--CGCTGATCTGGG 603 Query 11602 CCTTCATCTCCTCTTCGGTGTCGTCGTCCATGTTGGGGTCGGTCGCGTAGAAGATGAACC 11661 | || | |||||| || ||| || || || ||| | | ||| |||||| | | Sbjct 602 CGCGCAGGTTTTCTTCGTCTTCCTCGGTCAAGTCCGGATCGTTGGTGTAAAAGATGTATC 543 Query 11662 CCATGTGGGCGCCGTTGAGGAAGTAGCGGCGTCGGAACAGGGTGGCGTCCTGGTTGAG-- 11719 || ||| ||||||||| | | ||||| || ||||| ||||| ||| | | |||||| Sbjct 542 CCGCGTGTGCGCCGTTGCTGTAATAGCGCCGGCGGAAAAGGGTCGCGGCTTCGTTGAGTA 483 Query 11720 -CAGCGCAGACTGCAGGCCGCCAAGGTAATCGGGCATGCCATAGA 11763 |||||| |||||| ||||| ||||| ||||||| ||| |||| Sbjct 482 ACAGCGC---CTGCAGACCGCCCAGGTAGTCGGGCACGCCGTAGA 441 >seq3088503 Length=21467 Score = 116 bits (128), Expect = 8e-22 Identities = 278/416 (67%), Gaps = 6/416 (1%) Strand=Plus/Minus Query 13892 AGCGATCCCCGGTCCAGAACCGGTACGCCTCGTGCACCTTGCTCGACGGGGTCGAGAAGT 13951 |||| || ||||||||||| ||| ||||| || || |||| ||||| |||||||||| Sbjct 10671 AGCGCTCGCCGGTCCAGAAGGTGTAGGCCTCATGGGCCATGCTGGACGGCGTCGAGAAGT 10612 Query 13952 AGGTCTTGCGCCAGTGGCTCTGGGTCGCCATGGCACTGGCCACATCAGACAGCTTCTCGA 14011 |||| |||||||| | | || | |||||| | || || | ||| | ||| | Sbjct 10611 AGGTTTTGCGCCACTTCTTGTGCATGGCCATGCCCGAAGCGACCTTGTTCAGTTCCTCAA 10552 Query 14012 AGTTGGGGATCCAGAAGTATTCGTCGATGTAGACGTTGCCGGAGCGGGACTGGGCACTGT 14071 | ||| |||||||| ||||||||| ||||| |||||| | | |||||| | Sbjct 10551 ACTTGAACGTCCAGAAGAATTCGTCGAAGTAGAAATTGCCGTGGTAGCCCTGGGCGGTAC 10492 Query 14072 TGGAGTTGGTGGAGCAGAAGTGCAGCTCGGCCCCGTTCGACAGCACGATGGGGTTGCCGG 14131 | ||||| | ||| ||||||||| ||||| | || |||||||| | || | Sbjct 10491 GCGCATTGGTACCGAGGAAAAACAGCTCGGCGCCGTTGGGCAATACGATGGGATCCCCCG 10432 Query 14132 TCAGGGTGACGCCGAGGAAGGTC-TGGGCGATCTTGC--AGATATAGGAGCGGAACACCT 14188 |||| ||| |||| || || |||| | ||| ||| || ||| |||| | Sbjct 10431 TCAGCTCGACACCGA-TAACCTCACGGGCAA--ATGCCTGGATGTACCCGCGAAACAGAT 10375 Query 14189 CCGCCTGGGCGCGGGTGGCGGACAGGAAAATCTGGTTGCCACCCGTCAGAATGGCATCCT 14248 || ||| | ||||||||||| ||||| |||| || || | ||||| Sbjct 10374 AGGCTTGGTTTTTCGATGCGGACAGGAAGATCTGATTGCGCCCGGTTTCCAGCGCATCAA 10315 Query 14249 CCAACGCCTCGCCGGCGAAATAGTAAGTCATCCCGATCTGACGGGACTTGAGAATG 14304 |||||||||| ||| || || || ||| |||||||| ||| ||||| ||| Sbjct 10314 GAAACGCCTCGCGGGCAAAGTAATAGGTCGCGCCGATCTGCCGGCTTTTGAGGATG 10259 >seq3082680 Length=2560 Score = 116 bits (128), Expect = 8e-22 Identities = 169/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 24523 TTGTCCGCTCCTCCTACGACATCCAGTCCGCCATCGCCGGGCTGGAGGGCAACGAGCTGC 24582 ||||| ||| | || |||| || ||||||| ||| ||| |||| ||||| Sbjct 2305 TTGTCGCCTCGGCGTATCACATTGAGGGCGCCATCAAAGGGTTGGTTGGCAGTCAGCTGG 2364 Query 24583 CCGCCTTCACCCGCGCCTCGACCGTCCTGGCCAAGGCCACCAAGGCCGACACCGCCACCA 24642 || |||||||| ||| | ||| ||||||||||||||||| ||||| ||| ||||| Sbjct 2365 CCACCTTCACCAATGCCAGCAACGTGTTGGCCAAGGCCACCAAGTCCGACGCCGACACCA 2424 Query 24643 TCACCAACTACATGGGCACCATGTACGGCATCTTCGAGCAGCAGGCCAAGAGAATGGGC- 24701 | || |||| | |||||||||||| | | ||| | |||||| | |||||| Sbjct 2425 TGGGCACCTACGTCGGCACCATGTACAACTTGTTCAAAGGCCAGGCCGACGCCATGGGCA 2484 Query 24702 AAGGCCAACTGGGTGGAAGATGTGGCGGGCAAGACGGCGCTGGCGGTACAGCTGTT 24757 |||||||| ||||| ||| |||||||| ||||||| ||| || |||||||| Sbjct 2485 AAGGCCAA-TGGGTTGAAACCCTGGCGGGCCAGACGGCCACGGCCGTGCAGCTGTT 2539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104646264049154